Wall clock time and date at job start Tue Mar 31 2020 22:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.00263 * 2 1 4 4 C 1.54327 * 109.88612 * 121.10484 * 2 1 3 5 5 C 1.55154 * 102.94290 * 97.22041 * 4 2 1 6 6 H 1.09002 * 111.00378 * 277.42832 * 5 4 2 7 7 N 1.46500 * 111.00420 * 153.61252 * 5 4 2 8 8 C 1.36934 * 119.99978 * 158.17667 * 7 5 4 9 9 H 1.07995 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99952 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99883 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47074 * 90.00096 * 12 10 8 14 14 H 1.48504 * 109.46998 * 210.00024 * 12 10 8 15 15 H 1.48498 * 109.47045 * 329.99768 * 12 10 8 16 16 C 1.54915 * 101.58176 * 35.50368 * 5 4 2 17 17 N 1.47029 * 109.87916 * 238.90938 * 2 1 3 18 18 C 1.34773 * 125.64802 * 59.57365 * 17 2 1 19 19 O 1.21288 * 120.00122 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00203 * 180.02562 * 18 17 2 21 21 C 1.50696 * 109.47254 * 179.97438 * 20 18 17 22 22 C 1.36259 * 120.25916 * 264.71971 * 21 20 18 23 23 C 1.39331 * 121.01932 * 179.76777 * 22 21 20 24 24 C 1.36207 * 121.08768 * 0.51160 * 23 22 21 25 25 C 1.40336 * 119.51163 * 359.75142 * 24 23 22 26 26 C 1.40443 * 122.08257 * 179.97438 * 25 24 23 27 27 N 1.31234 * 119.87903 * 180.02562 * 26 25 24 28 28 C 1.32615 * 122.78407 * 359.97438 * 27 26 25 29 29 C 1.36168 * 121.88087 * 0.02562 * 28 27 26 30 30 C 1.40185 * 120.26446 * 84.99571 * 21 20 18 31 31 H 1.09002 * 109.46599 * 298.89665 * 1 2 3 32 32 H 1.08996 * 109.47347 * 58.89449 * 1 2 3 33 33 H 1.08997 * 109.47232 * 178.90284 * 1 2 3 34 34 H 1.09004 * 110.71649 * 338.85624 * 4 2 1 35 35 H 1.08997 * 110.87056 * 215.65546 * 4 2 1 36 36 H 0.97001 * 120.00052 * 338.18451 * 7 5 4 37 37 H 0.97006 * 120.00093 * 179.97438 * 11 10 8 38 38 H 1.08995 * 110.36257 * 81.82999 * 16 5 4 39 39 H 1.08997 * 110.36405 * 204.14718 * 16 5 4 40 40 H 1.09000 * 109.46797 * 299.99397 * 20 18 17 41 41 H 1.08997 * 109.47378 * 59.99494 * 20 18 17 42 42 H 1.07998 * 119.48787 * 0.02562 * 22 21 20 43 43 H 1.08001 * 119.45702 * 180.24034 * 23 22 21 44 44 H 1.07993 * 120.24127 * 179.77087 * 24 23 22 45 45 H 1.08003 * 120.05884 * 0.02562 * 26 25 24 46 46 H 1.08000 * 119.05416 * 179.97438 * 28 27 26 47 47 H 1.07995 * 120.66489 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 1.2426 5 6 2.3518 -2.1696 0.6921 6 1 1.4451 -2.7737 0.6601 7 7 3.3931 -2.8318 1.4817 8 6 3.4963 -4.1972 1.4707 9 1 2.8104 -4.7859 0.8798 10 6 4.4827 -4.8247 2.2194 11 7 5.3182 -4.1073 2.9400 12 14 4.6239 -6.6873 2.2039 13 1 5.5367 -7.1054 1.1098 14 1 5.1655 -7.1534 3.5057 15 1 3.2819 -7.2836 1.9841 16 6 2.8567 -1.8497 -0.7371 17 7 2.0299 -0.7140 -1.1841 18 6 1.7754 -0.3841 -2.4658 19 8 1.0787 0.5761 -2.7180 20 6 2.3555 -1.2091 -3.5856 21 6 1.9228 -0.6338 -4.9096 22 6 0.8305 -1.1348 -5.5518 23 6 0.4135 -0.6118 -6.7740 24 6 1.0904 0.4091 -7.3698 25 6 2.2235 0.9473 -6.7407 26 6 2.9617 1.9996 -7.3065 27 7 4.0150 2.4697 -6.6807 28 6 4.4294 1.9933 -5.5145 29 6 3.7832 0.9745 -4.8833 30 6 2.6442 0.4171 -5.4929 31 1 -0.3632 0.4966 0.8998 32 1 -0.3634 0.5309 -0.8799 33 1 -0.3633 -1.0274 -0.0197 34 1 1.2918 -0.7893 2.0200 35 1 2.9652 -0.2846 1.6209 36 1 4.0094 -2.3030 2.0123 37 1 6.0073 -4.5457 3.4634 38 1 3.9090 -1.5667 -0.7131 39 1 2.7087 -2.7079 -1.3926 40 1 3.4435 -1.1950 -3.5212 41 1 1.9998 -2.2360 -3.5024 42 1 0.2769 -1.9471 -5.1044 43 1 -0.4582 -1.0256 -7.2592 44 1 0.7573 0.8016 -8.3191 45 1 2.6630 2.4211 -8.2550 46 1 5.3049 2.4254 -5.0527 47 1 4.1375 0.6020 -3.9336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989033793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:06 Heat of formation + Delta-G solvation = 31.733649 kcal Electronic energy + Delta-G solvation = -28887.147846 eV Core-core repulsion = 25034.756149 eV Total energy + Delta-G solvation = -3852.391697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.15182 -39.93233 -37.89687 -37.16737 -34.27503 -34.00928 -32.00367 -31.44802 -31.33098 -30.49554 -28.43390 -27.63367 -25.50962 -24.37211 -23.96109 -23.74373 -22.43790 -21.08354 -20.11366 -18.77180 -18.20398 -17.42835 -17.19759 -17.00019 -16.81716 -15.70391 -15.36791 -15.10868 -14.70887 -14.56748 -14.35468 -14.10459 -13.92765 -13.73383 -13.30656 -13.28858 -13.05244 -12.97253 -12.83151 -12.52383 -12.32612 -12.14039 -11.97732 -11.84291 -11.68340 -11.24790 -11.18087 -11.03369 -10.81542 -10.68886 -10.33246 -10.28847 -10.06441 -9.84543 -9.67524 -9.64616 -9.20255 -9.08436 -8.41626 -8.16946 -7.16794 -5.92089 -3.23397 0.19000 0.76650 1.74023 2.75041 2.84282 3.20490 3.34346 3.40344 3.41794 3.93537 4.19507 4.30534 4.44764 4.49828 4.60048 4.66849 4.70847 4.84527 4.94880 5.05850 5.08440 5.09653 5.19860 5.23975 5.29633 5.41587 5.50934 5.54105 5.56891 5.62110 5.63362 5.79621 5.79884 5.83267 5.87395 6.04511 6.05962 6.15869 6.18445 6.23376 6.32583 6.38492 6.46583 6.47081 6.58822 6.66346 6.77907 7.56121 7.74491 7.81657 8.24887 8.31713 9.37358 9.90642 10.25381 11.29760 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.002630 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.856122 B =10641.869870 C =11049.019336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.069 0.931 4 C -0.138 4.138 5 C 0.174 3.826 6 H 0.066 0.934 7 N -0.712 5.712 8 C -0.251 4.251 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.070 3.930 17 N -0.609 5.609 18 C 0.529 3.471 19 O -0.542 6.542 20 C -0.104 4.104 21 C -0.049 4.049 22 C -0.089 4.089 23 C -0.113 4.113 24 C -0.093 4.093 25 C -0.111 4.111 26 C 0.142 3.858 27 N -0.490 5.490 28 C 0.073 3.927 29 C -0.146 4.146 30 C -0.007 4.007 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.162 0.838 46 H 0.152 0.848 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 8.896 -17.525 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.087 0.913 4 C -0.176 4.176 5 C 0.062 3.938 6 H 0.084 0.916 7 N -0.352 5.352 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.056 4.056 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.420 6.420 20 C -0.143 4.143 21 C -0.050 4.050 22 C -0.109 4.109 23 C -0.131 4.131 24 C -0.113 4.113 25 C -0.113 4.113 26 C -0.030 4.030 27 N -0.198 5.198 28 C -0.070 4.070 29 C -0.166 4.166 30 C -0.013 4.013 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.179 0.821 46 H 0.169 0.831 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.773 9.903 -17.945 21.921 hybrid contribution -0.022 -1.676 0.695 1.814 sum -7.795 8.228 -17.250 20.640 Atomic orbital electron populations 1.22123 0.95057 1.02252 1.02397 1.21481 0.94358 0.95876 0.84669 0.91319 1.23007 1.01751 0.97029 0.95859 1.21263 0.92769 0.91252 0.88513 0.91630 1.42329 1.35258 1.04264 1.53338 1.19231 1.12439 0.82648 1.23825 0.90967 1.24775 0.98131 0.98043 0.99460 1.69654 1.20538 1.34330 1.33042 0.86189 0.77701 0.85201 0.77061 1.21552 1.21671 1.20637 1.23547 0.95022 0.87036 0.99983 1.48643 1.50351 1.30865 1.04457 1.19992 0.81007 0.84987 0.82301 1.90689 1.38976 1.28906 1.83380 1.20684 1.03076 1.00460 0.90101 1.19087 0.95708 0.95349 0.94816 1.20851 0.95311 0.99726 0.94983 1.20869 0.99949 0.96848 0.95478 1.20934 0.94184 0.96411 0.99723 1.18989 0.97914 0.98770 0.95635 1.23157 0.89894 0.91483 0.98466 1.67398 1.14402 1.28622 1.09354 1.22141 0.99393 0.94206 0.91236 1.21922 0.95677 0.98092 1.00905 1.17938 0.94798 0.94966 0.93556 0.91993 0.91533 0.92472 0.90152 0.90560 0.77825 0.93266 0.91129 0.91276 0.87754 0.87483 0.85569 0.85506 0.85036 0.82135 0.83054 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.05 37.16 0.34 -1.81 16 2 C 0.14 2.00 3.49 -66.95 -0.23 1.76 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.06 6.13 -24.90 -0.15 -2.21 16 5 C 0.17 3.08 3.70 -65.78 -0.24 2.84 16 6 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 7 N -0.71 -16.12 5.26 -51.35 -0.27 -16.39 16 8 C -0.25 -6.39 9.97 -15.06 -0.15 -6.54 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.45 13.06 55.49 0.72 -25.72 16 12 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 16 C 0.07 1.09 6.39 -2.53 -0.02 1.08 16 17 N -0.61 -8.93 3.08 -163.01 -0.50 -9.43 16 18 C 0.53 7.79 7.62 -10.99 -0.08 7.71 16 19 O -0.54 -9.54 14.94 5.55 0.08 -9.46 16 20 C -0.10 -1.23 4.29 -29.04 -0.12 -1.35 16 21 C -0.05 -0.60 4.38 -104.61 -0.46 -1.06 16 22 C -0.09 -0.95 9.58 -39.89 -0.38 -1.33 16 23 C -0.11 -1.04 9.94 -39.91 -0.40 -1.43 16 24 C -0.09 -0.85 9.81 -39.52 -0.39 -1.24 16 25 C -0.11 -1.27 5.74 -106.86 -0.61 -1.88 16 26 C 0.14 1.51 11.05 -16.98 -0.19 1.33 16 27 N -0.49 -6.10 10.30 -13.15 -0.14 -6.24 16 28 C 0.07 0.87 11.07 -17.96 -0.20 0.67 16 29 C -0.15 -1.81 9.36 -39.40 -0.37 -2.18 16 30 C -0.01 -0.09 5.75 -106.82 -0.61 -0.71 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.99 6.77 -51.93 -0.35 0.64 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.14 7.83 -51.93 -0.41 0.73 16 35 H 0.08 1.16 7.99 -51.93 -0.42 0.75 16 36 H 0.39 9.40 7.73 -40.82 -0.32 9.09 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.02 7.48 -51.93 -0.39 0.63 16 40 H 0.10 1.13 6.80 -51.93 -0.35 0.78 16 41 H 0.11 1.09 7.75 -51.93 -0.40 0.69 16 42 H 0.13 1.13 8.05 -52.49 -0.42 0.71 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.16 1.15 8.06 -52.48 -0.42 0.72 16 46 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 47 H 0.13 1.53 6.65 -52.49 -0.35 1.18 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -31.68 386.41 -10.42 -42.10 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.75 Total: 9.87 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -4.37 Total: -6.65 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.18 Total: -57.78 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.68 -10.42 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989033793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.834 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds