Wall clock time and date at job start Tue Mar 31 2020 22:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.00453 * 2 1 4 4 C 1.54320 * 109.77376 * 121.15143 * 2 1 3 5 5 H 1.09005 * 110.92443 * 23.47208 * 4 2 1 6 6 N 1.46496 * 110.59013 * 260.14453 * 4 2 1 7 7 C 1.36944 * 119.99729 * 160.19187 * 6 4 2 8 8 H 1.08000 * 119.99963 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99590 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00158 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99683 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47485 * 59.99577 * 11 9 7 13 13 H 1.48498 * 109.46926 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46632 * 299.99727 * 11 9 7 15 15 C 1.55154 * 102.86418 * 141.88395 * 4 2 1 16 16 C 1.54909 * 101.58198 * 324.30604 * 15 4 2 17 17 N 1.47022 * 109.88648 * 238.90082 * 2 1 3 18 18 C 1.34778 * 125.64674 * 61.67535 * 17 2 1 19 19 O 1.21728 * 120.00076 * 5.28333 * 18 17 2 20 20 C 1.46389 * 119.99738 * 185.28342 * 18 17 2 21 21 N 1.37636 * 126.33166 * 6.49422 * 20 18 17 22 22 H 0.96993 * 125.55262 * 0.02562 * 21 20 18 23 23 C 1.35652 * 108.89690 * 180.27187 * 21 20 18 24 24 C 1.35117 * 109.22067 * 359.73191 * 23 21 20 25 25 C 1.39103 * 126.32681 * 186.31315 * 20 18 17 26 26 C 1.48181 * 126.63049 * 359.97438 * 25 20 18 27 27 C 1.39452 * 120.12749 * 129.71505 * 26 25 20 28 28 C 1.37987 * 119.86860 * 180.27648 * 27 26 25 29 29 C 1.38348 * 120.12669 * 359.52112 * 28 27 26 30 30 C 1.38338 * 120.26551 * 0.45746 * 29 28 27 31 31 C 1.37990 * 120.13437 * 359.79797 * 30 29 28 32 32 H 1.08999 * 109.47037 * 179.64378 * 1 2 3 33 33 H 1.09001 * 109.47420 * 299.64635 * 1 2 3 34 34 H 1.09001 * 109.46777 * 59.64335 * 1 2 3 35 35 H 0.96999 * 120.00475 * 340.19164 * 6 4 2 36 36 H 0.97001 * 119.99667 * 179.97438 * 10 9 7 37 37 H 1.08996 * 111.00824 * 206.22667 * 15 4 2 38 38 H 1.09002 * 111.03688 * 82.39046 * 15 4 2 39 39 H 1.08998 * 110.36811 * 278.16700 * 16 15 4 40 40 H 1.09004 * 110.36948 * 155.84805 * 16 15 4 41 41 H 1.07997 * 125.38182 * 179.75674 * 23 21 20 42 42 H 1.08002 * 126.09519 * 180.02562 * 24 23 21 43 43 H 1.08003 * 120.06902 * 0.02562 * 27 26 25 44 44 H 1.07997 * 119.93874 * 179.74939 * 28 27 26 45 45 H 1.08002 * 119.86455 * 180.23379 * 29 28 27 46 46 H 1.08008 * 119.93351 * 179.76703 * 30 29 28 47 47 H 1.08002 * 120.06242 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0520 -0.7512 1.2428 5 1 1.3049 -1.4512 1.6169 6 7 2.4472 0.1954 2.2887 7 6 2.5495 -0.2238 3.5884 8 1 2.3384 -1.2520 3.8424 9 6 2.9234 0.6733 4.5795 10 7 3.1802 1.9265 4.2700 11 14 3.0636 0.1014 6.3523 12 1 4.0779 -0.9792 6.4452 13 1 3.4750 1.2423 7.2094 14 1 1.7486 -0.4132 6.8118 15 6 3.2888 -1.5101 0.6935 16 6 2.8190 -1.8763 -0.7365 17 7 2.0301 -0.7141 -1.1838 18 6 1.8086 -0.3614 -2.4657 19 8 1.2258 0.6768 -2.7193 20 6 2.2689 -1.2268 -3.5529 21 7 2.8247 -2.4788 -3.4189 22 1 2.9786 -2.9407 -2.5800 23 6 3.1275 -2.9592 -4.6509 24 6 2.7741 -2.0472 -5.5831 25 6 2.2221 -0.9373 -4.9127 26 6 1.6984 0.3011 -5.5354 27 6 2.4646 0.9902 -6.4750 28 6 1.9740 2.1459 -7.0473 29 6 0.7205 2.6159 -6.6980 30 6 -0.0443 1.9364 -5.7669 31 6 0.4377 0.7823 -5.1839 32 1 -0.3633 -1.0276 -0.0064 33 1 -0.3634 0.5083 0.8931 34 1 -0.3633 0.5194 -0.8868 35 1 2.6365 1.1190 2.0607 36 1 3.4411 2.5535 4.9627 37 1 3.4896 -2.4064 1.2803 38 1 4.1642 -0.8614 0.6629 39 1 2.1971 -2.7712 -0.7141 40 1 3.6776 -2.0266 -1.3911 41 1 3.5790 -3.9190 -4.8542 42 1 2.8932 -2.1506 -6.6516 43 1 3.4417 0.6222 -6.7512 44 1 2.5681 2.6827 -7.7721 45 1 0.3392 3.5189 -7.1514 46 1 -1.0206 2.3101 -5.4954 47 1 -0.1602 0.2530 -4.4568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987330138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:30 Heat of formation + Delta-G solvation = 44.094870 kcal Electronic energy + Delta-G solvation = -29176.189408 eV Core-core repulsion = 25324.333734 eV Total energy + Delta-G solvation = -3851.855674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.46690 -40.75246 -39.62613 -38.67046 -35.99488 -33.81752 -33.22178 -32.47410 -31.72437 -31.25914 -30.49503 -29.29112 -26.95022 -25.12278 -24.85476 -23.58186 -23.34520 -22.30582 -21.73546 -21.10014 -20.21549 -19.24657 -18.67093 -17.70912 -17.41232 -16.92160 -16.60219 -16.14837 -15.95277 -15.78296 -15.45603 -15.33195 -14.92812 -14.80770 -14.43934 -14.38995 -14.24266 -14.08541 -13.86478 -13.67477 -13.64499 -13.33766 -13.16618 -13.10737 -12.91074 -12.67987 -12.56594 -12.24070 -12.15933 -11.99334 -11.88198 -11.75399 -11.61597 -11.10700 -10.92314 -10.27399 -9.82151 -9.69541 -9.39732 -9.05979 -8.92802 -7.95207 -5.25986 0.08889 0.62620 0.76999 1.48378 1.51233 1.57204 1.77925 1.82914 2.21719 2.30829 2.56464 3.02538 3.34239 3.46014 3.61970 3.80647 3.89794 3.93960 4.10972 4.12924 4.18800 4.20996 4.28831 4.31723 4.34749 4.43246 4.44796 4.50967 4.60835 4.69122 4.79080 4.81374 4.81915 4.98135 5.13633 5.15596 5.15974 5.20544 5.26304 5.30901 5.39486 5.52570 5.57202 5.68839 5.73107 5.80840 5.93877 6.20173 6.24350 6.44900 6.53499 7.07647 7.30859 8.02152 8.26114 9.28126 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002696 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.540636 B =10384.004493 C =11396.493179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.137 3.863 3 H 0.043 0.957 4 C 0.173 3.827 5 H 0.075 0.925 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.085 0.915 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.274 1.274 13 H -0.301 1.301 14 H -0.277 1.277 15 C -0.145 4.145 16 C 0.092 3.908 17 N -0.612 5.612 18 C 0.590 3.410 19 O -0.556 6.556 20 C -0.065 4.065 21 N -0.531 5.531 22 H 0.430 0.570 23 C 0.050 3.950 24 C -0.212 4.212 25 C -0.061 4.061 26 C -0.039 4.039 27 C -0.114 4.114 28 C -0.132 4.132 29 C -0.126 4.126 30 C -0.141 4.141 31 C -0.083 4.083 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.370 0.630 36 H 0.250 0.750 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.220 0.780 42 H 0.163 0.837 43 H 0.136 0.864 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.127 0.873 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 -12.712 -23.515 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.061 0.939 4 C 0.063 3.937 5 H 0.093 0.907 6 N -0.369 5.369 7 C -0.370 4.370 8 H 0.103 0.897 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.200 1.200 13 H -0.228 1.228 14 H -0.203 1.203 15 C -0.185 4.185 16 C -0.031 4.031 17 N -0.345 5.345 18 C 0.382 3.618 19 O -0.435 6.435 20 C -0.178 4.178 21 N -0.132 5.132 22 H 0.275 0.725 23 C -0.086 4.086 24 C -0.235 4.235 25 C -0.070 4.070 26 C -0.040 4.040 27 C -0.132 4.132 28 C -0.150 4.150 29 C -0.144 4.144 30 C -0.159 4.159 31 C -0.101 4.101 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.202 0.798 36 H 0.059 0.941 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.237 0.763 42 H 0.180 0.820 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.160 0.840 46 H 0.145 0.855 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.073 -12.322 -23.342 26.417 hybrid contribution 0.178 0.627 1.728 1.847 sum -0.895 -11.695 -21.614 24.592 Atomic orbital electron populations 1.21918 0.94040 1.02445 1.01665 1.21596 0.94916 0.95375 0.84881 0.93927 1.21424 0.94880 0.91098 0.86299 0.90746 1.42526 1.81537 1.09115 1.03691 1.19585 1.37309 0.95347 0.84722 0.89685 1.25600 1.03110 0.95799 1.02265 1.69833 1.54763 1.04162 1.33453 0.85203 0.78136 0.76563 0.79789 1.20009 1.22794 1.20300 1.23378 0.99135 1.01666 0.94363 1.22717 0.95303 0.88899 0.96141 1.48487 1.52441 1.29328 1.04271 1.17058 0.79243 0.84879 0.80645 1.90841 1.44170 1.25453 1.83034 1.20071 1.14192 0.89788 0.93749 1.42632 1.46882 1.13259 1.10435 0.72515 1.22699 1.02337 1.01439 0.82156 1.21177 1.07969 0.93699 1.00653 1.18848 1.02393 0.95407 0.90363 1.18379 0.94179 0.94312 0.97104 1.21383 0.99796 0.95659 0.96368 1.21353 0.96315 0.96460 1.00876 1.21469 0.94927 1.00295 0.97667 1.21271 1.00962 0.95737 0.97963 1.21137 0.95509 0.96503 0.96970 0.91116 0.92157 0.93080 0.79784 0.94106 0.88450 0.92719 0.87997 0.89221 0.76315 0.81982 0.84658 0.83531 0.84027 0.85526 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.10 71.98 0.66 -4.14 16 2 C 0.14 4.90 3.18 45.34 0.14 5.04 16 3 H 0.04 1.84 7.68 -2.39 -0.02 1.82 16 4 C 0.17 6.34 3.11 46.18 0.14 6.48 16 5 H 0.07 2.62 7.84 -2.38 -0.02 2.60 16 6 N -0.73 -35.51 5.25 -317.33 -1.67 -37.18 16 7 C -0.24 -12.54 9.98 84.03 0.84 -11.70 16 8 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 10 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 11 Si 0.97 44.83 29.55 68.60 2.03 46.85 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 15 C -0.14 -4.26 6.76 31.98 0.22 -4.04 16 16 C 0.09 2.01 5.25 86.86 0.46 2.47 16 17 N -0.61 -18.50 3.07 -793.04 -2.43 -20.94 16 18 C 0.59 19.44 7.55 86.36 0.65 20.09 16 19 O -0.56 -22.12 12.44 -4.44 -0.06 -22.18 16 20 C -0.06 -1.70 6.84 40.56 0.28 -1.42 16 21 N -0.53 -8.81 5.36 -183.13 -0.98 -9.79 16 22 H 0.43 5.05 5.34 -92.71 -0.50 4.55 16 23 C 0.05 0.61 11.86 83.38 0.99 1.60 16 24 C -0.21 -3.73 10.73 22.21 0.24 -3.49 16 25 C -0.06 -1.57 5.67 -19.77 -0.11 -1.68 16 26 C -0.04 -1.11 5.34 -20.05 -0.11 -1.22 16 27 C -0.11 -2.72 9.74 22.50 0.22 -2.50 16 28 C -0.13 -2.81 10.03 22.24 0.22 -2.59 16 29 C -0.13 -2.80 10.04 22.32 0.22 -2.58 16 30 C -0.14 -3.74 10.03 22.23 0.22 -3.52 16 31 C -0.08 -2.51 7.61 22.50 0.17 -2.34 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.81 7.06 -2.39 -0.02 1.79 16 35 H 0.37 20.21 7.50 -92.71 -0.70 19.51 16 36 H 0.25 14.92 8.31 -92.71 -0.77 14.14 16 37 H 0.10 2.51 8.14 -2.39 -0.02 2.50 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.10 1.57 7.85 -2.39 -0.02 1.55 16 40 H 0.09 1.57 6.20 -2.38 -0.01 1.56 16 41 H 0.22 0.53 8.06 -2.91 -0.02 0.50 16 42 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 44 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 45 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 47 H 0.10 3.35 7.13 -2.91 -0.02 3.33 16 Total: -1.00 -74.56 382.03 2.91 -71.65 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -0.19 Total: 39.80 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 5.92 Total: -9.28 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -4.79 Total: -126.85 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.06 Total: -22.18 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -74.56 2.91 -71.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987330138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.748 kcal (2) G-P(sol) polarization free energy of solvation -74.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds