Wall clock time and date at job start Tue Mar 31 2020 22:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.99260 * 2 1 4 4 C 1.54317 * 109.88357 * 121.09143 * 2 1 3 5 5 H 1.08994 * 110.87785 * 260.04821 * 4 2 1 6 6 N 1.46502 * 110.71871 * 23.25269 * 4 2 1 7 7 C 1.36934 * 119.99850 * 264.40680 * 6 4 2 8 8 H 1.08003 * 120.00353 * 359.72080 * 7 6 4 9 9 C 1.38815 * 119.99833 * 179.72822 * 7 6 4 10 10 N 1.31614 * 120.00320 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99695 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47278 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47011 * 119.99914 * 11 9 7 14 14 H 1.48508 * 109.46756 * 239.99439 * 11 9 7 15 15 C 1.55155 * 102.93927 * 141.61311 * 4 2 1 16 16 C 1.54906 * 101.58628 * 324.50092 * 15 4 2 17 17 N 1.47018 * 109.88401 * 238.90917 * 2 1 3 18 18 C 1.34778 * 125.65515 * 61.67006 * 17 2 1 19 19 O 1.21281 * 119.99532 * 359.97438 * 18 17 2 20 20 C 1.50695 * 120.00179 * 179.97438 * 18 17 2 21 21 C 1.50699 * 109.47193 * 179.97438 * 20 18 17 22 22 C 1.36107 * 120.12927 * 265.00492 * 21 20 18 23 23 C 1.39317 * 121.06403 * 180.02562 * 22 21 20 24 24 C 1.36167 * 120.87424 * 359.97438 * 23 22 21 25 25 C 1.40400 * 119.61179 * 0.02562 * 24 23 22 26 26 C 1.40776 * 121.38246 * 180.02562 * 25 24 23 27 27 C 1.36579 * 118.14535 * 179.97438 * 26 25 24 28 28 C 1.39332 * 119.94245 * 0.02562 * 27 26 25 29 29 N 1.31087 * 121.75378 * 359.97438 * 28 27 26 30 30 C 1.33686 * 121.31778 * 359.71068 * 29 28 27 31 31 H 1.08994 * 109.47076 * 293.64000 * 1 2 3 32 32 H 1.08997 * 109.47172 * 53.64315 * 1 2 3 33 33 H 1.09005 * 109.46600 * 173.63815 * 1 2 3 34 34 H 0.97000 * 119.99720 * 84.13476 * 6 4 2 35 35 H 0.96999 * 120.00713 * 180.02562 * 10 9 7 36 36 H 1.09000 * 111.00726 * 82.57636 * 15 4 2 37 37 H 1.09007 * 111.00347 * 206.38861 * 15 4 2 38 38 H 1.08993 * 110.36992 * 155.84684 * 16 15 4 39 39 H 1.09003 * 110.36819 * 278.17215 * 16 15 4 40 40 H 1.08994 * 109.47345 * 300.00480 * 20 18 17 41 41 H 1.09002 * 109.46810 * 60.00413 * 20 18 17 42 42 H 1.08000 * 119.46804 * 0.02562 * 22 21 20 43 43 H 1.08002 * 119.55755 * 179.97438 * 23 22 21 44 44 H 1.07994 * 120.19648 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.92793 * 359.97438 * 26 25 24 46 46 H 1.07999 * 120.02789 * 180.02562 * 27 26 25 47 47 H 1.08001 * 119.12675 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0549 -0.7494 1.2427 5 1 2.3525 -0.0482 2.0222 6 7 1.0472 -1.6855 1.7474 7 6 0.2103 -1.3082 2.7634 8 1 0.2959 -0.3222 3.1958 9 6 -0.7482 -2.1932 3.2378 10 7 -0.8529 -3.3946 2.7108 11 14 -1.8895 -1.6788 4.6243 12 1 -1.5691 -0.2895 5.0396 13 1 -3.2974 -1.7438 4.1565 14 1 -1.7090 -2.5944 5.7795 15 6 3.2877 -1.5140 0.6924 16 6 2.8147 -1.8793 -0.7368 17 7 2.0301 -0.7139 -1.1839 18 6 1.8086 -0.3612 -2.4657 19 8 1.1450 0.6221 -2.7180 20 6 2.3853 -1.1887 -3.5854 21 6 1.9935 -0.5851 -4.9094 22 6 0.8966 -1.0442 -5.5717 23 6 0.5170 -0.5008 -6.7971 24 6 1.2339 0.5070 -7.3667 25 6 2.3713 1.0055 -6.7117 26 6 3.1393 2.0467 -7.2664 27 6 4.2325 2.4811 -6.5723 28 6 4.5594 1.8946 -5.3515 29 7 3.8419 0.9252 -4.8378 30 6 2.7565 0.4578 -5.4627 31 1 -0.3633 0.4121 0.9414 32 1 -0.3633 0.6092 -0.8276 33 1 -0.3633 -1.0214 -0.1139 34 1 0.9704 -2.5711 1.3592 35 1 -1.5229 -4.0129 3.0420 36 1 4.1655 -0.8687 0.6604 37 1 3.4857 -2.4105 1.2800 38 1 3.6717 -2.0336 -1.3922 39 1 2.1888 -2.7714 -0.7129 40 1 3.4719 -1.2069 -3.5013 41 1 1.9989 -2.2059 -3.5217 42 1 0.3112 -1.8427 -5.1404 43 1 -0.3576 -0.8840 -7.3018 44 1 0.9299 0.9199 -8.3172 45 1 2.8716 2.4897 -8.2142 46 1 4.8430 3.2786 -6.9695 47 1 5.4269 2.2481 -4.8140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986628230.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:44 Heat of formation + Delta-G solvation = 18.496963 kcal Electronic energy + Delta-G solvation = -29222.353968 eV Core-core repulsion = 25369.388285 eV Total energy + Delta-G solvation = -3852.965683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.90905 -41.04281 -38.94597 -37.93959 -35.73247 -35.04353 -33.36684 -32.39894 -31.99489 -31.44344 -30.58675 -28.33097 -26.81631 -25.30206 -25.08895 -24.50630 -23.81368 -22.24821 -21.07044 -19.75337 -19.33771 -19.17333 -18.01576 -17.88419 -17.70633 -17.15987 -16.44825 -16.11844 -15.67426 -15.45993 -15.39947 -15.22685 -15.05257 -14.91687 -14.82244 -14.42993 -14.03901 -13.90709 -13.86973 -13.69577 -13.20858 -13.04523 -12.89594 -12.79903 -12.65950 -12.55410 -12.38994 -12.29342 -12.15019 -12.13571 -11.85491 -11.69065 -11.50364 -11.42016 -10.96833 -10.74217 -10.38589 -9.68688 -9.55226 -9.11532 -8.98378 -7.91437 -5.18022 -0.52102 -0.08458 1.03810 1.47097 1.49116 1.57090 1.73766 1.98009 2.20443 2.57344 3.15334 3.39912 3.40884 3.54783 3.72146 3.75202 3.81460 3.90062 3.92228 4.08439 4.11155 4.18513 4.26777 4.29662 4.38283 4.41931 4.45291 4.54379 4.57602 4.60849 4.65820 4.76887 4.85227 4.88864 5.01336 5.08969 5.12740 5.15230 5.17007 5.24674 5.31174 5.46519 5.48066 5.49893 5.54921 5.58890 5.64936 5.97004 6.30179 6.69244 7.01886 7.27268 7.38290 8.10748 8.35505 9.31697 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.002616 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.114535 B =10700.978406 C =11207.948941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.115 3.885 3 H 0.056 0.944 4 C 0.164 3.836 5 H 0.076 0.924 6 N -0.715 5.715 7 C -0.224 4.224 8 H 0.074 0.926 9 C -0.070 4.070 10 N -0.965 5.965 11 Si 0.960 3.040 12 H -0.268 1.268 13 H -0.301 1.301 14 H -0.294 1.294 15 C -0.130 4.130 16 C 0.102 3.898 17 N -0.608 5.608 18 C 0.531 3.469 19 O -0.584 6.584 20 C -0.081 4.081 21 C -0.066 4.066 22 C -0.103 4.103 23 C -0.121 4.121 24 C -0.099 4.099 25 C -0.127 4.127 26 C -0.060 4.060 27 C -0.176 4.176 28 C 0.117 3.883 29 N -0.505 5.505 30 C 0.113 3.887 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.036 0.964 34 H 0.376 0.624 35 H 0.248 0.752 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.171 0.829 46 H 0.172 0.828 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.069 7.199 -22.931 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.009 3.991 3 H 0.074 0.926 4 C 0.053 3.947 5 H 0.094 0.906 6 N -0.353 5.353 7 C -0.356 4.356 8 H 0.092 0.908 9 C -0.263 4.263 10 N -0.616 5.616 11 Si 0.791 3.209 12 H -0.192 1.192 13 H -0.229 1.229 14 H -0.222 1.222 15 C -0.169 4.169 16 C -0.020 4.020 17 N -0.341 5.341 18 C 0.321 3.679 19 O -0.465 6.465 20 C -0.120 4.120 21 C -0.067 4.067 22 C -0.123 4.123 23 C -0.138 4.138 24 C -0.117 4.117 25 C -0.129 4.129 26 C -0.085 4.085 27 C -0.196 4.196 28 C -0.055 4.055 29 N -0.213 5.213 30 C -0.007 4.007 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.208 0.792 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.154 0.846 43 H 0.172 0.828 44 H 0.179 0.821 45 H 0.189 0.811 46 H 0.189 0.811 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.791 7.376 -22.147 26.618 hybrid contribution -1.443 0.128 0.262 1.472 sum 11.348 7.504 -21.885 25.769 Atomic orbital electron populations 1.21536 0.96007 1.00134 0.99488 1.22420 0.94124 0.95714 0.86861 0.92565 1.21436 0.89078 0.92059 0.92110 0.90572 1.42417 1.38233 1.14310 1.40364 1.19531 1.09228 0.98085 1.08766 0.90766 1.25371 1.01736 0.96560 1.02611 1.69786 1.38199 1.07411 1.46214 0.85261 0.78586 0.77691 0.79396 1.19242 1.22863 1.22159 1.23067 0.97405 1.01764 0.94665 1.22440 0.95296 0.87696 0.96541 1.48659 1.52091 1.28802 1.04536 1.20588 0.79604 0.84946 0.82741 1.90634 1.42160 1.29813 1.83879 1.20478 1.03675 0.99240 0.88646 1.19168 0.96073 0.95941 0.95520 1.21090 0.94944 1.00465 0.95770 1.21215 1.00741 0.96813 0.95075 1.21359 0.93344 0.96337 1.00667 1.19196 0.98650 0.99206 0.95828 1.21890 0.93159 0.93073 1.00426 1.22247 0.98939 1.02332 0.96067 1.23526 0.97752 0.90619 0.93610 1.67951 1.05916 1.13443 1.34009 1.18884 0.93479 0.96070 0.92313 0.92876 0.95397 0.94496 0.79180 0.94268 0.88305 0.89201 0.87827 0.92033 0.86553 0.86527 0.84614 0.82756 0.82055 0.81121 0.81052 0.80378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.06 8.02 71.98 0.58 -4.48 16 2 C 0.12 4.44 3.43 45.34 0.16 4.59 16 3 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 4 C 0.16 6.10 3.52 46.18 0.16 6.26 16 5 H 0.08 2.80 8.06 -2.39 -0.02 2.78 16 6 N -0.72 -33.49 3.91 -317.34 -1.24 -34.73 16 7 C -0.22 -11.81 8.40 84.03 0.71 -11.11 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 9 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 10 N -0.97 -57.47 13.06 21.65 0.28 -57.19 16 11 Si 0.96 45.87 29.55 68.60 2.03 47.89 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 14 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 15 C -0.13 -3.65 6.69 31.98 0.21 -3.44 16 16 C 0.10 2.81 6.62 86.85 0.58 3.38 16 17 N -0.61 -20.79 3.06 -788.07 -2.42 -23.20 16 18 C 0.53 18.97 7.64 87.66 0.67 19.64 16 19 O -0.58 -25.72 15.18 -3.03 -0.05 -25.76 16 20 C -0.08 -2.22 4.57 29.10 0.13 -2.08 16 21 C -0.07 -1.87 4.38 -19.79 -0.09 -1.96 16 22 C -0.10 -2.52 9.56 22.03 0.21 -2.31 16 23 C -0.12 -2.37 9.95 22.05 0.22 -2.15 16 24 C -0.10 -1.82 9.78 22.31 0.22 -1.60 16 25 C -0.13 -2.89 5.74 -21.27 -0.12 -3.01 16 26 C -0.06 -0.96 9.90 22.50 0.22 -0.74 16 27 C -0.18 -2.62 10.03 22.15 0.22 -2.40 16 28 C 0.12 2.36 11.15 85.07 0.95 3.31 16 29 N -0.50 -14.08 9.51 -188.63 -1.79 -15.87 16 30 C 0.11 3.23 6.58 40.29 0.27 3.49 16 31 H 0.05 2.46 7.11 -2.39 -0.02 2.44 16 32 H 0.03 1.26 7.08 -2.39 -0.02 1.24 16 33 H 0.04 1.81 7.63 -2.38 -0.02 1.79 16 34 H 0.38 18.99 7.84 -92.71 -0.73 18.26 16 35 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.10 2.13 7.47 -2.39 -0.02 2.11 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.12 2.91 7.42 -2.39 -0.02 2.89 16 41 H 0.12 2.65 8.04 -2.39 -0.02 2.63 16 42 H 0.14 2.94 8.04 -2.91 -0.02 2.91 16 43 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 46 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 47 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -76.47 384.76 2.83 -73.64 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.26 Total: 33.28 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 5.76 Total: 1.94 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -5.17 Total: -131.00 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -76.47 2.83 -73.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986628230.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.138 kcal (2) G-P(sol) polarization free energy of solvation -76.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds