Wall clock time and date at job start Tue Mar 31 2020 22:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.99653 * 2 1 4 4 C 1.54321 * 109.87903 * 238.90480 * 2 1 3 5 5 H 1.08997 * 110.87489 * 336.82132 * 4 2 1 6 6 N 1.46503 * 110.71904 * 100.03058 * 4 2 1 7 7 C 1.36945 * 119.99804 * 199.97435 * 6 4 2 8 8 H 1.08000 * 119.99495 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99885 * 179.97438 * 7 6 4 10 10 N 1.31614 * 119.99931 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00029 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46875 * 270.00406 * 11 9 7 13 13 H 1.48500 * 109.47036 * 150.00550 * 11 9 7 14 14 H 1.48501 * 109.47286 * 29.99962 * 11 9 7 15 15 C 1.55161 * 102.93939 * 218.38765 * 4 2 1 16 16 C 1.54903 * 101.57980 * 35.50529 * 15 4 2 17 17 N 1.47020 * 109.88253 * 121.09639 * 2 1 3 18 18 C 1.34779 * 125.64646 * 298.39216 * 17 2 1 19 19 O 1.21728 * 119.99897 * 354.33261 * 18 17 2 20 20 C 1.46395 * 119.99769 * 174.32835 * 18 17 2 21 21 N 1.37633 * 126.32866 * 353.47954 * 20 18 17 22 22 H 0.97002 * 125.55199 * 359.97438 * 21 20 18 23 23 C 1.35641 * 108.89987 * 179.97438 * 21 20 18 24 24 C 1.35118 * 109.22083 * 359.97438 * 23 21 20 25 25 C 1.39100 * 126.32617 * 173.16335 * 20 18 17 26 26 C 1.48175 * 126.63401 * 0.04306 * 25 20 18 27 27 C 1.39450 * 120.12656 * 309.71961 * 26 25 20 28 28 C 1.37997 * 119.86357 * 179.74893 * 27 26 25 29 29 C 1.38339 * 120.12810 * 0.55195 * 28 27 26 30 30 C 1.38340 * 120.26792 * 359.70015 * 29 28 27 31 31 C 1.37983 * 120.13272 * 0.02562 * 30 29 28 32 32 H 1.09000 * 109.47367 * 181.09255 * 1 2 3 33 33 H 1.09002 * 109.47186 * 301.09501 * 1 2 3 34 34 H 1.08998 * 109.47148 * 61.09602 * 1 2 3 35 35 H 0.96998 * 120.00392 * 19.96767 * 6 4 2 36 36 H 0.97000 * 120.00361 * 179.97438 * 10 9 7 37 37 H 1.09006 * 111.00333 * 153.57783 * 15 4 2 38 38 H 1.08999 * 111.00256 * 277.42637 * 15 4 2 39 39 H 1.08995 * 110.36917 * 81.83078 * 16 15 4 40 40 H 1.09004 * 110.36945 * 204.04321 * 16 15 4 41 41 H 1.08001 * 125.38892 * 180.02562 * 23 21 20 42 42 H 1.08002 * 126.10090 * 180.02562 * 24 23 21 43 43 H 1.07997 * 120.07042 * 359.97438 * 27 26 25 44 44 H 1.07996 * 119.93098 * 180.25477 * 28 27 26 45 45 H 1.08006 * 119.86610 * 179.72271 * 29 28 27 46 46 H 1.08001 * 119.93015 * 180.02562 * 30 29 28 47 47 H 1.08004 * 120.06383 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3064 -1.4458 -1.6211 6 7 2.4554 0.1961 -2.2875 7 6 2.5575 -0.2225 -3.5874 8 1 2.3429 -1.2499 -3.8422 9 6 2.9366 0.6736 -4.5774 10 7 3.0341 0.2713 -5.8268 11 14 3.3069 2.4506 -4.1367 12 1 2.0618 3.2543 -4.2329 13 1 4.3202 2.9930 -5.0771 14 1 3.8331 2.5173 -2.7496 15 6 3.2876 -1.5142 -0.6924 16 6 2.8145 -1.8794 0.7367 17 7 2.0300 -0.7141 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 1.2297 0.6790 2.7194 20 6 2.2603 -1.2316 3.5528 21 7 2.8091 -2.4866 3.4183 22 1 2.9620 -2.9483 2.5790 23 6 3.1013 -2.9727 4.6504 24 6 2.7541 -2.0588 5.5831 25 6 2.2212 -0.9396 4.9123 26 6 1.7143 0.3057 5.5349 27 6 2.1535 1.5470 5.0755 28 6 1.6740 2.7035 5.6558 29 6 0.7681 2.6329 6.6990 30 6 0.3327 1.4043 7.1625 31 6 0.8008 0.2411 6.5864 32 1 -0.3634 -1.0275 0.0196 33 1 -0.3634 0.5308 0.8800 34 1 -0.3633 0.4967 -0.8996 35 1 2.6484 1.1187 -2.0586 36 1 3.2987 0.8976 -6.5187 37 1 3.4852 -2.4111 -1.2796 38 1 4.1654 -0.8688 -0.6605 39 1 2.1886 -2.7714 0.7128 40 1 3.6716 -2.0357 1.3918 41 1 3.5426 -3.9373 4.8538 42 1 2.8682 -2.1652 6.6517 43 1 2.8648 1.6031 4.2647 44 1 2.0103 3.6654 5.2982 45 1 0.3989 3.5407 7.1531 46 1 -0.3750 1.3556 7.9769 47 1 0.4598 -0.7174 6.9489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987330136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:24 Heat of formation + Delta-G solvation = 66.112288 kcal Electronic energy + Delta-G solvation = -29262.216645 eV Core-core repulsion = 25411.315717 eV Total energy + Delta-G solvation = -3850.900927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62413 -39.65961 -38.76840 -37.46060 -34.43378 -32.75372 -31.88981 -31.24790 -30.84796 -30.24732 -29.56526 -28.40511 -25.55886 -23.98659 -23.00922 -22.60074 -22.49592 -21.12244 -20.82704 -19.99526 -19.38920 -17.73222 -17.63441 -16.70792 -16.37222 -16.01516 -15.26927 -15.03245 -14.83572 -14.63972 -14.21839 -14.08774 -13.73959 -13.67966 -13.50693 -13.32461 -13.01588 -12.92895 -12.89649 -12.78511 -12.44230 -12.32135 -12.12639 -11.91102 -11.41277 -11.32198 -11.15290 -11.02266 -10.97552 -10.75456 -10.46401 -10.14878 -9.96117 -9.69575 -9.44335 -9.05012 -8.83137 -8.74021 -8.56307 -8.06011 -7.42037 -5.88228 -3.26162 1.00039 1.51270 1.63277 2.56017 2.79951 3.02946 3.31893 3.32583 3.35535 3.40573 3.91507 4.45494 4.49849 4.66007 4.67953 4.86047 4.93798 4.98668 4.99968 5.05023 5.15186 5.17120 5.19736 5.29857 5.49162 5.51671 5.54443 5.56080 5.62821 5.68229 5.74782 5.88153 5.91098 6.04979 6.06168 6.11712 6.23521 6.36642 6.37436 6.42210 6.46818 6.55016 6.59493 6.65235 6.69299 6.78939 7.05756 7.14735 7.53011 7.84832 8.18278 8.30000 9.06304 9.79014 9.96833 11.29327 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.002975 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.844279 B = 9408.017592 C =10600.447432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.077 0.923 4 C 0.182 3.818 5 H 0.075 0.925 6 N -0.738 5.738 7 C -0.250 4.250 8 H 0.092 0.908 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.882 3.118 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.152 4.152 16 C 0.084 3.916 17 N -0.611 5.611 18 C 0.597 3.403 19 O -0.516 6.516 20 C -0.030 4.030 21 N -0.541 5.541 22 H 0.421 0.579 23 C 0.017 3.983 24 C -0.196 4.196 25 C -0.049 4.049 26 C -0.012 4.012 27 C -0.068 4.068 28 C -0.123 4.123 29 C -0.122 4.122 30 C -0.129 4.129 31 C -0.106 4.106 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.172 0.828 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 -5.766 25.575 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.095 0.905 4 C 0.071 3.929 5 H 0.093 0.907 6 N -0.380 5.380 7 C -0.380 4.380 8 H 0.110 0.890 9 C -0.186 4.186 10 N -0.576 5.576 11 Si 0.712 3.288 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.193 4.193 16 C -0.039 4.039 17 N -0.346 5.346 18 C 0.386 3.614 19 O -0.392 6.392 20 C -0.144 4.144 21 N -0.141 5.141 22 H 0.263 0.737 23 C -0.118 4.118 24 C -0.220 4.220 25 C -0.058 4.058 26 C -0.013 4.013 27 C -0.086 4.086 28 C -0.141 4.141 29 C -0.140 4.140 30 C -0.147 4.147 31 C -0.124 4.124 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.197 0.803 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.189 0.811 42 H 0.162 0.838 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.435 -5.357 25.329 25.929 hybrid contribution 0.530 0.839 -0.269 1.028 sum -0.905 -4.518 25.060 25.480 Atomic orbital electron populations 1.22057 0.94451 1.01959 1.02895 1.21904 0.94702 0.96803 0.84173 0.90502 1.21209 0.93716 0.91388 0.86598 0.90725 1.42700 1.82491 1.08270 1.04547 1.18999 1.39994 0.97333 0.81645 0.89004 1.24658 1.01139 0.97670 0.95140 1.69688 1.53545 1.34700 0.99654 0.86599 0.78221 0.86492 0.77499 1.20829 1.21587 1.20291 1.23535 1.01333 1.02243 0.92165 1.22576 0.94331 0.88990 0.98029 1.48484 1.52416 1.28665 1.04988 1.16624 0.79680 0.85013 0.80091 1.90880 1.42311 1.23464 1.82548 1.20476 1.11218 0.88140 0.94585 1.42679 1.47741 1.14401 1.09249 0.73662 1.21938 1.05635 1.00635 0.83578 1.20877 1.07928 0.93879 0.99275 1.18535 1.02701 0.94616 0.89967 1.18064 0.96816 0.90990 0.95434 1.21095 0.98688 0.91404 0.97449 1.21029 0.98104 0.98198 0.96769 1.21126 0.98005 0.97539 0.97377 1.20962 1.00686 0.92496 1.00542 1.21094 0.97040 0.98270 0.96045 0.92809 0.91891 0.90902 0.80292 0.92870 0.89823 0.90418 0.91440 0.91487 0.81090 0.83816 0.86557 0.86338 0.86531 0.86369 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.10 37.16 0.34 -2.08 16 2 C 0.13 2.08 3.18 -66.95 -0.21 1.87 16 3 H 0.08 1.39 7.69 -51.93 -0.40 0.99 16 4 C 0.18 3.20 3.11 -66.09 -0.21 2.99 16 5 H 0.07 1.33 7.84 -51.93 -0.41 0.92 16 6 N -0.74 -16.36 5.05 -51.65 -0.26 -16.62 16 7 C -0.25 -6.64 10.46 -15.06 -0.16 -6.80 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 10 N -0.93 -28.19 13.97 55.49 0.78 -27.41 16 11 Si 0.88 21.54 27.74 -169.99 -4.71 16.82 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.41 6.52 56.52 0.37 -6.05 16 15 C -0.15 -2.23 6.77 -24.58 -0.17 -2.39 16 16 C 0.08 0.97 5.24 -2.53 -0.01 0.96 16 17 N -0.61 -8.81 3.07 -164.65 -0.50 -9.32 16 18 C 0.60 9.23 7.45 -12.98 -0.10 9.13 16 19 O -0.52 -9.35 13.05 5.16 0.07 -9.29 16 20 C -0.03 -0.40 6.84 -81.66 -0.56 -0.95 16 21 N -0.54 -5.15 5.36 -9.24 -0.05 -5.20 16 22 H 0.42 3.17 5.34 -40.82 -0.22 2.96 16 23 C 0.02 0.14 11.86 -16.98 -0.20 -0.06 16 24 C -0.20 -1.93 10.73 -39.67 -0.43 -2.35 16 25 C -0.05 -0.63 5.66 -104.47 -0.59 -1.23 16 26 C -0.01 -0.17 5.21 -104.91 -0.55 -0.71 16 27 C -0.07 -0.95 7.70 -39.22 -0.30 -1.26 16 28 C -0.12 -1.53 10.03 -39.63 -0.40 -1.92 16 29 C -0.12 -1.35 10.04 -39.51 -0.40 -1.75 16 30 C -0.13 -1.38 10.03 -39.64 -0.40 -1.78 16 31 C -0.11 -1.25 9.74 -39.23 -0.38 -1.63 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.03 7.09 -51.93 -0.37 0.66 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.36 8.14 5.37 -40.82 -0.22 7.92 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 40 H 0.07 0.65 6.21 -51.93 -0.32 0.33 16 41 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 1.73 7.56 -52.49 -0.40 1.33 16 44 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -32.91 379.84 -10.33 -43.24 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.56 Total: 11.81 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -4.81 Total: -9.76 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.04 Total: -58.55 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.29 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.91 -10.33 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987330136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.350 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds