Wall clock time and date at job start Tue Mar 31 2020 22:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 6 6 N 1.46501 * 110.72340 * 259.97553 * 4 2 1 7 7 C 1.36940 * 120.00109 * 154.99771 * 6 4 2 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99748 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47033 * 90.00309 * 11 9 7 13 13 H 1.48498 * 109.47181 * 210.00334 * 11 9 7 14 14 H 1.48501 * 109.47134 * 330.00288 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34777 * 125.64703 * 61.58893 * 17 2 1 19 19 O 1.21285 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99771 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.46945 * 180.02562 * 20 18 17 22 22 C 1.36180 * 120.19241 * 264.72897 * 21 20 18 23 23 C 1.39319 * 120.86615 * 179.68073 * 22 21 20 24 24 C 1.36107 * 121.06723 * 0.62524 * 23 22 21 25 25 C 1.40557 * 119.74683 * 359.67928 * 24 23 22 26 26 N 1.33692 * 121.07578 * 179.97438 * 25 24 23 27 27 C 1.31082 * 121.31946 * 180.02562 * 26 25 24 28 28 C 1.39333 * 121.75289 * 0.02562 * 27 26 25 29 29 C 1.36580 * 119.94091 * 359.93325 * 28 27 26 30 30 C 1.40387 * 120.19620 * 85.00292 * 21 20 18 31 31 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 32 32 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 33 33 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 34 34 H 0.96997 * 119.99273 * 334.99826 * 6 4 2 35 35 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 36 36 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 37 37 H 1.08995 * 111.00914 * 206.38778 * 15 4 2 38 38 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 39 39 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 40 40 H 1.09001 * 109.47682 * 300.00397 * 20 18 17 41 41 H 1.09003 * 109.46941 * 60.00441 * 20 18 17 42 42 H 1.08003 * 119.56615 * 359.97402 * 22 21 20 43 43 H 1.07999 * 119.46362 * 180.30173 * 23 22 21 44 44 H 1.08000 * 120.12815 * 179.66991 * 24 23 22 45 45 H 1.08002 * 119.12504 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.03077 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.92288 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6003 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7075 4.5889 10 7 3.1957 1.9320 4.2644 11 14 2.8415 0.1774 6.3801 12 1 4.1710 -0.3856 6.7274 13 1 2.5601 1.3517 7.2444 14 1 1.7958 -0.8554 6.5925 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8072 -0.3655 -2.4653 19 8 1.1431 0.6172 -2.7189 20 6 2.3831 -1.1950 -3.5838 21 6 1.9908 -0.5934 -4.9086 22 6 0.8964 -1.0563 -5.5738 23 6 0.5172 -0.5059 -6.7962 24 6 1.2351 0.5000 -7.3666 25 6 2.3747 1.0005 -6.7136 26 7 3.0997 1.9875 -7.2499 27 6 4.1635 2.4576 -6.6453 28 6 4.5920 1.9548 -5.4185 29 6 3.8965 0.9463 -4.8147 30 6 2.7548 0.4436 -5.4671 31 1 -0.3633 0.4979 0.8990 32 1 -0.3633 -1.0275 -0.0183 33 1 -0.3634 0.5296 -0.8807 34 1 2.7188 1.1016 2.0480 35 1 3.4616 2.5588 4.9552 36 1 4.1655 -0.8679 0.6615 37 1 3.4857 -2.4089 1.2832 38 1 3.6716 -2.0356 -1.3896 39 1 2.1903 -2.7735 -0.7093 40 1 3.4698 -1.2127 -3.5008 41 1 1.9971 -2.2122 -3.5178 42 1 0.3120 -1.8574 -5.1458 43 1 -0.3576 -0.8871 -7.3019 44 1 0.9305 0.9119 -8.3173 45 1 4.7228 3.2559 -7.1105 46 1 5.4725 2.3632 -4.9448 47 1 4.2142 0.5450 -3.8637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986543251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:26 Heat of formation + Delta-G solvation = 15.003116 kcal Electronic energy + Delta-G solvation = -28894.714060 eV Core-core repulsion = 25041.596873 eV Total energy + Delta-G solvation = -3853.117187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.00389 -41.07820 -38.96637 -37.96826 -35.90222 -35.11036 -33.46824 -32.49836 -32.01611 -31.47937 -30.80901 -28.45777 -26.84215 -25.23560 -24.83108 -24.55666 -23.88762 -22.20676 -21.42852 -19.99637 -19.12935 -19.06403 -18.18038 -17.98777 -17.91732 -17.22697 -16.55359 -16.17497 -15.67544 -15.50550 -15.46385 -15.23589 -15.13518 -14.76436 -14.66277 -14.54151 -14.17086 -14.01733 -13.78607 -13.56198 -13.35035 -13.12382 -12.96156 -12.87658 -12.67323 -12.64492 -12.51787 -12.47548 -12.15762 -12.14316 -12.09705 -11.71934 -11.53298 -11.48084 -10.94268 -10.80694 -10.50276 -9.71335 -9.63808 -9.15403 -9.02196 -7.94164 -5.23987 -0.58472 -0.11843 0.97580 1.49357 1.50622 1.58863 1.64474 1.87508 2.11814 2.57597 3.11282 3.37286 3.37598 3.45538 3.59261 3.78599 3.80398 3.82571 3.87548 3.91090 4.07741 4.11277 4.20395 4.24630 4.31802 4.39020 4.43897 4.48830 4.52955 4.55003 4.61011 4.67717 4.77453 4.86262 4.94441 5.02814 5.06383 5.07413 5.14438 5.22260 5.26985 5.36176 5.41324 5.48006 5.49466 5.55386 5.60591 5.92994 6.26306 6.61037 6.91850 7.18804 7.32657 8.05250 8.28433 9.29385 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.002448 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.125196 B =11436.547246 C =12082.932184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.039 0.961 4 C 0.170 3.830 5 H 0.072 0.928 6 N -0.730 5.730 7 C -0.235 4.235 8 H 0.084 0.916 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.972 3.028 12 H -0.286 1.286 13 H -0.302 1.302 14 H -0.267 1.267 15 C -0.149 4.149 16 C 0.104 3.896 17 N -0.609 5.609 18 C 0.525 3.475 19 O -0.579 6.579 20 C -0.092 4.092 21 C -0.055 4.055 22 C -0.110 4.110 23 C -0.093 4.093 24 C -0.115 4.115 25 C 0.097 3.903 26 N -0.504 5.504 27 C 0.122 3.878 28 C -0.178 4.178 29 C -0.070 4.070 30 C -0.106 4.106 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.370 0.630 35 H 0.250 0.750 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.142 0.858 42 H 0.152 0.848 43 H 0.161 0.839 44 H 0.142 0.858 45 H 0.188 0.812 46 H 0.164 0.836 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 -11.295 -22.901 25.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.057 0.943 4 C 0.060 3.940 5 H 0.090 0.910 6 N -0.369 5.369 7 C -0.367 4.367 8 H 0.102 0.898 9 C -0.269 4.269 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.213 1.213 13 H -0.229 1.229 14 H -0.191 1.191 15 C -0.190 4.190 16 C -0.018 4.018 17 N -0.342 5.342 18 C 0.315 3.685 19 O -0.459 6.459 20 C -0.131 4.131 21 C -0.056 4.056 22 C -0.128 4.128 23 C -0.112 4.112 24 C -0.134 4.134 25 C -0.023 4.023 26 N -0.212 5.212 27 C -0.050 4.050 28 C -0.197 4.197 29 C -0.096 4.096 30 C -0.108 4.108 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.202 0.798 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.160 0.840 42 H 0.169 0.831 43 H 0.178 0.822 44 H 0.160 0.840 45 H 0.205 0.795 46 H 0.181 0.819 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.341 -10.597 -23.771 26.028 hybrid contribution 0.482 0.693 2.058 2.224 sum 0.140 -9.905 -21.712 23.865 Atomic orbital electron populations 1.21919 0.94568 1.02370 1.01285 1.21605 0.94640 0.95294 0.85672 0.94284 1.21447 0.95148 0.90985 0.86389 0.91020 1.42535 1.79664 1.12159 1.02499 1.19626 1.36046 0.97011 0.83995 0.89833 1.25571 1.03044 0.96073 1.02166 1.69832 1.53410 1.05868 1.33134 0.85154 0.77925 0.76661 0.80095 1.21349 1.22858 1.19120 1.23389 0.98813 1.01217 0.95578 1.22585 0.96026 0.87968 0.95241 1.48633 1.52316 1.29086 1.04214 1.20746 0.80141 0.85082 0.82560 1.90717 1.41856 1.29608 1.83690 1.20746 1.04055 1.00707 0.87603 1.19320 0.95907 0.95215 0.95158 1.21164 0.95548 1.00846 0.95261 1.21223 0.99796 0.95052 0.95151 1.21021 0.93745 0.97661 1.00950 1.19231 0.96458 0.94073 0.92573 1.68055 1.07183 1.10904 1.35061 1.23504 0.91771 0.97535 0.92202 1.22228 1.02518 0.97866 0.97104 1.21733 0.93041 0.95645 0.99149 1.18871 0.97445 0.98395 0.96046 0.92811 0.91028 0.93224 0.79816 0.94155 0.92643 0.89230 0.87732 0.88443 0.85868 0.84029 0.83056 0.82179 0.84025 0.79547 0.81861 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.09 71.98 0.65 -4.07 16 2 C 0.13 4.55 3.21 45.34 0.15 4.69 16 3 H 0.04 1.62 7.71 -2.38 -0.02 1.61 16 4 C 0.17 6.10 3.14 46.18 0.14 6.24 16 5 H 0.07 2.52 7.80 -2.39 -0.02 2.50 16 6 N -0.73 -35.09 5.22 -317.33 -1.66 -36.74 16 7 C -0.24 -12.34 9.96 84.03 0.84 -11.51 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 10 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 11 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 15 C -0.15 -4.18 6.77 31.99 0.22 -3.96 16 16 C 0.10 1.98 6.69 86.86 0.58 2.56 16 17 N -0.61 -16.10 3.07 -788.04 -2.42 -18.52 16 18 C 0.52 14.08 7.64 87.66 0.67 14.75 16 19 O -0.58 -21.23 15.08 -3.04 -0.05 -21.28 16 20 C -0.09 -1.57 4.25 29.10 0.12 -1.45 16 21 C -0.05 -1.17 4.38 -19.82 -0.09 -1.26 16 22 C -0.11 -2.02 9.58 22.05 0.21 -1.81 16 23 C -0.09 -1.63 9.94 22.03 0.22 -1.41 16 24 C -0.12 -2.53 9.98 22.34 0.22 -2.31 16 25 C 0.10 2.57 6.60 40.28 0.27 2.84 16 26 N -0.50 -13.16 10.34 -188.64 -1.95 -15.11 16 27 C 0.12 2.52 11.15 85.07 0.95 3.46 16 28 C -0.18 -3.47 10.03 22.15 0.22 -3.24 16 29 C -0.07 -1.57 9.36 22.50 0.21 -1.36 16 30 C -0.11 -2.65 5.74 -21.28 -0.12 -2.78 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.74 6.90 -2.38 -0.02 1.73 16 34 H 0.37 19.88 7.56 -92.71 -0.70 19.18 16 35 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.10 1.34 7.48 -2.39 -0.02 1.32 16 39 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.12 1.59 6.43 -2.39 -0.02 1.58 16 41 H 0.14 1.41 8.04 -2.39 -0.02 1.39 16 42 H 0.15 1.90 8.05 -2.91 -0.02 1.88 16 43 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 44 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 45 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 47 H 0.14 2.79 6.57 -2.91 -0.02 2.77 16 Total: -1.00 -76.60 386.29 2.46 -74.14 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.29 Total: 33.65 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 5.93 Total: -4.40 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -5.74 Total: -128.91 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.05 Total: -21.28 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -76.60 2.46 -74.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986543251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.141 kcal (2) G-P(sol) polarization free energy of solvation -76.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds