Wall clock time and date at job start Tue Mar 31 2020 22:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.99653 * 2 1 4 4 C 1.54321 * 109.87903 * 238.90480 * 2 1 3 5 5 H 1.08997 * 110.87489 * 336.82132 * 4 2 1 6 6 N 1.46503 * 110.71904 * 100.03058 * 4 2 1 7 7 C 1.36945 * 119.99804 * 199.97435 * 6 4 2 8 8 H 1.08000 * 119.99495 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99885 * 179.97438 * 7 6 4 10 10 N 1.31614 * 119.99931 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00029 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46875 * 270.00406 * 11 9 7 13 13 H 1.48500 * 109.47036 * 150.00550 * 11 9 7 14 14 H 1.48501 * 109.47286 * 29.99962 * 11 9 7 15 15 C 1.55161 * 102.93939 * 218.38765 * 4 2 1 16 16 C 1.54903 * 101.57980 * 35.50529 * 15 4 2 17 17 N 1.47020 * 109.88253 * 121.09639 * 2 1 3 18 18 C 1.34779 * 125.64646 * 298.39216 * 17 2 1 19 19 O 1.21728 * 119.99897 * 354.33261 * 18 17 2 20 20 C 1.46395 * 119.99769 * 174.32835 * 18 17 2 21 21 N 1.37633 * 126.32866 * 353.47954 * 20 18 17 22 22 H 0.97002 * 125.55199 * 359.97438 * 21 20 18 23 23 C 1.35641 * 108.89987 * 179.97438 * 21 20 18 24 24 C 1.35118 * 109.22083 * 359.97438 * 23 21 20 25 25 C 1.39100 * 126.32617 * 173.16335 * 20 18 17 26 26 C 1.48175 * 126.63401 * 0.04306 * 25 20 18 27 27 C 1.39450 * 120.12656 * 309.71961 * 26 25 20 28 28 C 1.37997 * 119.86357 * 179.74893 * 27 26 25 29 29 C 1.38339 * 120.12810 * 0.55195 * 28 27 26 30 30 C 1.38340 * 120.26792 * 359.70015 * 29 28 27 31 31 C 1.37983 * 120.13272 * 0.02562 * 30 29 28 32 32 H 1.09000 * 109.47367 * 181.09255 * 1 2 3 33 33 H 1.09002 * 109.47186 * 301.09501 * 1 2 3 34 34 H 1.08998 * 109.47148 * 61.09602 * 1 2 3 35 35 H 0.96998 * 120.00392 * 19.96767 * 6 4 2 36 36 H 0.97000 * 120.00361 * 179.97438 * 10 9 7 37 37 H 1.09006 * 111.00333 * 153.57783 * 15 4 2 38 38 H 1.08999 * 111.00256 * 277.42637 * 15 4 2 39 39 H 1.08995 * 110.36917 * 81.83078 * 16 15 4 40 40 H 1.09004 * 110.36945 * 204.04321 * 16 15 4 41 41 H 1.08001 * 125.38892 * 180.02562 * 23 21 20 42 42 H 1.08002 * 126.10090 * 180.02562 * 24 23 21 43 43 H 1.07997 * 120.07042 * 359.97438 * 27 26 25 44 44 H 1.07996 * 119.93098 * 180.25477 * 28 27 26 45 45 H 1.08006 * 119.86610 * 179.72271 * 29 28 27 46 46 H 1.08001 * 119.93015 * 180.02562 * 30 29 28 47 47 H 1.08004 * 120.06383 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3064 -1.4458 -1.6211 6 7 2.4554 0.1961 -2.2875 7 6 2.5575 -0.2225 -3.5874 8 1 2.3429 -1.2499 -3.8422 9 6 2.9366 0.6736 -4.5774 10 7 3.0341 0.2713 -5.8268 11 14 3.3069 2.4506 -4.1367 12 1 2.0618 3.2543 -4.2329 13 1 4.3202 2.9930 -5.0771 14 1 3.8331 2.5173 -2.7496 15 6 3.2876 -1.5142 -0.6924 16 6 2.8145 -1.8794 0.7367 17 7 2.0300 -0.7141 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 1.2297 0.6790 2.7194 20 6 2.2603 -1.2316 3.5528 21 7 2.8091 -2.4866 3.4183 22 1 2.9620 -2.9483 2.5790 23 6 3.1013 -2.9727 4.6504 24 6 2.7541 -2.0588 5.5831 25 6 2.2212 -0.9396 4.9123 26 6 1.7143 0.3057 5.5349 27 6 2.1535 1.5470 5.0755 28 6 1.6740 2.7035 5.6558 29 6 0.7681 2.6329 6.6990 30 6 0.3327 1.4043 7.1625 31 6 0.8008 0.2411 6.5864 32 1 -0.3634 -1.0275 0.0196 33 1 -0.3634 0.5308 0.8800 34 1 -0.3633 0.4967 -0.8996 35 1 2.6484 1.1187 -2.0586 36 1 3.2987 0.8976 -6.5187 37 1 3.4852 -2.4111 -1.2796 38 1 4.1654 -0.8688 -0.6605 39 1 2.1886 -2.7714 0.7128 40 1 3.6716 -2.0357 1.3918 41 1 3.5426 -3.9373 4.8538 42 1 2.8682 -2.1652 6.6517 43 1 2.8648 1.6031 4.2647 44 1 2.0103 3.6654 5.2982 45 1 0.3989 3.5407 7.1531 46 1 -0.3750 1.3556 7.9769 47 1 0.4598 -0.7174 6.9489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987330136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:23 Heat of formation + Delta-G solvation = 46.651784 kcal Electronic energy + Delta-G solvation = -29263.060515 eV Core-core repulsion = 25411.315717 eV Total energy + Delta-G solvation = -3851.744798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.48235 -40.80019 -39.64032 -38.73167 -36.12144 -33.89097 -33.35266 -32.55369 -31.75242 -31.57251 -30.56785 -29.35560 -27.03486 -25.06807 -24.65167 -23.59035 -23.36983 -22.28729 -21.80491 -21.25080 -20.24486 -19.62592 -18.69412 -17.83994 -17.36714 -17.01958 -16.49769 -16.30585 -15.94391 -15.89399 -15.55683 -15.25850 -14.87250 -14.79667 -14.60157 -14.47600 -14.21677 -14.16695 -13.85867 -13.80948 -13.66837 -13.50819 -13.35811 -13.14311 -13.07125 -12.75455 -12.61302 -12.21881 -12.13287 -12.00614 -11.90641 -11.84621 -11.63264 -11.15505 -11.00153 -10.29508 -9.85623 -9.71637 -9.41977 -9.35886 -8.94304 -8.05016 -5.39172 0.07432 0.59993 0.76030 1.36066 1.37708 1.43649 1.74609 1.81720 2.20012 2.29819 2.44818 3.01135 3.24078 3.39968 3.45916 3.65191 3.83986 3.92062 4.06165 4.10222 4.16022 4.16690 4.23155 4.27556 4.31795 4.38547 4.42226 4.48566 4.58781 4.66860 4.76890 4.77569 4.80631 4.94008 5.11228 5.14202 5.14935 5.18787 5.23086 5.28041 5.34365 5.55676 5.66981 5.70798 5.74446 5.79463 5.92371 6.18326 6.18550 6.41361 6.51818 7.01958 7.05774 7.77338 7.94748 9.15727 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.002975 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.844279 B = 9408.017592 C =10600.447432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 H 0.054 0.946 4 C 0.175 3.825 5 H 0.076 0.924 6 N -0.744 5.744 7 C -0.224 4.224 8 H 0.069 0.931 9 C -0.055 4.055 10 N -0.978 5.978 11 Si 0.943 3.057 12 H -0.281 1.281 13 H -0.296 1.296 14 H -0.260 1.260 15 C -0.145 4.145 16 C 0.091 3.909 17 N -0.612 5.612 18 C 0.593 3.407 19 O -0.555 6.555 20 C -0.065 4.065 21 N -0.531 5.531 22 H 0.430 0.570 23 C 0.049 3.951 24 C -0.211 4.211 25 C -0.061 4.061 26 C -0.031 4.031 27 C -0.092 4.092 28 C -0.139 4.139 29 C -0.127 4.127 30 C -0.128 4.128 31 C -0.113 4.113 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.363 0.637 36 H 0.258 0.742 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.219 0.781 42 H 0.163 0.837 43 H 0.093 0.907 44 H 0.125 0.875 45 H 0.142 0.858 46 H 0.148 0.852 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.980 -7.621 28.869 29.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.030 3.970 3 H 0.072 0.928 4 C 0.066 3.934 5 H 0.093 0.907 6 N -0.387 5.387 7 C -0.355 4.355 8 H 0.087 0.913 9 C -0.247 4.247 10 N -0.628 5.628 11 Si 0.771 3.229 12 H -0.208 1.208 13 H -0.222 1.222 14 H -0.185 1.185 15 C -0.185 4.185 16 C -0.031 4.031 17 N -0.346 5.346 18 C 0.384 3.616 19 O -0.433 6.433 20 C -0.178 4.178 21 N -0.132 5.132 22 H 0.275 0.725 23 C -0.087 4.087 24 C -0.235 4.235 25 C -0.071 4.071 26 C -0.032 4.032 27 C -0.110 4.110 28 C -0.157 4.157 29 C -0.144 4.144 30 C -0.146 4.146 31 C -0.131 4.131 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.196 0.804 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.236 0.764 42 H 0.180 0.820 43 H 0.112 0.888 44 H 0.143 0.857 45 H 0.160 0.840 46 H 0.166 0.834 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.299 -7.251 28.673 29.604 hybrid contribution 0.460 1.305 -1.159 1.805 sum -0.839 -5.945 27.514 28.162 Atomic orbital electron populations 1.21959 0.93978 1.02562 1.01951 1.21621 0.94999 0.95712 0.84661 0.92825 1.21394 0.95152 0.90926 0.85951 0.90659 1.42710 1.82815 1.09103 1.04058 1.18977 1.37071 0.96096 0.83308 0.91265 1.25339 1.02577 1.01696 0.95126 1.69839 1.56213 1.35995 1.00800 0.85596 0.77748 0.81711 0.77808 1.20786 1.22224 1.18465 1.23352 0.99087 1.01805 0.94275 1.22709 0.95473 0.88837 0.96098 1.48469 1.52638 1.29233 1.04264 1.17006 0.79111 0.84912 0.80563 1.90850 1.44153 1.25225 1.83122 1.20091 1.14241 0.89704 0.93778 1.42641 1.47011 1.13168 1.10402 0.72514 1.22694 1.02443 1.01364 0.82178 1.21182 1.08339 0.93272 1.00658 1.18842 1.02657 0.95171 0.90402 1.18339 0.97513 0.91160 0.96181 1.21057 0.99521 0.92716 0.97739 1.21247 0.98777 0.98117 0.97512 1.21457 0.97277 0.98968 0.96743 1.21366 1.00475 0.91949 1.00793 1.21375 0.96581 0.99593 0.95587 0.91375 0.92978 0.91622 0.80414 0.93322 0.88808 0.91858 0.88258 0.88941 0.76403 0.81983 0.88844 0.85674 0.84001 0.83379 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.10 71.98 0.66 -3.91 16 2 C 0.13 4.38 3.18 45.34 0.14 4.52 16 3 H 0.05 2.00 7.69 -2.39 -0.02 1.98 16 4 C 0.17 6.04 3.11 46.18 0.14 6.19 16 5 H 0.08 2.61 7.84 -2.39 -0.02 2.60 16 6 N -0.74 -33.03 5.05 -317.32 -1.60 -34.63 16 7 C -0.22 -12.02 10.46 84.03 0.88 -11.14 16 8 H 0.07 3.99 8.06 -2.91 -0.02 3.96 16 9 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 10 N -0.98 -60.96 13.97 21.65 0.30 -60.65 16 11 Si 0.94 45.28 27.74 68.60 1.90 47.18 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 14 H -0.26 -11.54 6.52 99.48 0.65 -10.90 16 15 C -0.14 -4.01 6.77 31.99 0.22 -3.80 16 16 C 0.09 1.86 5.24 86.85 0.46 2.32 16 17 N -0.61 -17.11 3.07 -793.05 -2.43 -19.54 16 18 C 0.59 18.28 7.45 86.37 0.64 18.93 16 19 O -0.55 -20.88 13.05 -4.44 -0.06 -20.94 16 20 C -0.06 -1.61 6.84 40.56 0.28 -1.33 16 21 N -0.53 -8.25 5.36 -183.14 -0.98 -9.23 16 22 H 0.43 4.65 5.34 -92.71 -0.50 4.15 16 23 C 0.05 0.57 11.86 83.39 0.99 1.56 16 24 C -0.21 -3.50 10.73 22.21 0.24 -3.27 16 25 C -0.06 -1.50 5.66 -19.77 -0.11 -1.61 16 26 C -0.03 -0.84 5.21 -20.05 -0.10 -0.95 16 27 C -0.09 -2.69 7.70 22.50 0.17 -2.52 16 28 C -0.14 -3.52 10.03 22.24 0.22 -3.30 16 29 C -0.13 -2.65 10.04 22.32 0.22 -2.42 16 30 C -0.13 -2.50 10.03 22.23 0.22 -2.28 16 31 C -0.11 -2.51 9.74 22.50 0.22 -2.29 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.74 7.09 -2.39 -0.02 1.72 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.36 16.20 5.37 -92.71 -0.50 15.70 16 36 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.10 1.47 7.85 -2.39 -0.02 1.45 16 40 H 0.09 1.46 6.21 -2.38 -0.01 1.45 16 41 H 0.22 0.40 8.06 -2.91 -0.02 0.38 16 42 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.09 3.04 7.56 -2.91 -0.02 3.02 16 44 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 46 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -75.55 379.84 3.03 -72.52 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -0.05 Total: 33.30 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 5.96 Total: -8.00 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -4.71 Total: -124.06 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.06 Total: -20.94 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Total: -75.55 3.03 -72.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987330136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.168 kcal (2) G-P(sol) polarization free energy of solvation -75.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds