Wall clock time and date at job start Tue Mar 31 2020 22:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99601 * 2 1 4 4 C 1.54327 * 109.98984 * 238.95900 * 2 1 3 5 5 H 1.09000 * 110.51966 * 336.97837 * 4 2 1 6 6 N 1.46503 * 111.00383 * 100.13051 * 4 2 1 7 7 C 1.36940 * 120.00044 * 200.23784 * 6 4 2 8 8 H 1.08005 * 119.99782 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00004 * 179.97438 * 7 6 4 10 10 N 1.31623 * 119.99760 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00126 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47069 * 90.00034 * 11 9 7 13 13 H 1.48503 * 109.47160 * 209.99632 * 11 9 7 14 14 H 1.48503 * 109.47287 * 329.99984 * 11 9 7 15 15 C 1.55156 * 103.02221 * 218.66587 * 4 2 1 16 16 C 1.54918 * 101.58012 * 35.30827 * 15 4 2 17 17 N 1.47022 * 109.88107 * 121.09522 * 2 1 3 18 18 C 1.34780 * 125.64445 * 298.39549 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.71250 * 18 17 2 20 20 C 1.50701 * 119.99795 * 179.71926 * 18 17 2 21 21 C 1.50703 * 109.47064 * 179.97438 * 20 18 17 22 22 C 1.39378 * 119.49156 * 269.72851 * 21 20 18 23 23 C 1.36169 * 121.08745 * 179.71079 * 22 21 20 24 24 C 1.40374 * 119.51424 * 0.55315 * 23 22 21 25 25 C 1.40428 * 122.08228 * 179.68309 * 24 23 22 26 26 N 1.31246 * 119.88687 * 180.02562 * 25 24 23 27 27 C 1.32610 * 122.77031 * 0.02562 * 26 25 24 28 28 C 1.36168 * 121.87936 * 0.02562 * 27 26 25 29 29 C 1.40693 * 118.66881 * 359.97438 * 28 27 26 30 30 C 1.36214 * 119.49396 * 89.99805 * 21 20 18 31 31 H 1.09000 * 109.47448 * 300.36559 * 1 2 3 32 32 H 1.09006 * 109.47364 * 60.36346 * 1 2 3 33 33 H 1.09001 * 109.47307 * 180.35888 * 1 2 3 34 34 H 0.97000 * 120.00035 * 20.23026 * 6 4 2 35 35 H 0.97004 * 119.99652 * 180.02562 * 10 9 7 36 36 H 1.08998 * 111.00676 * 277.23890 * 15 4 2 37 37 H 1.09000 * 111.00862 * 153.38046 * 15 4 2 38 38 H 1.09003 * 110.36670 * 204.15269 * 16 15 4 39 39 H 1.09001 * 110.46005 * 81.87572 * 16 15 4 40 40 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 41 41 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 42 42 H 1.08001 * 119.45251 * 359.97438 * 22 21 20 43 43 H 1.08001 * 120.23946 * 180.30156 * 23 22 21 44 44 H 1.08005 * 120.05637 * 0.02562 * 25 24 23 45 45 H 1.08000 * 119.05809 * 180.02562 * 27 26 25 46 46 H 1.08006 * 120.66487 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.25355 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 1 1.3053 -1.4407 -1.6196 6 7 2.4632 0.1937 -2.2892 7 6 2.5624 -0.2278 -3.5883 8 1 2.3420 -1.2544 -3.8413 9 6 2.9462 0.6644 -4.5801 10 7 3.2142 1.9156 -4.2717 11 14 3.0822 0.0893 -6.3521 12 1 1.7769 0.2768 -7.0350 13 1 4.1250 0.8825 -7.0512 14 1 3.4529 -1.3484 -6.3789 15 6 3.2863 -1.5184 -0.6914 16 6 2.8098 -1.8825 0.7370 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.1474 0.6239 2.7180 20 6 2.3783 -1.1932 3.5856 21 6 1.9872 -0.5889 4.9096 22 6 2.8190 0.3586 5.5038 23 6 2.4945 0.9297 6.6966 24 6 1.3087 0.5505 7.3450 25 6 0.9250 1.0997 8.5792 26 7 -0.1931 0.7133 9.1477 27 6 -0.9988 -0.1900 8.6061 28 6 -0.7164 -0.7824 7.4130 29 6 0.4660 -0.4194 6.7423 30 6 0.8290 -0.9810 5.5098 31 1 -0.3634 0.5195 0.8867 32 1 -0.3634 0.5082 -0.8933 33 1 -0.3634 -1.0276 0.0064 34 1 2.6613 1.1156 -2.0620 35 1 3.4820 2.5392 -4.9649 36 1 4.1669 -0.8769 -0.6578 37 1 3.4806 -2.4157 -1.2790 38 1 3.6655 -2.0412 1.3934 39 1 2.1805 -2.7722 0.7135 40 1 1.9877 -2.2087 3.5198 41 1 3.4650 -1.2158 3.5037 42 1 3.7339 0.6475 5.0079 43 1 3.1468 1.6661 7.1424 44 1 1.5490 1.8387 9.0598 45 1 -1.9050 -0.4636 9.1261 46 1 -1.3865 -1.5162 6.9900 47 1 0.1956 -1.7191 5.0403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986544183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:06 Heat of formation + Delta-G solvation = 31.517264 kcal Electronic energy + Delta-G solvation = -28249.272253 eV Core-core repulsion = 24396.871173 eV Total energy + Delta-G solvation = -3852.401080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.10349 -40.04602 -38.12386 -37.09589 -34.17568 -33.36395 -32.88579 -31.62369 -30.94342 -30.03658 -29.36646 -27.86825 -25.26104 -24.25504 -23.55821 -23.03460 -22.57227 -22.06478 -20.18281 -18.91030 -18.03297 -17.38048 -17.24685 -16.90556 -16.78248 -16.02212 -15.25215 -15.13728 -14.84794 -14.49827 -14.39937 -14.22559 -13.83813 -13.72721 -13.64958 -13.42395 -13.00535 -12.90576 -12.75960 -12.40315 -12.17371 -12.11873 -11.94656 -11.80132 -11.64977 -11.29493 -11.20687 -11.07808 -10.87179 -10.64234 -10.44849 -10.29540 -10.06571 -9.82777 -9.75470 -9.67199 -9.11430 -8.98830 -8.45842 -8.29970 -7.07706 -5.85625 -3.16349 0.12642 0.65089 1.69733 2.71345 2.72125 3.18147 3.38017 3.43294 3.45096 3.85035 4.13994 4.24760 4.32767 4.50813 4.56129 4.60861 4.61960 4.74471 4.89893 4.95674 5.03860 5.11827 5.20668 5.24404 5.30943 5.35504 5.42808 5.45687 5.52250 5.55830 5.62942 5.73397 5.80466 5.82106 5.88803 6.04015 6.08320 6.10451 6.24358 6.26253 6.38608 6.40442 6.53254 6.56265 6.58653 6.68294 6.87417 7.61436 7.70316 7.71764 8.28005 8.31953 9.43104 9.97404 10.31962 11.36471 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.001979 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.752714 B =14147.065508 C =14164.126930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.077 0.923 4 C 0.176 3.824 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.527 3.473 19 O -0.535 6.535 20 C -0.105 4.105 21 C -0.035 4.035 22 C -0.100 4.100 23 C -0.088 4.088 24 C -0.113 4.113 25 C 0.145 3.855 26 N -0.493 5.493 27 C 0.071 3.929 28 C -0.153 4.153 29 C -0.020 4.020 30 C -0.101 4.101 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.137 0.863 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -8.863 23.565 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.095 0.905 4 C 0.064 3.936 5 H 0.082 0.918 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.197 4.197 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.315 3.685 19 O -0.412 6.412 20 C -0.144 4.144 21 C -0.037 4.037 22 C -0.118 4.118 23 C -0.107 4.107 24 C -0.115 4.115 25 C -0.026 4.026 26 N -0.201 5.201 27 C -0.072 4.072 28 C -0.173 4.173 29 C -0.026 4.026 30 C -0.119 4.119 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.145 0.855 43 H 0.152 0.848 44 H 0.179 0.821 45 H 0.168 0.832 46 H 0.154 0.846 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.728 -8.101 24.388 25.842 hybrid contribution 0.476 -0.419 -1.911 2.013 sum -2.252 -8.520 22.477 24.143 Atomic orbital electron populations 1.22038 0.94908 1.01532 1.02718 1.21886 0.94364 0.96924 0.84411 0.90515 1.21232 0.93503 0.91637 0.87190 0.91831 1.42340 1.80731 1.09350 1.03109 1.19189 1.39231 0.95253 0.83811 0.90990 1.24777 1.02046 0.95671 0.98203 1.69669 1.52297 1.03176 1.32550 0.86175 0.77372 0.77618 0.84884 1.21634 1.21744 1.20695 1.23565 1.01423 1.01755 0.92936 1.22411 0.94637 0.88217 0.97365 1.48596 1.52324 1.28515 1.04940 1.19979 0.80862 0.85501 0.82159 1.90724 1.39955 1.27334 1.83143 1.20767 1.03182 1.00036 0.90443 1.19171 0.94510 0.95715 0.94295 1.20812 0.99862 0.95849 0.95310 1.20923 0.95371 0.99172 0.95272 1.19032 0.96663 0.98693 0.97109 1.23193 0.92591 0.96162 0.90661 1.67414 1.04595 1.12902 1.35216 1.22139 0.98501 0.93118 0.93447 1.21909 0.96998 1.01676 0.96670 1.18117 0.94351 0.95371 0.94712 1.20758 0.96329 1.00651 0.94130 0.92030 0.91168 0.93142 0.77996 0.93346 0.90599 0.90538 0.91301 0.91657 0.87844 0.87712 0.85486 0.84793 0.82071 0.83154 0.84552 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.11 37.16 0.34 -2.18 16 2 C 0.13 2.18 3.21 -66.95 -0.22 1.97 16 3 H 0.08 1.50 7.70 -51.93 -0.40 1.10 16 4 C 0.18 3.24 3.11 -66.09 -0.21 3.04 16 5 H 0.06 1.18 7.82 -51.93 -0.41 0.77 16 6 N -0.71 -16.96 5.25 -51.65 -0.27 -17.23 16 7 C -0.24 -6.42 9.98 -15.06 -0.15 -6.57 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 11 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 15 C -0.16 -2.38 6.77 -24.58 -0.17 -2.55 16 16 C 0.10 1.13 6.69 -2.53 -0.02 1.12 16 17 N -0.61 -8.69 3.06 -163.01 -0.50 -9.19 16 18 C 0.53 7.44 7.63 -10.98 -0.08 7.35 16 19 O -0.53 -9.62 15.08 5.56 0.08 -9.54 16 20 C -0.10 -1.00 4.81 -29.03 -0.14 -1.14 16 21 C -0.04 -0.37 4.34 -104.92 -0.46 -0.83 16 22 C -0.10 -1.00 9.58 -39.90 -0.38 -1.39 16 23 C -0.09 -0.81 9.81 -39.52 -0.39 -1.20 16 24 C -0.11 -1.19 5.74 -106.86 -0.61 -1.80 16 25 C 0.15 1.41 11.05 -16.98 -0.19 1.22 16 26 N -0.49 -5.42 10.30 -13.15 -0.14 -5.56 16 27 C 0.07 0.68 11.07 -17.96 -0.20 0.48 16 28 C -0.15 -1.44 9.88 -39.40 -0.39 -1.83 16 29 C -0.02 -0.22 5.75 -106.82 -0.61 -0.84 16 30 C -0.10 -1.06 9.42 -39.56 -0.37 -1.44 16 31 H 0.06 1.05 6.89 -51.93 -0.36 0.70 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.39 9.94 7.53 -40.82 -0.31 9.63 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.63 7.48 -51.93 -0.39 0.25 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.76 8.07 -51.93 -0.42 0.34 16 41 H 0.10 0.80 7.78 -51.93 -0.40 0.40 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 47 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -33.24 389.53 -10.47 -43.71 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.88 Total: 8.87 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -4.34 Total: -6.96 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.18 Total: -58.57 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.24 -10.47 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986544183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.227 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds