Wall clock time and date at job start Tue Mar 31 2020 22:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.87605 * 2 1 4 4 C 1.54325 * 109.88304 * 238.98623 * 2 1 3 5 5 H 1.08994 * 110.87038 * 336.82305 * 4 2 1 6 6 N 1.46497 * 110.72131 * 100.02611 * 4 2 1 7 7 C 1.36935 * 120.00023 * 199.98015 * 6 4 2 8 8 H 1.07998 * 120.00224 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99817 * 180.02562 * 7 6 4 10 10 N 1.31627 * 119.99924 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00363 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46995 * 90.00180 * 11 9 7 13 13 H 1.48499 * 109.47530 * 210.00067 * 11 9 7 14 14 H 1.48494 * 109.47112 * 330.00526 * 11 9 7 15 15 C 1.55154 * 102.94303 * 218.39038 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 109.87458 * 121.13978 * 2 1 3 18 18 C 1.34774 * 125.79121 * 298.35971 * 17 2 1 19 19 O 1.21280 * 120.00501 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99753 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47230 * 179.97438 * 20 18 17 22 22 C 1.36113 * 120.12501 * 264.71969 * 21 20 18 23 23 C 1.39322 * 121.06735 * 179.67467 * 22 21 20 24 24 C 1.36174 * 120.86543 * 0.65180 * 23 22 21 25 25 C 1.40386 * 119.61425 * 359.66023 * 24 23 22 26 26 C 1.40778 * 121.37737 * 180.02562 * 25 24 23 27 27 C 1.36570 * 118.15300 * 179.97438 * 26 25 24 28 28 C 1.39337 * 119.93713 * 359.97438 * 27 26 25 29 29 N 1.31085 * 121.75289 * 0.03091 * 28 27 26 30 30 C 1.33688 * 121.32348 * 359.96914 * 29 28 27 31 31 H 1.08998 * 109.47192 * 181.01574 * 1 2 3 32 32 H 1.09005 * 109.47110 * 301.01774 * 1 2 3 33 33 H 1.09003 * 109.47228 * 61.01109 * 1 2 3 34 34 H 0.97001 * 120.00178 * 19.97534 * 6 4 2 35 35 H 0.97000 * 120.00215 * 179.97438 * 10 9 7 36 36 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 37 37 H 1.09000 * 111.03743 * 153.59413 * 15 4 2 38 38 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 39 39 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 40 40 H 1.09001 * 109.47204 * 299.99785 * 20 18 17 41 41 H 1.09000 * 109.47543 * 59.99762 * 20 18 17 42 42 H 1.08006 * 119.46431 * 0.02562 * 22 21 20 43 43 H 1.08001 * 119.56309 * 180.30375 * 23 22 21 44 44 H 1.07997 * 120.18751 * 179.63522 * 24 23 22 45 45 H 1.08001 * 120.92370 * 359.97438 * 26 25 24 46 46 H 1.07991 * 120.03343 * 179.97438 * 27 26 25 47 47 H 1.07994 * 119.12797 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3065 -1.4435 -1.6231 6 7 2.4554 0.1993 -2.2872 7 6 2.5574 -0.2175 -3.5876 8 1 2.3429 -1.2444 -3.8440 9 6 2.9375 0.6798 -4.5762 10 7 3.0360 0.2791 -5.8261 11 14 3.3093 2.4559 -4.1328 12 1 4.7507 2.5923 -3.8024 13 1 2.9805 3.3331 -5.2851 14 1 2.4924 2.8543 -2.9585 15 6 3.2876 -1.5133 -0.6946 16 6 2.8145 -1.8804 0.7341 17 7 2.0307 -0.7163 1.1856 18 6 1.8103 -0.3675 2.4686 19 8 1.1467 0.6148 2.7247 20 6 2.3884 -1.1982 3.5852 21 6 1.9987 -0.5981 4.9114 22 6 2.8462 0.2534 5.5514 23 6 2.5030 0.8247 6.7749 24 6 1.3135 0.5359 7.3716 25 6 0.4175 -0.3433 6.7431 26 6 -0.8222 -0.6672 7.3264 27 6 -1.6434 -1.5293 6.6575 28 6 -1.2443 -2.0607 5.4328 29 7 -0.0893 -1.7570 4.8925 30 6 0.7611 -0.9196 5.4950 31 1 -0.3633 -1.0275 0.0182 32 1 -0.3633 0.5296 0.8808 33 1 -0.3634 0.4981 -0.8989 34 1 2.6484 1.1216 -2.0570 35 1 3.3013 0.9062 -6.5170 36 1 4.1654 -0.8679 -0.6617 37 1 3.4858 -2.4092 -1.2829 38 1 2.1886 -2.7725 0.7089 39 1 3.6716 -2.0377 1.3888 40 1 2.0023 -2.2154 3.5188 41 1 3.4750 -1.2158 3.5000 42 1 3.7976 0.4945 5.1006 43 1 3.1919 1.5010 7.2590 44 1 1.0612 0.9804 8.3229 45 1 -1.1156 -0.2456 8.2764 46 1 -2.6011 -1.7990 7.0773 47 1 -1.9038 -2.7415 4.9153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986628231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:47 Heat of formation + Delta-G solvation = 17.290919 kcal Electronic energy + Delta-G solvation = -28933.922374 eV Core-core repulsion = 25080.904393 eV Total energy + Delta-G solvation = -3853.017981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.91892 -41.08361 -38.96130 -37.94659 -36.01206 -35.05745 -33.63671 -32.63260 -32.04306 -31.44307 -31.13960 -28.41708 -26.91596 -25.14755 -24.55336 -24.48933 -23.90774 -22.22638 -21.61214 -20.13427 -19.42539 -19.18030 -18.12089 -17.89066 -17.67322 -17.36328 -16.45615 -16.19910 -15.91732 -15.61352 -15.40290 -15.13679 -14.94937 -14.82837 -14.73495 -14.64926 -14.08709 -13.93472 -13.79023 -13.75819 -13.48622 -13.36608 -13.06227 -12.86740 -12.71355 -12.66394 -12.54103 -12.49621 -12.24372 -12.13257 -12.01638 -11.82059 -11.56365 -11.43216 -10.98609 -10.79665 -10.39408 -9.68841 -9.65863 -9.33268 -9.10718 -8.02857 -5.36807 -0.52499 -0.08389 1.03102 1.37801 1.38613 1.45640 1.68196 1.91565 2.11370 2.46811 3.14463 3.27055 3.40418 3.50667 3.54116 3.57270 3.80361 3.81908 3.90885 4.03390 4.08144 4.10495 4.14946 4.28205 4.32130 4.34899 4.41314 4.43459 4.48090 4.57333 4.62696 4.64147 4.74403 4.88881 4.89582 4.99106 5.09363 5.15185 5.16193 5.18226 5.22582 5.33692 5.42743 5.47307 5.48585 5.64716 5.76796 5.97181 6.20804 6.59064 7.01012 7.04632 7.20050 7.79821 7.98000 9.18060 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020772 B = 0.002513 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.615195 B =11140.763108 C =11503.177453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.133 3.867 3 H 0.052 0.948 4 C 0.174 3.826 5 H 0.068 0.932 6 N -0.745 5.745 7 C -0.223 4.223 8 H 0.067 0.933 9 C -0.058 4.058 10 N -0.980 5.980 11 Si 0.946 3.054 12 H -0.278 1.278 13 H -0.296 1.296 14 H -0.260 1.260 15 C -0.146 4.146 16 C 0.105 3.895 17 N -0.612 5.612 18 C 0.535 3.465 19 O -0.580 6.580 20 C -0.081 4.081 21 C -0.067 4.067 22 C -0.099 4.099 23 C -0.120 4.120 24 C -0.100 4.100 25 C -0.127 4.127 26 C -0.061 4.061 27 C -0.178 4.178 28 C 0.116 3.884 29 N -0.504 5.504 30 C 0.112 3.888 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.363 0.637 35 H 0.258 0.742 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.143 0.857 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.170 0.830 46 H 0.170 0.830 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -5.311 33.233 33.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.070 0.930 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.387 5.387 7 C -0.354 4.354 8 H 0.084 0.916 9 C -0.250 4.250 10 N -0.630 5.630 11 Si 0.774 3.226 12 H -0.204 1.204 13 H -0.223 1.223 14 H -0.186 1.186 15 C -0.187 4.187 16 C -0.017 4.017 17 N -0.346 5.346 18 C 0.326 3.674 19 O -0.460 6.460 20 C -0.120 4.120 21 C -0.069 4.069 22 C -0.119 4.119 23 C -0.138 4.138 24 C -0.119 4.119 25 C -0.129 4.129 26 C -0.086 4.086 27 C -0.197 4.197 28 C -0.056 4.056 29 N -0.212 5.212 30 C -0.009 4.009 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.196 0.804 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.133 0.867 41 H 0.146 0.854 42 H 0.161 0.839 43 H 0.173 0.827 44 H 0.177 0.823 45 H 0.187 0.813 46 H 0.187 0.813 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.767 -5.232 32.436 33.071 hybrid contribution -0.117 1.563 -0.041 1.568 sum -3.884 -3.669 32.395 32.832 Atomic orbital electron populations 1.21930 0.94652 1.02214 1.01454 1.21624 0.94621 0.95599 0.85315 0.92973 1.21380 0.95315 0.90850 0.85983 0.91403 1.42702 1.82965 1.09001 1.04056 1.18979 1.36925 0.95998 0.83506 0.91551 1.25372 1.02627 1.01866 0.95104 1.69855 1.56282 1.36008 1.00854 0.85544 0.78478 0.81298 0.77260 1.20393 1.22331 1.18559 1.23348 0.98844 1.01385 0.95109 1.22526 0.95928 0.87931 0.95361 1.48661 1.52591 1.29097 1.04252 1.20630 0.79667 0.84789 0.82357 1.90657 1.41778 1.29908 1.83646 1.20496 1.03226 1.00063 0.88209 1.19177 0.93087 0.99017 0.95577 1.21120 1.00206 0.94822 0.95706 1.21241 0.97655 0.99820 0.95079 1.21356 0.93368 0.96454 1.00696 1.19191 0.97535 1.00198 0.95976 1.21885 0.91376 0.95050 1.00334 1.22228 1.02499 0.98696 0.96282 1.23487 0.92359 0.96430 0.93312 1.67956 1.04876 1.14277 1.34119 1.18934 0.94423 0.95149 0.92353 0.91754 0.93315 0.92064 0.80391 0.93346 0.91500 0.89598 0.89543 0.87685 0.86715 0.85446 0.83874 0.82660 0.82315 0.81275 0.81290 0.80633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.10 71.98 0.66 -4.28 16 2 C 0.13 4.61 3.22 45.29 0.15 4.75 16 3 H 0.05 2.02 7.68 -2.39 -0.02 2.00 16 4 C 0.17 6.40 3.11 46.18 0.14 6.54 16 5 H 0.07 2.58 7.84 -2.39 -0.02 2.56 16 6 N -0.74 -34.23 5.05 -317.35 -1.60 -35.84 16 7 C -0.22 -12.35 10.46 84.03 0.88 -11.47 16 8 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 9 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 10 N -0.98 -62.03 13.97 21.65 0.30 -61.72 16 11 Si 0.95 45.90 27.74 68.60 1.90 47.81 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 14 H -0.26 -11.79 6.52 99.48 0.65 -11.14 16 15 C -0.15 -4.36 6.77 31.98 0.22 -4.14 16 16 C 0.10 2.37 6.68 86.85 0.58 2.95 16 17 N -0.61 -17.90 3.07 -787.43 -2.42 -20.32 16 18 C 0.54 16.31 7.64 87.66 0.67 16.98 16 19 O -0.58 -22.57 15.11 -3.03 -0.05 -22.61 16 20 C -0.08 -1.80 4.57 29.10 0.13 -1.67 16 21 C -0.07 -1.64 4.38 -19.79 -0.09 -1.72 16 22 C -0.10 -1.96 9.56 22.04 0.21 -1.75 16 23 C -0.12 -1.93 9.96 22.05 0.22 -1.71 16 24 C -0.10 -1.60 9.77 22.31 0.22 -1.38 16 25 C -0.13 -2.62 5.74 -21.28 -0.12 -2.74 16 26 C -0.06 -0.90 9.90 22.50 0.22 -0.67 16 27 C -0.18 -2.48 10.03 22.14 0.22 -2.26 16 28 C 0.12 2.22 11.15 85.07 0.95 3.17 16 29 N -0.50 -13.07 9.51 -188.64 -1.79 -14.86 16 30 C 0.11 2.90 6.58 40.29 0.27 3.16 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.78 6.92 -2.38 -0.02 1.77 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.36 16.62 5.37 -92.71 -0.50 16.12 16 35 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 1.71 7.47 -2.39 -0.02 1.69 16 40 H 0.11 2.44 7.72 -2.39 -0.02 2.42 16 41 H 0.13 2.01 7.74 -2.39 -0.02 1.99 16 42 H 0.14 2.22 8.04 -2.91 -0.02 2.19 16 43 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 44 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 46 H 0.17 1.08 8.06 -2.92 -0.02 1.06 16 47 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -79.62 385.46 2.75 -76.86 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.42 Total: 29.84 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 5.99 Total: 0.85 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -5.52 Total: -132.74 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.61 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.81 kcal Total: -79.62 2.75 -76.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986628231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.155 kcal (2) G-P(sol) polarization free energy of solvation -79.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds