Wall clock time and date at job start Tue Mar 31 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99767 * 2 1 4 4 C 1.54309 * 109.77265 * 121.15429 * 2 1 3 5 5 H 1.08994 * 110.93105 * 23.47080 * 4 2 1 6 6 N 1.46503 * 110.74342 * 260.20965 * 4 2 1 7 7 C 1.36934 * 119.99807 * 160.10982 * 6 4 2 8 8 H 1.08001 * 120.00465 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99887 * 180.02562 * 7 6 4 10 10 N 1.31622 * 119.99884 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99874 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46649 * 90.00507 * 11 9 7 13 13 H 1.48498 * 109.46892 * 210.00160 * 11 9 7 14 14 H 1.48495 * 109.47242 * 330.00397 * 11 9 7 15 15 C 1.55161 * 102.86276 * 141.88516 * 4 2 1 16 16 C 1.54909 * 101.57931 * 324.30306 * 15 4 2 17 17 N 1.47019 * 109.87865 * 238.90158 * 2 1 3 18 18 C 1.34783 * 125.65102 * 61.68479 * 17 2 1 19 19 O 1.21278 * 119.99525 * 359.70988 * 18 17 2 20 20 C 1.50697 * 120.00279 * 179.71293 * 18 17 2 21 21 C 1.50703 * 109.47093 * 179.97438 * 20 18 17 22 22 C 1.36122 * 120.12162 * 265.83223 * 21 20 18 23 23 C 1.39315 * 121.06015 * 180.02562 * 22 21 20 24 24 C 1.36183 * 120.87074 * 359.45238 * 23 22 21 25 25 C 1.40386 * 119.61224 * 359.97438 * 24 23 22 26 26 C 1.40775 * 121.38283 * 180.02562 * 25 24 23 27 27 C 1.36585 * 118.14867 * 179.69542 * 26 25 24 28 28 C 1.39328 * 119.93727 * 0.28133 * 27 26 25 29 29 N 1.31079 * 121.75813 * 359.97323 * 28 27 26 30 30 C 1.33695 * 121.32031 * 0.02562 * 29 28 27 31 31 H 1.08995 * 109.47159 * 179.64322 * 1 2 3 32 32 H 1.09001 * 109.46725 * 299.64465 * 1 2 3 33 33 H 1.09004 * 109.47156 * 59.64241 * 1 2 3 34 34 H 0.96993 * 120.00235 * 340.11422 * 6 4 2 35 35 H 0.96993 * 119.99652 * 179.97438 * 10 9 7 36 36 H 1.09005 * 111.00576 * 206.23312 * 15 4 2 37 37 H 1.08996 * 111.04021 * 82.38876 * 15 4 2 38 38 H 1.09002 * 110.36764 * 278.16743 * 16 15 4 39 39 H 1.09005 * 110.36775 * 155.85038 * 16 15 4 40 40 H 1.09003 * 109.47001 * 59.99847 * 20 18 17 41 41 H 1.08990 * 109.47155 * 299.99680 * 20 18 17 42 42 H 1.07997 * 119.47347 * 359.43344 * 22 21 20 43 43 H 1.07993 * 119.56620 * 179.47077 * 23 22 21 44 44 H 1.08001 * 120.18987 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.92882 * 359.97438 * 26 25 24 46 46 H 1.07994 * 120.03000 * 180.29595 * 27 26 25 47 47 H 1.08003 * 119.12434 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0520 -0.7512 1.2427 5 1 1.3050 -1.4512 1.6168 6 7 2.4468 0.1923 2.2916 7 6 2.5467 -0.2302 3.5903 8 1 2.3349 -1.2590 3.8413 9 6 2.9202 0.6640 4.5842 10 7 3.0168 0.2577 5.8325 11 14 3.2873 2.4433 4.1500 12 1 2.0398 3.2433 4.2449 13 1 4.2961 2.9855 5.0952 14 1 3.8176 2.5156 2.7648 15 6 3.2888 -1.5101 0.6933 16 6 2.8190 -1.8763 -0.7367 17 7 2.0299 -0.7141 -1.1839 18 6 1.8085 -0.3613 -2.4657 19 8 1.1412 0.6194 -2.7181 20 6 2.3900 -1.1855 -3.5853 21 6 1.9972 -0.5825 -4.9094 22 6 0.8933 -1.0343 -5.5652 23 6 0.5126 -0.4913 -6.7904 24 6 1.2296 0.5159 -7.3614 25 6 2.3672 1.0148 -6.7073 26 6 3.1352 2.0553 -7.2633 27 6 4.2255 2.4941 -6.5674 28 6 4.5525 1.9090 -5.3459 29 7 3.8381 0.9368 -4.8335 30 6 2.7590 0.4607 -5.4632 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3633 0.5083 0.8932 33 1 -0.3634 0.5194 -0.8868 34 1 2.6373 1.1162 2.0662 35 1 3.2781 0.8824 6.5269 36 1 3.4896 -2.4066 1.2800 37 1 4.1642 -0.8615 0.6628 38 1 2.1970 -2.7711 -0.7142 39 1 3.6776 -2.0265 -1.3913 40 1 2.0077 -2.2044 -3.5228 41 1 3.4764 -1.1992 -3.5000 42 1 0.3085 -1.8330 -5.1335 43 1 -0.3629 -0.8740 -7.2939 44 1 0.9242 0.9290 -8.3114 45 1 2.8672 2.4974 -8.2115 46 1 4.8333 3.2941 -6.9634 47 1 5.4176 2.2659 -4.8069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986628234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:55 Heat of formation + Delta-G solvation = 39.307830 kcal Electronic energy + Delta-G solvation = -28968.674747 eV Core-core repulsion = 25116.611491 eV Total energy + Delta-G solvation = -3852.063256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.15311 -39.89318 -37.76441 -37.07203 -34.27804 -34.21610 -32.01219 -31.34786 -30.88357 -30.75219 -29.64101 -27.49056 -25.32341 -24.42896 -23.80369 -22.86976 -22.62054 -21.25773 -20.15754 -18.80251 -18.49909 -17.56484 -17.16566 -17.04708 -16.79774 -16.04942 -15.19882 -14.92637 -14.66681 -14.53490 -14.28503 -14.13772 -14.01163 -13.66285 -13.38064 -13.27975 -13.17441 -12.73435 -12.68485 -12.38733 -12.14343 -11.95455 -11.91118 -11.83927 -11.70466 -11.43657 -11.28755 -11.16657 -10.88294 -10.69118 -10.59464 -10.34177 -10.02621 -9.66242 -9.64240 -9.53897 -8.96912 -8.95612 -8.39667 -8.37499 -7.32342 -5.80964 -3.17741 0.16613 0.63131 1.75910 2.70502 2.86152 3.19654 3.37568 3.41557 3.45440 3.90791 4.11097 4.26261 4.48729 4.54069 4.56716 4.66076 4.71916 4.81685 4.91462 4.99084 5.08931 5.11554 5.15587 5.23710 5.26381 5.39895 5.44612 5.55576 5.57781 5.61363 5.71056 5.75694 5.79713 5.84137 5.85379 5.94528 6.04121 6.15691 6.20869 6.24835 6.30034 6.39040 6.54320 6.56583 6.63808 6.68710 6.85063 7.74782 7.77782 7.93698 8.37793 8.39904 9.14750 9.87536 10.06229 11.36875 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.002709 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.283934 B =10332.560232 C =11126.841537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.072 0.928 4 C 0.181 3.819 5 H 0.073 0.927 6 N -0.740 5.740 7 C -0.246 4.246 8 H 0.092 0.908 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.154 4.154 16 C 0.097 3.903 17 N -0.611 5.611 18 C 0.537 3.463 19 O -0.538 6.538 20 C -0.093 4.093 21 C -0.034 4.034 22 C -0.094 4.094 23 C -0.110 4.110 24 C -0.102 4.102 25 C -0.102 4.102 26 C -0.060 4.060 27 C -0.177 4.177 28 C 0.130 3.870 29 N -0.466 5.466 30 C 0.142 3.858 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 -2.855 -29.695 29.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.090 0.910 4 C 0.070 3.930 5 H 0.091 0.909 6 N -0.382 5.382 7 C -0.375 4.375 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.578 5.578 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.203 1.203 15 C -0.195 4.195 16 C -0.026 4.026 17 N -0.346 5.346 18 C 0.326 3.674 19 O -0.415 6.415 20 C -0.132 4.132 21 C -0.035 4.035 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.104 4.104 26 C -0.086 4.086 27 C -0.197 4.197 28 C -0.043 4.043 29 N -0.173 5.173 30 C 0.021 3.979 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.155 0.845 46 H 0.154 0.846 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.733 -2.878 -28.833 28.986 hybrid contribution 0.215 1.751 -0.940 1.999 sum -0.518 -1.127 -29.773 29.799 Atomic orbital electron populations 1.22054 0.94792 1.01832 1.02626 1.21847 0.94536 0.96597 0.84744 0.91038 1.21220 0.93910 0.91348 0.86494 0.90887 1.42707 1.82773 1.08172 1.04519 1.19020 1.39643 0.97193 0.81678 0.88999 1.24653 1.01366 0.97602 0.95161 1.69695 1.53985 1.34598 0.99558 0.86596 0.78140 0.86620 0.77478 1.20950 1.21652 1.20276 1.23517 1.00959 1.01945 0.93109 1.22406 0.94646 0.88391 0.97142 1.48536 1.52310 1.28879 1.04827 1.19920 0.80378 0.85159 0.81978 1.90682 1.40047 1.27612 1.83185 1.20527 1.03746 0.99114 0.89855 1.18983 0.94655 0.94818 0.95058 1.20776 0.95303 1.00239 0.95044 1.20866 0.99790 0.96670 0.95507 1.20944 0.94350 0.96991 0.99775 1.18801 0.97387 0.98111 0.96124 1.21442 0.93676 0.94174 0.99283 1.21883 0.98858 1.01959 0.96982 1.22977 0.97467 0.91274 0.92567 1.68006 1.05126 1.11597 1.32614 1.18618 0.92946 0.95280 0.91077 0.92830 0.91277 0.91972 0.80396 0.92972 0.90138 0.90721 0.91534 0.91141 0.88253 0.87178 0.85321 0.85430 0.85373 0.84541 0.84619 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.10 37.16 0.34 -2.22 16 2 C 0.13 2.21 3.21 -66.96 -0.21 2.00 16 3 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16 4 C 0.18 3.39 3.11 -66.10 -0.21 3.18 16 5 H 0.07 1.38 7.84 -51.93 -0.41 0.97 16 6 N -0.74 -17.16 5.05 -51.66 -0.26 -17.42 16 7 C -0.25 -6.73 10.46 -15.06 -0.16 -6.88 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.82 13.97 55.49 0.78 -28.04 16 11 Si 0.88 22.12 27.74 -169.99 -4.71 17.41 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 15 C -0.15 -2.46 6.76 -24.58 -0.17 -2.63 16 16 C 0.10 1.24 6.69 -2.53 -0.02 1.22 16 17 N -0.61 -9.36 3.07 -163.03 -0.50 -9.86 16 18 C 0.54 8.42 7.64 -10.98 -0.08 8.34 16 19 O -0.54 -10.37 15.06 5.56 0.08 -10.29 16 20 C -0.09 -1.11 4.56 -29.04 -0.13 -1.24 16 21 C -0.03 -0.43 4.38 -104.51 -0.46 -0.88 16 22 C -0.09 -0.97 9.57 -39.94 -0.38 -1.36 16 23 C -0.11 -0.98 9.96 -39.92 -0.40 -1.38 16 24 C -0.10 -0.93 9.78 -39.51 -0.39 -1.31 16 25 C -0.10 -1.15 5.74 -106.80 -0.61 -1.76 16 26 C -0.06 -0.53 9.90 -39.22 -0.39 -0.92 16 27 C -0.18 -1.51 10.03 -39.77 -0.40 -1.91 16 28 C 0.13 1.39 11.14 -17.47 -0.19 1.19 16 29 N -0.47 -6.38 9.51 -10.98 -0.10 -6.49 16 30 C 0.14 1.91 6.58 -84.86 -0.56 1.35 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.07 6.88 -51.93 -0.36 0.72 16 34 H 0.36 8.51 5.37 -40.82 -0.22 8.29 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 40 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 41 H 0.11 1.28 7.42 -51.93 -0.39 0.90 16 42 H 0.13 1.06 8.05 -52.49 -0.42 0.64 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -35.35 385.38 -10.24 -45.59 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.82 Total: 8.36 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -4.51 Total: -5.07 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.09 Total: -61.81 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.35 -10.24 -45.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986628234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.899 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds