Wall clock time and date at job start Tue Mar 31 2020 22:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.87605 * 2 1 4 4 C 1.54325 * 109.88304 * 238.98623 * 2 1 3 5 5 H 1.08994 * 110.87038 * 336.82305 * 4 2 1 6 6 N 1.46497 * 110.72131 * 100.02611 * 4 2 1 7 7 C 1.36935 * 120.00023 * 199.98015 * 6 4 2 8 8 H 1.07998 * 120.00224 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99817 * 180.02562 * 7 6 4 10 10 N 1.31627 * 119.99924 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00363 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46995 * 90.00180 * 11 9 7 13 13 H 1.48499 * 109.47530 * 210.00067 * 11 9 7 14 14 H 1.48494 * 109.47112 * 330.00526 * 11 9 7 15 15 C 1.55154 * 102.94303 * 218.39038 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 109.87458 * 121.13978 * 2 1 3 18 18 C 1.34774 * 125.79121 * 298.35971 * 17 2 1 19 19 O 1.21280 * 120.00501 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99753 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47230 * 179.97438 * 20 18 17 22 22 C 1.36113 * 120.12501 * 264.71969 * 21 20 18 23 23 C 1.39322 * 121.06735 * 179.67467 * 22 21 20 24 24 C 1.36174 * 120.86543 * 0.65180 * 23 22 21 25 25 C 1.40386 * 119.61425 * 359.66023 * 24 23 22 26 26 C 1.40778 * 121.37737 * 180.02562 * 25 24 23 27 27 C 1.36570 * 118.15300 * 179.97438 * 26 25 24 28 28 C 1.39337 * 119.93713 * 359.97438 * 27 26 25 29 29 N 1.31085 * 121.75289 * 0.03091 * 28 27 26 30 30 C 1.33688 * 121.32348 * 359.96914 * 29 28 27 31 31 H 1.08998 * 109.47192 * 181.01574 * 1 2 3 32 32 H 1.09005 * 109.47110 * 301.01774 * 1 2 3 33 33 H 1.09003 * 109.47228 * 61.01109 * 1 2 3 34 34 H 0.97001 * 120.00178 * 19.97534 * 6 4 2 35 35 H 0.97000 * 120.00215 * 179.97438 * 10 9 7 36 36 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 37 37 H 1.09000 * 111.03743 * 153.59413 * 15 4 2 38 38 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 39 39 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 40 40 H 1.09001 * 109.47204 * 299.99785 * 20 18 17 41 41 H 1.09000 * 109.47543 * 59.99762 * 20 18 17 42 42 H 1.08006 * 119.46431 * 0.02562 * 22 21 20 43 43 H 1.08001 * 119.56309 * 180.30375 * 23 22 21 44 44 H 1.07997 * 120.18751 * 179.63522 * 24 23 22 45 45 H 1.08001 * 120.92370 * 359.97438 * 26 25 24 46 46 H 1.07991 * 120.03343 * 179.97438 * 27 26 25 47 47 H 1.07994 * 119.12797 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3065 -1.4435 -1.6231 6 7 2.4554 0.1993 -2.2872 7 6 2.5574 -0.2175 -3.5876 8 1 2.3429 -1.2444 -3.8440 9 6 2.9375 0.6798 -4.5762 10 7 3.0360 0.2791 -5.8261 11 14 3.3093 2.4559 -4.1328 12 1 4.7507 2.5923 -3.8024 13 1 2.9805 3.3331 -5.2851 14 1 2.4924 2.8543 -2.9585 15 6 3.2876 -1.5133 -0.6946 16 6 2.8145 -1.8804 0.7341 17 7 2.0307 -0.7163 1.1856 18 6 1.8103 -0.3675 2.4686 19 8 1.1467 0.6148 2.7247 20 6 2.3884 -1.1982 3.5852 21 6 1.9987 -0.5981 4.9114 22 6 2.8462 0.2534 5.5514 23 6 2.5030 0.8247 6.7749 24 6 1.3135 0.5359 7.3716 25 6 0.4175 -0.3433 6.7431 26 6 -0.8222 -0.6672 7.3264 27 6 -1.6434 -1.5293 6.6575 28 6 -1.2443 -2.0607 5.4328 29 7 -0.0893 -1.7570 4.8925 30 6 0.7611 -0.9196 5.4950 31 1 -0.3633 -1.0275 0.0182 32 1 -0.3633 0.5296 0.8808 33 1 -0.3634 0.4981 -0.8989 34 1 2.6484 1.1216 -2.0570 35 1 3.3013 0.9062 -6.5170 36 1 4.1654 -0.8679 -0.6617 37 1 3.4858 -2.4092 -1.2829 38 1 2.1886 -2.7725 0.7089 39 1 3.6716 -2.0377 1.3888 40 1 2.0023 -2.2154 3.5188 41 1 3.4750 -1.2158 3.5000 42 1 3.7976 0.4945 5.1006 43 1 3.1919 1.5010 7.2590 44 1 1.0612 0.9804 8.3229 45 1 -1.1156 -0.2456 8.2764 46 1 -2.6011 -1.7990 7.0773 47 1 -1.9038 -2.7415 4.9153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986628231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:48 Heat of formation + Delta-G solvation = 39.229093 kcal Electronic energy + Delta-G solvation = -28932.971064 eV Core-core repulsion = 25080.904393 eV Total energy + Delta-G solvation = -3852.066670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.16106 -39.87752 -37.76438 -37.07868 -34.28556 -34.21872 -32.01726 -31.35352 -30.87236 -30.76254 -29.64628 -27.49370 -25.32062 -24.43799 -23.81496 -22.86400 -22.62611 -21.26500 -20.15626 -18.80477 -18.51001 -17.56559 -17.19092 -16.99862 -16.81774 -16.08162 -15.18428 -14.88803 -14.72646 -14.52948 -14.33919 -14.07315 -14.00474 -13.71880 -13.36839 -13.28586 -13.18507 -12.72486 -12.66849 -12.42327 -12.13121 -11.94437 -11.91176 -11.82916 -11.72947 -11.44584 -11.27588 -11.14867 -10.89030 -10.70258 -10.61071 -10.33291 -10.03719 -9.68021 -9.64956 -9.54165 -8.97931 -8.95905 -8.40058 -8.37798 -7.32998 -5.81330 -3.18246 0.15808 0.62044 1.75124 2.69680 2.86216 3.19125 3.36461 3.40583 3.44717 3.90062 4.09405 4.25190 4.47219 4.53816 4.56009 4.64986 4.71948 4.81076 4.91061 4.97467 5.07600 5.09686 5.17672 5.20872 5.27547 5.39414 5.45589 5.55100 5.56179 5.63178 5.71573 5.74160 5.79131 5.83871 5.86159 5.94052 6.04959 6.15383 6.20648 6.24975 6.28874 6.39491 6.55025 6.56907 6.63278 6.68873 6.84155 7.73002 7.77796 7.93394 8.37322 8.39867 9.14243 9.86942 10.05575 11.36467 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020772 B = 0.002513 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.615195 B =11140.763108 C =11503.177453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.072 0.928 4 C 0.181 3.819 5 H 0.073 0.927 6 N -0.740 5.740 7 C -0.246 4.246 8 H 0.092 0.908 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.882 3.118 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.154 4.154 16 C 0.098 3.902 17 N -0.612 5.612 18 C 0.538 3.462 19 O -0.538 6.538 20 C -0.093 4.093 21 C -0.033 4.033 22 C -0.095 4.095 23 C -0.109 4.109 24 C -0.103 4.103 25 C -0.102 4.102 26 C -0.059 4.059 27 C -0.177 4.177 28 C 0.129 3.871 29 N -0.466 5.466 30 C 0.142 3.858 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.362 0.638 35 H 0.260 0.740 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 -5.289 29.718 30.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.090 0.910 4 C 0.070 3.930 5 H 0.091 0.909 6 N -0.382 5.382 7 C -0.375 4.375 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.578 5.578 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.202 1.202 15 C -0.195 4.195 16 C -0.026 4.026 17 N -0.346 5.346 18 C 0.326 3.674 19 O -0.415 6.415 20 C -0.132 4.132 21 C -0.035 4.035 22 C -0.115 4.115 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.104 4.104 26 C -0.085 4.085 27 C -0.197 4.197 28 C -0.044 4.044 29 N -0.173 5.173 30 C 0.021 3.979 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.947 -5.170 28.855 29.579 hybrid contribution 0.042 1.645 0.955 1.902 sum -3.905 -3.526 29.810 30.270 Atomic orbital electron populations 1.22037 0.94776 1.01896 1.02504 1.21899 0.94602 0.96490 0.84668 0.91020 1.21214 0.93901 0.91319 0.86552 0.90910 1.42710 1.82660 1.08187 1.04619 1.19022 1.39436 0.97271 0.81797 0.88993 1.24658 1.01390 0.97596 0.95168 1.69697 1.53844 1.34614 0.99665 0.86590 0.78341 0.86454 0.77417 1.21028 1.21650 1.20228 1.23510 1.00869 1.01937 0.93173 1.22397 0.94670 0.88527 0.96957 1.48600 1.52503 1.28699 1.04811 1.19911 0.80479 0.85094 0.81925 1.90684 1.39908 1.27884 1.83066 1.20531 1.01926 1.00942 0.89844 1.18978 0.92261 0.97274 0.94947 1.20797 0.99907 0.95599 0.95149 1.20874 0.96945 0.99513 0.95404 1.20942 0.93875 0.97472 0.99837 1.18802 0.95993 0.99524 0.96079 1.21439 0.92362 0.95466 0.99277 1.21874 1.01287 0.99425 0.97144 1.22964 0.92773 0.96298 0.92320 1.67995 1.03562 1.12946 1.32801 1.18602 0.93908 0.94269 0.91116 0.92790 0.92041 0.91348 0.80410 0.92970 0.90748 0.90099 0.91453 0.91272 0.87152 0.88266 0.85300 0.85414 0.85366 0.84558 0.84642 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.10 37.16 0.34 -2.28 16 2 C 0.13 2.22 3.22 -66.81 -0.22 2.01 16 3 H 0.07 1.38 7.68 -51.93 -0.40 0.98 16 4 C 0.18 3.38 3.11 -66.10 -0.21 3.17 16 5 H 0.07 1.39 7.84 -51.93 -0.41 0.98 16 6 N -0.74 -17.05 5.05 -51.66 -0.26 -17.32 16 7 C -0.25 -6.71 10.46 -15.06 -0.16 -6.86 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 10 N -0.93 -28.76 13.97 55.49 0.78 -27.98 16 11 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 15 C -0.15 -2.42 6.77 -24.58 -0.17 -2.58 16 16 C 0.10 1.24 6.68 -2.53 -0.02 1.22 16 17 N -0.61 -9.36 3.07 -162.82 -0.50 -9.86 16 18 C 0.54 8.43 7.64 -10.99 -0.08 8.34 16 19 O -0.54 -10.40 15.11 5.56 0.08 -10.31 16 20 C -0.09 -1.11 4.57 -29.04 -0.13 -1.24 16 21 C -0.03 -0.42 4.38 -104.51 -0.46 -0.88 16 22 C -0.09 -1.00 9.56 -39.94 -0.38 -1.38 16 23 C -0.11 -0.99 9.96 -39.92 -0.40 -1.39 16 24 C -0.10 -0.93 9.77 -39.52 -0.39 -1.32 16 25 C -0.10 -1.12 5.74 -106.80 -0.61 -1.74 16 26 C -0.06 -0.51 9.90 -39.22 -0.39 -0.90 16 27 C -0.18 -1.43 10.03 -39.78 -0.40 -1.83 16 28 C 0.13 1.29 11.15 -17.46 -0.19 1.09 16 29 N -0.47 -6.09 9.51 -10.98 -0.10 -6.19 16 30 C 0.14 1.87 6.58 -84.86 -0.56 1.31 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.11 6.92 -51.93 -0.36 0.75 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.36 8.41 5.37 -40.82 -0.22 8.19 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.70 7.47 -51.93 -0.39 0.32 16 40 H 0.11 1.25 7.72 -51.93 -0.40 0.85 16 41 H 0.10 0.92 7.74 -51.93 -0.40 0.52 16 42 H 0.13 1.12 8.04 -52.48 -0.42 0.69 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -35.19 385.46 -10.24 -45.43 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.82 Total: 8.25 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -4.51 Total: -5.11 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.09 Total: -61.35 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.19 -10.24 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986628231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.659 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds