Wall clock time and date at job start Tue Mar 31 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.00453 * 2 1 4 4 C 1.54320 * 109.77376 * 121.15143 * 2 1 3 5 5 H 1.09005 * 110.92443 * 23.47208 * 4 2 1 6 6 N 1.46496 * 110.59013 * 260.14453 * 4 2 1 7 7 C 1.36944 * 119.99729 * 160.19187 * 6 4 2 8 8 H 1.08000 * 119.99963 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99590 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00158 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99683 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47485 * 59.99577 * 11 9 7 13 13 H 1.48498 * 109.46926 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46632 * 299.99727 * 11 9 7 15 15 C 1.55154 * 102.86418 * 141.88395 * 4 2 1 16 16 C 1.54909 * 101.58198 * 324.30604 * 15 4 2 17 17 N 1.47022 * 109.88648 * 238.90082 * 2 1 3 18 18 C 1.34778 * 125.64674 * 61.67535 * 17 2 1 19 19 O 1.21728 * 120.00076 * 5.28333 * 18 17 2 20 20 C 1.46389 * 119.99738 * 185.28342 * 18 17 2 21 21 N 1.37636 * 126.33166 * 6.49422 * 20 18 17 22 22 H 0.96993 * 125.55262 * 0.02562 * 21 20 18 23 23 C 1.35652 * 108.89690 * 180.27187 * 21 20 18 24 24 C 1.35117 * 109.22067 * 359.73191 * 23 21 20 25 25 C 1.39103 * 126.32681 * 186.31315 * 20 18 17 26 26 C 1.48181 * 126.63049 * 359.97438 * 25 20 18 27 27 C 1.39452 * 120.12749 * 129.71505 * 26 25 20 28 28 C 1.37987 * 119.86860 * 180.27648 * 27 26 25 29 29 C 1.38348 * 120.12669 * 359.52112 * 28 27 26 30 30 C 1.38338 * 120.26551 * 0.45746 * 29 28 27 31 31 C 1.37990 * 120.13437 * 359.79797 * 30 29 28 32 32 H 1.08999 * 109.47037 * 179.64378 * 1 2 3 33 33 H 1.09001 * 109.47420 * 299.64635 * 1 2 3 34 34 H 1.09001 * 109.46777 * 59.64335 * 1 2 3 35 35 H 0.96999 * 120.00475 * 340.19164 * 6 4 2 36 36 H 0.97001 * 119.99667 * 179.97438 * 10 9 7 37 37 H 1.08996 * 111.00824 * 206.22667 * 15 4 2 38 38 H 1.09002 * 111.03688 * 82.39046 * 15 4 2 39 39 H 1.08998 * 110.36811 * 278.16700 * 16 15 4 40 40 H 1.09004 * 110.36948 * 155.84805 * 16 15 4 41 41 H 1.07997 * 125.38182 * 179.75674 * 23 21 20 42 42 H 1.08002 * 126.09519 * 180.02562 * 24 23 21 43 43 H 1.08003 * 120.06902 * 0.02562 * 27 26 25 44 44 H 1.07997 * 119.93874 * 179.74939 * 28 27 26 45 45 H 1.08002 * 119.86455 * 180.23379 * 29 28 27 46 46 H 1.08008 * 119.93351 * 179.76703 * 30 29 28 47 47 H 1.08002 * 120.06242 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0520 -0.7512 1.2428 5 1 1.3049 -1.4512 1.6169 6 7 2.4472 0.1954 2.2887 7 6 2.5495 -0.2238 3.5884 8 1 2.3384 -1.2520 3.8424 9 6 2.9234 0.6733 4.5795 10 7 3.1802 1.9265 4.2700 11 14 3.0636 0.1014 6.3523 12 1 4.0779 -0.9792 6.4452 13 1 3.4750 1.2423 7.2094 14 1 1.7486 -0.4132 6.8118 15 6 3.2888 -1.5101 0.6935 16 6 2.8190 -1.8763 -0.7365 17 7 2.0301 -0.7141 -1.1838 18 6 1.8086 -0.3614 -2.4657 19 8 1.2258 0.6768 -2.7193 20 6 2.2689 -1.2268 -3.5529 21 7 2.8247 -2.4788 -3.4189 22 1 2.9786 -2.9407 -2.5800 23 6 3.1275 -2.9592 -4.6509 24 6 2.7741 -2.0472 -5.5831 25 6 2.2221 -0.9373 -4.9127 26 6 1.6984 0.3011 -5.5354 27 6 2.4646 0.9902 -6.4750 28 6 1.9740 2.1459 -7.0473 29 6 0.7205 2.6159 -6.6980 30 6 -0.0443 1.9364 -5.7669 31 6 0.4377 0.7823 -5.1839 32 1 -0.3633 -1.0276 -0.0064 33 1 -0.3634 0.5083 0.8931 34 1 -0.3633 0.5194 -0.8868 35 1 2.6365 1.1190 2.0607 36 1 3.4411 2.5535 4.9627 37 1 3.4896 -2.4064 1.2803 38 1 4.1642 -0.8614 0.6629 39 1 2.1971 -2.7712 -0.7141 40 1 3.6776 -2.0266 -1.3911 41 1 3.5790 -3.9190 -4.8542 42 1 2.8932 -2.1506 -6.6516 43 1 3.4417 0.6222 -6.7512 44 1 2.5681 2.6827 -7.7721 45 1 0.3392 3.5189 -7.1514 46 1 -1.0206 2.3101 -5.4954 47 1 -0.1602 0.2530 -4.4568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987330138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:31 Heat of formation + Delta-G solvation = 62.555109 kcal Electronic energy + Delta-G solvation = -29175.388912 eV Core-core repulsion = 25324.333734 eV Total energy + Delta-G solvation = -3851.055178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.56084 -39.55055 -38.70526 -37.34468 -34.27700 -32.69867 -31.79844 -31.11797 -30.77382 -30.01254 -29.31624 -28.25135 -25.37285 -23.89527 -23.28184 -22.54548 -22.42606 -21.09550 -20.80102 -19.77969 -19.31379 -17.64945 -17.30551 -16.54773 -16.30336 -15.86926 -15.11627 -14.99638 -14.87176 -14.64553 -14.22964 -13.75469 -13.63819 -13.56393 -13.50340 -13.26131 -13.03376 -12.87815 -12.82949 -12.81379 -12.29601 -12.24174 -11.95477 -11.69615 -11.24045 -11.10858 -11.09181 -10.95122 -10.89256 -10.68174 -10.35489 -10.12334 -9.90546 -9.75830 -9.37891 -9.00768 -8.74358 -8.65240 -8.50472 -7.98974 -7.10171 -5.86676 -3.17970 1.06608 1.58781 1.69029 2.61586 2.87911 3.10735 3.37357 3.40151 3.42462 3.43608 3.97886 4.49021 4.54676 4.71827 4.77501 4.92078 5.01594 5.07742 5.11997 5.13835 5.24629 5.25823 5.31043 5.38301 5.56214 5.60365 5.62087 5.68149 5.70428 5.82316 5.95700 5.98683 6.03410 6.11543 6.17523 6.19356 6.35318 6.43539 6.46367 6.51845 6.55678 6.63084 6.68522 6.72131 6.82425 6.86236 7.12767 7.20302 7.59228 7.63533 8.26859 8.30515 9.41767 9.95376 10.30071 11.35216 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002696 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.540636 B =10384.004493 C =11396.493179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 H 0.080 0.920 4 C 0.178 3.822 5 H 0.066 0.934 6 N -0.714 5.714 7 C -0.248 4.248 8 H 0.071 0.929 9 C -0.008 4.008 10 N -0.928 5.928 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.285 1.285 15 C -0.153 4.153 16 C 0.085 3.915 17 N -0.610 5.610 18 C 0.596 3.404 19 O -0.517 6.517 20 C -0.029 4.029 21 N -0.541 5.541 22 H 0.420 0.580 23 C 0.016 3.984 24 C -0.196 4.196 25 C -0.049 4.049 26 C -0.019 4.019 27 C -0.106 4.106 28 C -0.131 4.131 29 C -0.121 4.121 30 C -0.126 4.126 31 C -0.061 4.061 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.387 0.613 36 H 0.258 0.742 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.171 0.829 42 H 0.144 0.856 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 -9.360 -21.784 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.026 3.974 3 H 0.099 0.901 4 C 0.066 3.934 5 H 0.084 0.916 6 N -0.354 5.354 7 C -0.378 4.378 8 H 0.089 0.911 9 C -0.205 4.205 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.212 1.212 15 C -0.195 4.195 16 C -0.039 4.039 17 N -0.344 5.344 18 C 0.385 3.615 19 O -0.393 6.393 20 C -0.143 4.143 21 N -0.141 5.141 22 H 0.263 0.737 23 C -0.119 4.119 24 C -0.220 4.220 25 C -0.058 4.058 26 C -0.019 4.019 27 C -0.124 4.124 28 C -0.149 4.149 29 C -0.139 4.139 30 C -0.144 4.144 31 C -0.079 4.079 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.221 0.779 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.188 0.812 42 H 0.161 0.839 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.089 -8.884 -21.595 23.445 hybrid contribution 0.510 -0.369 1.355 1.494 sum -1.579 -9.254 -20.240 22.311 Atomic orbital electron populations 1.22038 0.94715 1.01574 1.02839 1.21911 0.94459 0.97058 0.83941 0.90149 1.21229 0.93312 0.91668 0.87201 0.91637 1.42342 1.81103 1.08928 1.03046 1.19138 1.39878 0.95032 0.83791 0.91056 1.24776 1.01917 0.95600 0.98193 1.69653 1.52287 1.02870 1.32745 0.86255 0.77838 0.77320 0.84649 1.21197 1.21624 1.21151 1.23587 1.01831 1.01994 0.92064 1.22560 0.94161 0.89004 0.98138 1.48493 1.52144 1.28718 1.05053 1.16618 0.79806 0.84905 0.80129 1.90869 1.42395 1.23598 1.82439 1.20500 1.11064 0.88133 0.94639 1.42680 1.47620 1.14571 1.09236 0.73698 1.21924 1.05616 1.00761 0.83628 1.20869 1.07565 0.94312 0.99241 1.18537 1.02514 0.94791 0.89956 1.18089 0.94106 0.93334 0.96399 1.21110 0.99233 0.95348 0.96709 1.20954 0.96251 0.96813 1.00928 1.21133 0.94868 0.99685 0.98252 1.21039 1.00128 0.95847 0.97416 1.21165 0.94775 0.95516 0.96436 0.93132 0.90930 0.92019 0.77881 0.93231 0.90348 0.90351 0.91647 0.91673 0.81164 0.83864 0.86346 0.86417 0.86580 0.86356 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.10 37.16 0.34 -2.16 16 2 C 0.13 2.25 3.18 -66.96 -0.21 2.03 16 3 H 0.08 1.60 7.68 -51.93 -0.40 1.20 16 4 C 0.18 3.28 3.11 -66.10 -0.21 3.07 16 5 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 6 N -0.71 -16.94 5.25 -51.65 -0.27 -17.21 16 7 C -0.25 -6.50 9.98 -15.05 -0.15 -6.65 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16 11 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C -0.15 -2.37 6.76 -24.58 -0.17 -2.54 16 16 C 0.09 1.04 5.25 -2.53 -0.01 1.03 16 17 N -0.61 -9.29 3.07 -164.65 -0.50 -9.79 16 18 C 0.60 9.63 7.55 -12.98 -0.10 9.54 16 19 O -0.52 -9.66 12.44 5.16 0.06 -9.60 16 20 C -0.03 -0.40 6.84 -81.66 -0.56 -0.96 16 21 N -0.54 -5.42 5.36 -9.24 -0.05 -5.47 16 22 H 0.42 3.38 5.34 -40.82 -0.22 3.16 16 23 C 0.02 0.13 11.86 -16.97 -0.20 -0.07 16 24 C -0.20 -2.01 10.73 -39.67 -0.43 -2.44 16 25 C -0.05 -0.66 5.67 -104.47 -0.59 -1.25 16 26 C -0.02 -0.26 5.34 -104.91 -0.56 -0.82 16 27 C -0.11 -1.30 9.74 -39.22 -0.38 -1.69 16 28 C -0.13 -1.49 10.03 -39.63 -0.40 -1.88 16 29 C -0.12 -1.39 10.04 -39.50 -0.40 -1.79 16 30 C -0.13 -1.61 10.03 -39.64 -0.40 -2.01 16 31 C -0.06 -0.87 7.61 -39.22 -0.30 -1.17 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.03 7.06 -51.93 -0.37 0.66 16 35 H 0.39 10.00 7.50 -40.82 -0.31 9.69 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 40 H 0.07 0.68 6.20 -51.93 -0.32 0.36 16 41 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 47 H 0.12 1.83 7.13 -52.49 -0.37 1.46 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -31.98 382.03 -10.69 -42.68 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -6.57 Total: 13.71 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -4.81 Total: -10.07 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.10 Total: -59.06 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.06 Total: -9.60 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.98 -10.69 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987330138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.232 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds