Wall clock time and date at job start Tue Mar 31 2020 22:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.00263 * 2 1 4 4 C 1.54327 * 109.88612 * 121.10484 * 2 1 3 5 5 C 1.55154 * 102.94290 * 97.22041 * 4 2 1 6 6 H 1.09002 * 111.00378 * 277.42832 * 5 4 2 7 7 N 1.46500 * 111.00420 * 153.61252 * 5 4 2 8 8 C 1.36934 * 119.99978 * 158.17667 * 7 5 4 9 9 H 1.07995 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99952 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99883 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47074 * 90.00096 * 12 10 8 14 14 H 1.48504 * 109.46998 * 210.00024 * 12 10 8 15 15 H 1.48498 * 109.47045 * 329.99768 * 12 10 8 16 16 C 1.54915 * 101.58176 * 35.50368 * 5 4 2 17 17 N 1.47029 * 109.87916 * 238.90938 * 2 1 3 18 18 C 1.34773 * 125.64802 * 59.57365 * 17 2 1 19 19 O 1.21288 * 120.00122 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00203 * 180.02562 * 18 17 2 21 21 C 1.50696 * 109.47254 * 179.97438 * 20 18 17 22 22 C 1.36259 * 120.25916 * 264.71971 * 21 20 18 23 23 C 1.39331 * 121.01932 * 179.76777 * 22 21 20 24 24 C 1.36207 * 121.08768 * 0.51160 * 23 22 21 25 25 C 1.40336 * 119.51163 * 359.75142 * 24 23 22 26 26 C 1.40443 * 122.08257 * 179.97438 * 25 24 23 27 27 N 1.31234 * 119.87903 * 180.02562 * 26 25 24 28 28 C 1.32615 * 122.78407 * 359.97438 * 27 26 25 29 29 C 1.36168 * 121.88087 * 0.02562 * 28 27 26 30 30 C 1.40185 * 120.26446 * 84.99571 * 21 20 18 31 31 H 1.09002 * 109.46599 * 298.89665 * 1 2 3 32 32 H 1.08996 * 109.47347 * 58.89449 * 1 2 3 33 33 H 1.08997 * 109.47232 * 178.90284 * 1 2 3 34 34 H 1.09004 * 110.71649 * 338.85624 * 4 2 1 35 35 H 1.08997 * 110.87056 * 215.65546 * 4 2 1 36 36 H 0.97001 * 120.00052 * 338.18451 * 7 5 4 37 37 H 0.97006 * 120.00093 * 179.97438 * 11 10 8 38 38 H 1.08995 * 110.36257 * 81.82999 * 16 5 4 39 39 H 1.08997 * 110.36405 * 204.14718 * 16 5 4 40 40 H 1.09000 * 109.46797 * 299.99397 * 20 18 17 41 41 H 1.08997 * 109.47378 * 59.99494 * 20 18 17 42 42 H 1.07998 * 119.48787 * 0.02562 * 22 21 20 43 43 H 1.08001 * 119.45702 * 180.24034 * 23 22 21 44 44 H 1.07993 * 120.24127 * 179.77087 * 24 23 22 45 45 H 1.08003 * 120.05884 * 0.02562 * 26 25 24 46 46 H 1.08000 * 119.05416 * 179.97438 * 28 27 26 47 47 H 1.07995 * 120.66489 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 1.2426 5 6 2.3518 -2.1696 0.6921 6 1 1.4451 -2.7737 0.6601 7 7 3.3931 -2.8318 1.4817 8 6 3.4963 -4.1972 1.4707 9 1 2.8104 -4.7859 0.8798 10 6 4.4827 -4.8247 2.2194 11 7 5.3182 -4.1073 2.9400 12 14 4.6239 -6.6873 2.2039 13 1 5.5367 -7.1054 1.1098 14 1 5.1655 -7.1534 3.5057 15 1 3.2819 -7.2836 1.9841 16 6 2.8567 -1.8497 -0.7371 17 7 2.0299 -0.7140 -1.1841 18 6 1.7754 -0.3841 -2.4658 19 8 1.0787 0.5761 -2.7180 20 6 2.3555 -1.2091 -3.5856 21 6 1.9228 -0.6338 -4.9096 22 6 0.8305 -1.1348 -5.5518 23 6 0.4135 -0.6118 -6.7740 24 6 1.0904 0.4091 -7.3698 25 6 2.2235 0.9473 -6.7407 26 6 2.9617 1.9996 -7.3065 27 7 4.0150 2.4697 -6.6807 28 6 4.4294 1.9933 -5.5145 29 6 3.7832 0.9745 -4.8833 30 6 2.6442 0.4171 -5.4929 31 1 -0.3632 0.4966 0.8998 32 1 -0.3634 0.5309 -0.8799 33 1 -0.3633 -1.0274 -0.0197 34 1 1.2918 -0.7893 2.0200 35 1 2.9652 -0.2846 1.6209 36 1 4.0094 -2.3030 2.0123 37 1 6.0073 -4.5457 3.4634 38 1 3.9090 -1.5667 -0.7131 39 1 2.7087 -2.7079 -1.3926 40 1 3.4435 -1.1950 -3.5212 41 1 1.9998 -2.2360 -3.5024 42 1 0.2769 -1.9471 -5.1044 43 1 -0.4582 -1.0256 -7.2592 44 1 0.7573 0.8016 -8.3191 45 1 2.6630 2.4211 -8.2550 46 1 5.3049 2.4254 -5.0527 47 1 4.1375 0.6020 -3.9336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989033793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:04 Heat of formation + Delta-G solvation = 14.022936 kcal Electronic energy + Delta-G solvation = -28887.915840 eV Core-core repulsion = 25034.756149 eV Total energy + Delta-G solvation = -3853.159691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.00904 -41.09891 -38.99761 -38.17235 -35.97122 -34.89641 -33.31543 -32.94968 -32.23380 -31.35843 -29.98775 -28.56266 -26.73656 -25.79390 -25.16290 -24.55569 -23.61087 -22.16806 -21.37950 -19.95405 -19.27508 -18.97996 -18.18080 -18.00794 -17.71015 -16.99336 -16.63813 -16.30729 -15.93876 -15.58690 -15.35038 -15.16277 -15.11764 -14.77461 -14.69973 -14.58035 -14.27019 -14.17219 -13.85589 -13.61215 -13.33591 -13.13758 -13.01930 -12.96212 -12.91469 -12.78776 -12.59924 -12.25461 -12.13693 -12.05611 -11.93509 -11.70816 -11.45371 -11.17712 -11.01464 -10.78318 -10.49878 -10.01056 -9.68037 -9.04841 -8.97610 -7.93896 -5.23741 -0.60627 -0.05849 0.91809 1.51608 1.51935 1.59205 1.60118 1.92513 2.17024 2.57871 3.08573 3.38140 3.40653 3.45953 3.51276 3.70273 3.84286 3.85694 3.91317 3.95706 3.97094 4.05546 4.11553 4.21307 4.31814 4.34737 4.40567 4.46725 4.48194 4.51801 4.71230 4.71728 4.78857 4.83385 4.83838 4.91398 5.02091 5.07821 5.12062 5.14410 5.24702 5.33169 5.44285 5.46316 5.52298 5.56176 5.66862 5.92019 6.27052 6.53875 6.97657 7.13886 7.35014 8.06496 8.30189 9.28984 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.002630 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.856122 B =10641.869870 C =11049.019336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 H 0.067 0.933 4 C -0.126 4.126 5 C 0.168 3.832 6 H 0.066 0.934 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.081 0.919 10 C -0.070 4.070 11 N -0.967 5.967 12 Si 0.968 3.032 13 H -0.288 1.288 14 H -0.300 1.300 15 H -0.268 1.268 16 C 0.084 3.916 17 N -0.608 5.608 18 C 0.530 3.470 19 O -0.570 6.570 20 C -0.098 4.098 21 C -0.076 4.076 22 C -0.091 4.091 23 C -0.120 4.120 24 C -0.085 4.085 25 C -0.131 4.131 26 C 0.145 3.855 27 N -0.515 5.515 28 C 0.063 3.937 29 C -0.165 4.165 30 C -0.029 4.029 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.141 0.859 43 H 0.158 0.842 44 H 0.168 0.832 45 H 0.196 0.804 46 H 0.165 0.835 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 8.460 -19.566 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.058 3.942 6 H 0.084 0.916 7 N -0.363 5.363 8 C -0.372 4.372 9 H 0.099 0.901 10 C -0.263 4.263 11 N -0.617 5.617 12 Si 0.797 3.203 13 H -0.215 1.215 14 H -0.227 1.227 15 H -0.193 1.193 16 C -0.041 4.041 17 N -0.342 5.342 18 C 0.320 3.680 19 O -0.450 6.450 20 C -0.137 4.137 21 C -0.077 4.077 22 C -0.110 4.110 23 C -0.138 4.138 24 C -0.105 4.105 25 C -0.133 4.133 26 C -0.026 4.026 27 N -0.224 5.224 28 C -0.079 4.079 29 C -0.185 4.185 30 C -0.034 4.034 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.209 0.791 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.142 0.858 42 H 0.159 0.841 43 H 0.176 0.824 44 H 0.185 0.815 45 H 0.213 0.787 46 H 0.182 0.818 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.689 9.474 -20.020 24.175 hybrid contribution 0.443 -1.459 1.234 1.962 sum -9.247 8.015 -18.786 22.420 Atomic orbital electron populations 1.22040 0.93990 1.02226 1.02649 1.21512 0.95141 0.95624 0.84207 0.91495 1.22907 1.01982 0.95182 0.96406 1.21414 0.91408 0.92274 0.89128 0.91610 1.42453 1.36160 1.03571 1.54076 1.19617 1.11401 0.84054 1.22172 0.90081 1.25505 0.98666 1.01852 1.00233 1.69801 1.21580 1.35644 1.34693 0.85225 0.77947 0.80808 0.76280 1.21474 1.22744 1.19300 1.23196 0.94435 0.87738 0.98761 1.48650 1.50190 1.30528 1.04814 1.20473 0.80294 0.84705 0.82550 1.90671 1.40373 1.30270 1.83703 1.20674 1.03237 1.00657 0.89109 1.19177 0.96949 0.96297 0.95259 1.21207 0.94563 0.99729 0.95515 1.21266 1.00827 0.96713 0.94960 1.21372 0.92773 0.95675 1.00659 1.19322 0.99065 0.99334 0.95575 1.23765 0.88874 0.90758 0.99208 1.67452 1.15586 1.29521 1.09794 1.22396 0.99872 0.94225 0.91443 1.21986 0.96398 0.98870 1.01248 1.18230 0.95137 0.95519 0.94536 0.90058 0.93016 0.92480 0.88973 0.90991 0.79092 0.94051 0.92117 0.90129 0.87247 0.85766 0.84139 0.82397 0.81469 0.78699 0.81814 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.05 71.98 0.65 -3.18 16 2 C 0.14 3.84 3.49 45.34 0.16 3.99 16 3 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.13 -3.66 6.13 31.78 0.19 -3.47 16 5 C 0.17 5.79 3.70 46.38 0.17 5.96 16 6 H 0.07 2.29 8.11 -2.39 -0.02 2.27 16 7 N -0.72 -32.65 5.26 -316.37 -1.66 -34.31 16 8 C -0.24 -12.14 9.97 84.04 0.84 -11.30 16 9 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 10 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 11 N -0.97 -56.02 13.06 21.65 0.28 -55.74 16 12 Si 0.97 43.41 29.55 68.60 2.03 45.43 16 13 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 14 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 16 C 0.08 2.56 6.39 86.86 0.55 3.11 16 17 N -0.61 -17.35 3.08 -788.05 -2.43 -19.78 16 18 C 0.53 15.32 7.62 87.66 0.67 15.99 16 19 O -0.57 -19.97 14.94 -3.05 -0.05 -20.02 16 20 C -0.10 -2.24 4.29 29.10 0.12 -2.11 16 21 C -0.08 -1.80 4.38 -19.85 -0.09 -1.89 16 22 C -0.09 -1.76 9.58 22.07 0.21 -1.55 16 23 C -0.12 -1.83 9.94 22.06 0.22 -1.61 16 24 C -0.09 -1.31 9.81 22.31 0.22 -1.09 16 25 C -0.13 -2.80 5.74 -21.31 -0.12 -2.92 16 26 C 0.15 2.88 11.05 85.32 0.94 3.83 16 27 N -0.52 -12.60 10.30 -195.52 -2.01 -14.61 16 28 C 0.06 1.52 11.07 84.09 0.93 2.45 16 29 C -0.17 -4.19 9.36 22.39 0.21 -3.98 16 30 C -0.03 -0.74 5.75 -21.29 -0.12 -0.86 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.48 6.77 -2.39 -0.02 1.47 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 2.46 7.83 -2.39 -0.02 2.44 16 35 H 0.07 2.17 7.99 -2.39 -0.02 2.15 16 36 H 0.38 18.53 7.73 -92.71 -0.72 17.81 16 37 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 2.26 7.48 -2.39 -0.02 2.24 16 40 H 0.11 2.35 6.80 -2.39 -0.02 2.34 16 41 H 0.12 2.34 7.75 -2.39 -0.02 2.32 16 42 H 0.14 2.19 8.05 -2.91 -0.02 2.16 16 43 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 44 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 45 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 47 H 0.13 3.19 6.65 -2.91 -0.02 3.17 16 Total: -1.00 -68.67 386.41 2.66 -66.02 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: 0.27 Total: 34.91 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 6.23 Total: -1.90 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -5.82 Total: -124.44 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.02 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.67 2.66 -66.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989033793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.038 kcal (2) G-P(sol) polarization free energy of solvation -68.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds