Wall clock time and date at job start Tue Mar 31 2020 22:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.99260 * 2 1 4 4 C 1.54317 * 109.88357 * 121.09143 * 2 1 3 5 5 H 1.08994 * 110.87785 * 260.04821 * 4 2 1 6 6 N 1.46502 * 110.71871 * 23.25269 * 4 2 1 7 7 C 1.36934 * 119.99850 * 264.40680 * 6 4 2 8 8 H 1.08003 * 120.00353 * 359.72080 * 7 6 4 9 9 C 1.38815 * 119.99833 * 179.72822 * 7 6 4 10 10 N 1.31614 * 120.00320 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99695 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47278 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47011 * 119.99914 * 11 9 7 14 14 H 1.48508 * 109.46756 * 239.99439 * 11 9 7 15 15 C 1.55155 * 102.93927 * 141.61311 * 4 2 1 16 16 C 1.54906 * 101.58628 * 324.50092 * 15 4 2 17 17 N 1.47018 * 109.88401 * 238.90917 * 2 1 3 18 18 C 1.34778 * 125.65515 * 61.67006 * 17 2 1 19 19 O 1.21281 * 119.99532 * 359.97438 * 18 17 2 20 20 C 1.50695 * 120.00179 * 179.97438 * 18 17 2 21 21 C 1.50699 * 109.47193 * 179.97438 * 20 18 17 22 22 C 1.36107 * 120.12927 * 265.00492 * 21 20 18 23 23 C 1.39317 * 121.06403 * 180.02562 * 22 21 20 24 24 C 1.36167 * 120.87424 * 359.97438 * 23 22 21 25 25 C 1.40400 * 119.61179 * 0.02562 * 24 23 22 26 26 C 1.40776 * 121.38246 * 180.02562 * 25 24 23 27 27 C 1.36579 * 118.14535 * 179.97438 * 26 25 24 28 28 C 1.39332 * 119.94245 * 0.02562 * 27 26 25 29 29 N 1.31087 * 121.75378 * 359.97438 * 28 27 26 30 30 C 1.33686 * 121.31778 * 359.71068 * 29 28 27 31 31 H 1.08994 * 109.47076 * 293.64000 * 1 2 3 32 32 H 1.08997 * 109.47172 * 53.64315 * 1 2 3 33 33 H 1.09005 * 109.46600 * 173.63815 * 1 2 3 34 34 H 0.97000 * 119.99720 * 84.13476 * 6 4 2 35 35 H 0.96999 * 120.00713 * 180.02562 * 10 9 7 36 36 H 1.09000 * 111.00726 * 82.57636 * 15 4 2 37 37 H 1.09007 * 111.00347 * 206.38861 * 15 4 2 38 38 H 1.08993 * 110.36992 * 155.84684 * 16 15 4 39 39 H 1.09003 * 110.36819 * 278.17215 * 16 15 4 40 40 H 1.08994 * 109.47345 * 300.00480 * 20 18 17 41 41 H 1.09002 * 109.46810 * 60.00413 * 20 18 17 42 42 H 1.08000 * 119.46804 * 0.02562 * 22 21 20 43 43 H 1.08002 * 119.55755 * 179.97438 * 23 22 21 44 44 H 1.07994 * 120.19648 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.92793 * 359.97438 * 26 25 24 46 46 H 1.07999 * 120.02789 * 180.02562 * 27 26 25 47 47 H 1.08001 * 119.12675 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0549 -0.7494 1.2427 5 1 2.3525 -0.0482 2.0222 6 7 1.0472 -1.6855 1.7474 7 6 0.2103 -1.3082 2.7634 8 1 0.2959 -0.3222 3.1958 9 6 -0.7482 -2.1932 3.2378 10 7 -0.8529 -3.3946 2.7108 11 14 -1.8895 -1.6788 4.6243 12 1 -1.5691 -0.2895 5.0396 13 1 -3.2974 -1.7438 4.1565 14 1 -1.7090 -2.5944 5.7795 15 6 3.2877 -1.5140 0.6924 16 6 2.8147 -1.8793 -0.7368 17 7 2.0301 -0.7139 -1.1839 18 6 1.8086 -0.3612 -2.4657 19 8 1.1450 0.6221 -2.7180 20 6 2.3853 -1.1887 -3.5854 21 6 1.9935 -0.5851 -4.9094 22 6 0.8966 -1.0442 -5.5717 23 6 0.5170 -0.5008 -6.7971 24 6 1.2339 0.5070 -7.3667 25 6 2.3713 1.0055 -6.7117 26 6 3.1393 2.0467 -7.2664 27 6 4.2325 2.4811 -6.5723 28 6 4.5594 1.8946 -5.3515 29 7 3.8419 0.9252 -4.8378 30 6 2.7565 0.4578 -5.4627 31 1 -0.3633 0.4121 0.9414 32 1 -0.3633 0.6092 -0.8276 33 1 -0.3633 -1.0214 -0.1139 34 1 0.9704 -2.5711 1.3592 35 1 -1.5229 -4.0129 3.0420 36 1 4.1655 -0.8687 0.6604 37 1 3.4857 -2.4105 1.2800 38 1 3.6717 -2.0336 -1.3922 39 1 2.1888 -2.7714 -0.7129 40 1 3.4719 -1.2069 -3.5013 41 1 1.9989 -2.2059 -3.5217 42 1 0.3112 -1.8427 -5.1404 43 1 -0.3576 -0.8840 -7.3018 44 1 0.9299 0.9199 -8.3172 45 1 2.8716 2.4897 -8.2142 46 1 4.8430 3.2786 -6.9695 47 1 5.4269 2.2481 -4.8140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986628230.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:45 Heat of formation + Delta-G solvation = 38.573594 kcal Electronic energy + Delta-G solvation = -29221.483380 eV Core-core repulsion = 25369.388285 eV Total energy + Delta-G solvation = -3852.095095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.05233 -39.68259 -37.64968 -36.94930 -34.16149 -33.92799 -31.80151 -31.16990 -30.66867 -30.57567 -28.97143 -27.22110 -25.16413 -24.33860 -23.71456 -23.35216 -22.51923 -21.22378 -19.66686 -18.40739 -18.32803 -17.44687 -17.07745 -16.90516 -16.54024 -15.73418 -15.08356 -14.75664 -14.58559 -14.36776 -14.22754 -14.06389 -13.67374 -13.48311 -13.46203 -13.21885 -13.01874 -12.81445 -12.48371 -12.37908 -11.92190 -11.83308 -11.72931 -11.43097 -11.30574 -11.23990 -10.87938 -10.81689 -10.60598 -10.55358 -10.43153 -10.12471 -10.00410 -9.65308 -9.58617 -9.33475 -8.94621 -8.87897 -8.26825 -8.10237 -7.01589 -5.80800 -3.09474 0.25830 0.71668 1.85370 2.80458 3.10405 3.41602 3.47512 3.48601 3.49841 4.00982 4.19584 4.36000 4.55878 4.56266 4.65197 4.73527 4.90645 4.94799 5.01392 5.07132 5.19932 5.22270 5.31173 5.39742 5.47301 5.53492 5.62975 5.68284 5.76889 5.81856 5.83229 5.89618 5.92932 5.99146 6.16451 6.25843 6.30326 6.33172 6.37186 6.39221 6.52100 6.65735 6.71993 6.74352 6.90436 7.13663 7.38987 7.68057 7.82138 8.06004 8.36820 8.65688 9.49097 10.03561 10.39011 11.41472 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.002616 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.114535 B =10700.978406 C =11207.948941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.111 3.889 3 H 0.057 0.943 4 C 0.170 3.830 5 H 0.073 0.927 6 N -0.709 5.709 7 C -0.237 4.237 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.904 3.096 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.145 4.145 16 C 0.102 3.898 17 N -0.606 5.606 18 C 0.536 3.464 19 O -0.542 6.542 20 C -0.094 4.094 21 C -0.031 4.031 22 C -0.095 4.095 23 C -0.108 4.108 24 C -0.105 4.105 25 C -0.102 4.102 26 C -0.060 4.060 27 C -0.179 4.179 28 C 0.127 3.873 29 N -0.465 5.465 30 C 0.143 3.857 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.356 6.044 -21.058 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.005 3.995 3 H 0.075 0.925 4 C 0.058 3.942 5 H 0.091 0.909 6 N -0.348 5.348 7 C -0.368 4.368 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.735 3.265 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.184 4.184 16 C -0.021 4.021 17 N -0.340 5.340 18 C 0.324 3.676 19 O -0.419 6.419 20 C -0.134 4.134 21 C -0.032 4.032 22 C -0.114 4.114 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.104 4.104 26 C -0.086 4.086 27 C -0.199 4.199 28 C -0.046 4.046 29 N -0.172 5.172 30 C 0.021 3.979 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.154 0.846 46 H 0.153 0.847 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.029 6.203 -20.269 23.895 hybrid contribution -0.981 0.348 -0.217 1.064 sum 10.047 6.551 -20.486 23.739 Atomic orbital electron populations 1.21749 0.93889 1.02428 1.00831 1.22667 0.96027 0.95299 0.85529 0.92538 1.21247 0.88500 0.92167 0.92295 0.90884 1.42331 1.37572 1.14058 1.40853 1.19239 1.09817 0.98479 1.09223 0.91039 1.24713 0.99743 0.96187 1.00007 1.69656 1.37267 1.06415 1.44515 0.86163 0.80833 0.77606 0.81870 1.20523 1.21913 1.21922 1.23136 0.98559 1.01727 0.94993 1.22285 0.94572 0.89186 0.96057 1.48587 1.52051 1.28336 1.05010 1.19843 0.80424 0.85223 0.82124 1.90670 1.40226 1.27805 1.83218 1.20552 1.03508 0.99309 0.90040 1.19007 0.94648 0.94517 0.95042 1.20820 0.95398 1.00286 0.94932 1.20881 0.99672 0.96514 0.95494 1.20925 0.94446 0.97153 0.99835 1.18801 0.97448 0.98117 0.96036 1.21428 0.93693 0.94159 0.99284 1.21856 0.98864 1.02071 0.97063 1.22941 0.97599 0.91411 0.92617 1.67990 1.04967 1.11606 1.32666 1.18605 0.92859 0.95379 0.91018 0.91435 0.94396 0.91836 0.78106 0.93554 0.91092 0.89585 0.91532 0.91267 0.87419 0.88326 0.85199 0.85417 0.85417 0.84612 0.84729 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.02 37.16 0.30 -2.53 16 2 C 0.11 2.12 3.43 -66.96 -0.23 1.89 16 3 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.17 3.23 3.52 -66.10 -0.23 3.00 16 5 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 6 N -0.71 -16.50 3.91 -51.66 -0.20 -16.70 16 7 C -0.24 -6.20 8.40 -15.06 -0.13 -6.32 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 11 Si 0.90 22.00 29.55 -169.99 -5.02 16.98 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 15 C -0.14 -2.19 6.69 -24.59 -0.16 -2.35 16 16 C 0.10 1.49 6.62 -2.53 -0.02 1.47 16 17 N -0.61 -10.48 3.06 -163.02 -0.50 -10.98 16 18 C 0.54 9.50 7.64 -10.99 -0.08 9.42 16 19 O -0.54 -11.59 15.18 5.56 0.08 -11.50 16 20 C -0.09 -1.30 4.57 -29.04 -0.13 -1.43 16 21 C -0.03 -0.44 4.38 -104.51 -0.46 -0.89 16 22 C -0.09 -1.16 9.56 -39.95 -0.38 -1.54 16 23 C -0.11 -1.12 9.95 -39.92 -0.40 -1.52 16 24 C -0.10 -1.07 9.78 -39.51 -0.39 -1.46 16 25 C -0.10 -1.23 5.74 -106.80 -0.61 -1.84 16 26 C -0.06 -0.56 9.90 -39.22 -0.39 -0.95 16 27 C -0.18 -1.57 10.03 -39.77 -0.40 -1.97 16 28 C 0.13 1.37 11.15 -17.46 -0.19 1.17 16 29 N -0.46 -6.56 9.51 -10.97 -0.10 -6.66 16 30 C 0.14 2.05 6.58 -84.86 -0.56 1.49 16 31 H 0.07 1.52 7.11 -51.93 -0.37 1.15 16 32 H 0.04 0.82 7.08 -51.93 -0.37 0.46 16 33 H 0.06 1.51 7.63 -51.93 -0.40 1.11 16 34 H 0.38 9.58 7.84 -40.82 -0.32 9.26 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 0.78 7.47 -51.93 -0.39 0.39 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.11 1.38 7.42 -51.93 -0.39 1.00 16 41 H 0.10 1.14 8.04 -51.93 -0.42 0.73 16 42 H 0.13 1.39 8.04 -52.49 -0.42 0.97 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -33.77 384.76 -10.62 -44.39 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.84 Total: 9.81 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -4.56 Total: -4.75 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.08 Total: -60.72 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.77 -10.62 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986628230.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.962 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds