Wall clock time and date at job start Tue Mar 31 2020 22:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87413 * 2 1 4 4 C 1.54321 * 109.88514 * 121.16953 * 2 1 3 5 5 C 1.55157 * 102.94331 * 97.22220 * 4 2 1 6 6 H 1.08999 * 111.04261 * 277.42001 * 5 4 2 7 7 N 1.46507 * 111.00443 * 153.57719 * 5 4 2 8 8 C 1.36934 * 119.99667 * 161.35012 * 7 5 4 9 9 H 1.08003 * 120.00355 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99567 * 180.02562 * 8 7 5 11 11 N 1.31628 * 119.99752 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00302 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46957 * 89.99852 * 12 10 8 14 14 H 1.48500 * 109.47319 * 209.99964 * 12 10 8 15 15 H 1.48498 * 109.46901 * 330.00092 * 12 10 8 16 16 C 1.54915 * 101.57970 * 35.50676 * 5 4 2 17 17 N 1.47014 * 109.88588 * 238.98085 * 2 1 3 18 18 C 1.34780 * 125.65036 * 59.48567 * 17 2 1 19 19 O 1.21277 * 119.99574 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00296 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47425 * 180.02562 * 20 18 17 22 22 C 1.39357 * 119.46433 * 89.99687 * 21 20 18 23 23 C 1.36144 * 120.86335 * 179.97438 * 22 21 20 24 24 C 1.40429 * 119.61421 * 0.02562 * 23 22 21 25 25 C 1.40768 * 121.37293 * 180.02562 * 24 23 22 26 26 C 1.36581 * 118.14783 * 179.97438 * 25 24 23 27 27 C 1.39322 * 119.93634 * 0.03347 * 26 25 24 28 28 N 1.31086 * 121.74622 * 359.97438 * 27 26 25 29 29 C 1.33674 * 121.32686 * 0.02562 * 28 27 26 30 30 C 1.36075 * 119.46172 * 269.73056 * 21 20 18 31 31 H 1.09002 * 109.47153 * 179.56545 * 1 2 3 32 32 H 1.09001 * 109.46832 * 59.56735 * 1 2 3 33 33 H 1.09004 * 109.47261 * 299.56717 * 1 2 3 34 34 H 1.08998 * 110.73022 * 215.59048 * 4 2 1 35 35 H 1.09008 * 110.71652 * 338.86563 * 4 2 1 36 36 H 0.96997 * 119.99905 * 341.36138 * 7 5 4 37 37 H 0.97004 * 119.99614 * 179.97438 * 11 10 8 38 38 H 1.08998 * 110.36803 * 204.15086 * 16 5 4 39 39 H 1.09004 * 110.45685 * 81.87310 * 16 5 4 40 40 H 1.08995 * 109.47175 * 300.00435 * 20 18 17 41 41 H 1.09009 * 109.47091 * 59.99725 * 20 18 17 42 42 H 1.07993 * 119.56916 * 0.02562 * 22 21 20 43 43 H 1.07998 * 120.19127 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.92886 * 359.94568 * 25 24 23 45 45 H 1.08002 * 120.02747 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.12724 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.13023 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7511 1.2417 5 6 2.3519 -2.1704 0.6896 6 1 1.4456 -2.7751 0.6567 7 7 3.3937 -2.8332 1.4780 8 6 3.5388 -4.1933 1.4150 9 1 2.8855 -4.7775 0.7838 10 6 4.5256 -4.8213 2.1624 11 7 4.6654 -6.1287 2.1015 12 14 5.6552 -3.8111 3.2546 13 1 5.0561 -3.6890 4.6079 14 1 6.9758 -4.4826 3.3566 15 1 5.8317 -2.4586 2.6675 16 6 2.8569 -1.8488 -0.7392 17 7 2.0300 -0.7124 -1.1848 18 6 1.7743 -0.3820 -2.4662 19 8 1.0770 0.5780 -2.7172 20 6 2.3548 -1.2053 -3.5870 21 6 1.9215 -0.6290 -4.9103 22 6 2.7079 0.3436 -5.5247 23 6 2.3438 0.8833 -6.7205 24 6 1.1603 0.4552 -7.3434 25 6 0.7489 0.9876 -8.5799 26 6 -0.4133 0.5232 -9.1267 27 6 -1.1548 -0.4502 -8.4606 28 7 -0.7688 -0.9435 -7.3092 29 6 0.3584 -0.5325 -6.7198 30 6 0.7716 -1.0708 -5.4883 31 1 -0.3633 -1.0276 -0.0078 32 1 -0.3633 0.5206 -0.8861 33 1 -0.3634 0.5071 0.8939 34 1 2.9657 -0.2853 1.6179 35 1 1.2917 -0.7917 2.0190 36 1 3.9806 -2.3085 2.0446 37 1 5.3553 -6.5676 2.6235 38 1 2.7089 -2.7062 -1.3958 39 1 3.9094 -1.5663 -0.7167 40 1 3.4427 -1.1902 -3.5232 41 1 2.0003 -2.2329 -3.5042 42 1 3.6184 0.6731 -5.0466 43 1 2.9612 1.6367 -7.1868 44 1 1.3358 1.7426 -9.0819 45 1 -0.7575 0.9110 -10.0741 46 1 -2.0721 -0.8077 -8.9047 47 1 0.1762 -1.8286 -5.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989036774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:22 Heat of formation + Delta-G solvation = 15.967273 kcal Electronic energy + Delta-G solvation = -28361.860719 eV Core-core repulsion = 24508.785341 eV Total energy + Delta-G solvation = -3853.075378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.87054 -41.20324 -39.14121 -37.99643 -36.06745 -34.65075 -33.61960 -33.38465 -32.33275 -31.08751 -30.40568 -28.79333 -26.76831 -25.59452 -25.04516 -24.19751 -23.16815 -22.72860 -21.67754 -20.14040 -19.60941 -18.80005 -18.13305 -17.93906 -17.82862 -17.08471 -16.58098 -16.32818 -15.75635 -15.43926 -15.39395 -15.31783 -15.18813 -14.87715 -14.69726 -14.54049 -14.31742 -13.96743 -13.90946 -13.86194 -13.39956 -13.33060 -13.15612 -12.90542 -12.85027 -12.60991 -12.49739 -12.33409 -12.27011 -12.04211 -11.92998 -11.79616 -11.49857 -11.47173 -11.06485 -10.82753 -10.44786 -9.70315 -9.65282 -9.32569 -9.21609 -7.99743 -5.35573 -0.53679 -0.16595 1.03543 1.42555 1.45711 1.52674 1.59542 1.80859 2.13751 2.51458 3.11360 3.28924 3.30111 3.36620 3.59667 3.67051 3.75342 3.85420 3.90105 3.92337 4.02084 4.06565 4.09564 4.18629 4.27107 4.34577 4.42314 4.46040 4.52407 4.55173 4.60593 4.69367 4.78845 4.86222 4.90241 4.99247 5.02484 5.05545 5.12155 5.14142 5.22815 5.32649 5.38711 5.46376 5.49142 5.61927 5.79714 5.90134 6.23405 6.52328 6.97164 7.08508 7.14284 7.82399 8.01955 9.21030 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.002280 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.864450 B =12278.006548 C =12782.273064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.126 4.126 5 C 0.169 3.831 6 H 0.061 0.939 7 N -0.737 5.737 8 C -0.231 4.231 9 H 0.060 0.940 10 C -0.061 4.061 11 N -0.982 5.982 12 Si 0.953 3.047 13 H -0.281 1.281 14 H -0.301 1.301 15 H -0.246 1.246 16 C 0.084 3.916 17 N -0.610 5.610 18 C 0.531 3.469 19 O -0.571 6.571 20 C -0.100 4.100 21 C -0.045 4.045 22 C -0.114 4.114 23 C -0.092 4.092 24 C -0.124 4.124 25 C -0.057 4.057 26 C -0.176 4.176 27 C 0.121 3.879 28 N -0.517 5.517 29 C 0.102 3.898 30 C -0.108 4.108 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.370 0.630 37 H 0.257 0.743 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.145 0.855 43 H 0.164 0.836 44 H 0.173 0.827 45 H 0.175 0.825 46 H 0.184 0.816 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 18.786 -19.896 28.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.165 4.165 5 C 0.059 3.941 6 H 0.079 0.921 7 N -0.380 5.380 8 C -0.362 4.362 9 H 0.078 0.922 10 C -0.253 4.253 11 N -0.632 5.632 12 Si 0.780 3.220 13 H -0.207 1.207 14 H -0.228 1.228 15 H -0.170 1.170 16 C -0.042 4.042 17 N -0.344 5.344 18 C 0.321 3.679 19 O -0.451 6.451 20 C -0.140 4.140 21 C -0.047 4.047 22 C -0.132 4.132 23 C -0.110 4.110 24 C -0.126 4.126 25 C -0.083 4.083 26 C -0.195 4.195 27 C -0.051 4.051 28 N -0.225 5.225 29 C -0.019 4.019 30 C -0.127 4.127 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.204 0.796 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.145 0.855 41 H 0.130 0.870 42 H 0.163 0.837 43 H 0.181 0.819 44 H 0.190 0.810 45 H 0.193 0.807 46 H 0.201 0.799 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.850 18.429 -19.623 27.778 hybrid contribution 1.112 0.205 0.564 1.263 sum -5.739 18.634 -19.059 27.265 Atomic orbital electron populations 1.22080 0.94556 1.01974 1.02706 1.21551 0.94802 0.96089 0.84071 0.90502 1.22955 1.02727 0.94221 0.96577 1.21383 0.90970 0.92501 0.89256 0.92143 1.42578 1.38831 1.03556 1.53051 1.18991 1.12845 0.83086 1.21291 0.92161 1.25492 1.01267 0.96392 1.02109 1.69889 1.37208 1.09563 1.46536 0.85451 0.78018 0.79251 0.79273 1.20685 1.22801 1.17003 1.23157 0.94975 0.87694 0.98366 1.48644 1.50294 1.30522 1.04893 1.20445 0.80175 0.84675 0.82645 1.90672 1.40186 1.30468 1.83755 1.20773 1.04081 1.00172 0.88936 1.19183 0.94519 0.96297 0.94698 1.21057 1.00481 0.95825 0.95811 1.21305 0.95021 0.99550 0.95117 1.19178 0.97290 0.98608 0.97530 1.21925 0.96318 0.97678 0.92395 1.22284 0.95832 0.98414 1.02953 1.23591 0.99663 0.92347 0.89505 1.68011 1.14805 1.27753 1.11973 1.19030 0.91972 0.95428 0.95437 1.20659 0.96531 1.01101 0.94390 0.93046 0.93281 0.89693 0.89611 0.88440 0.79580 0.93396 0.90862 0.90824 0.85508 0.86972 0.83730 0.81871 0.81000 0.80743 0.79895 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 9.06 71.98 0.65 -3.27 16 2 C 0.14 3.57 3.49 45.34 0.16 3.73 16 3 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.13 -3.24 6.12 31.78 0.19 -3.04 16 5 C 0.17 5.59 3.69 46.38 0.17 5.76 16 6 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 7 N -0.74 -30.53 5.08 -316.35 -1.61 -32.14 16 8 C -0.23 -12.14 10.47 84.03 0.88 -11.26 16 9 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 10 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 11 N -0.98 -60.51 13.97 21.65 0.30 -60.21 16 12 Si 0.95 42.65 27.74 68.60 1.90 44.55 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 15 H -0.25 -9.62 6.52 99.48 0.65 -8.98 16 16 C 0.08 2.48 6.39 86.86 0.55 3.03 16 17 N -0.61 -17.05 3.08 -788.06 -2.43 -19.47 16 18 C 0.53 15.47 7.62 87.66 0.67 16.13 16 19 O -0.57 -20.11 14.93 -3.02 -0.05 -20.16 16 20 C -0.10 -2.36 4.80 29.10 0.14 -2.22 16 21 C -0.04 -1.12 4.34 -20.10 -0.09 -1.21 16 22 C -0.11 -2.40 9.59 22.05 0.21 -2.19 16 23 C -0.09 -1.70 9.78 22.32 0.22 -1.48 16 24 C -0.12 -2.69 5.74 -21.28 -0.12 -2.81 16 25 C -0.06 -0.83 9.90 22.50 0.22 -0.61 16 26 C -0.18 -2.22 10.03 22.14 0.22 -2.00 16 27 C 0.12 2.16 11.15 85.07 0.95 3.11 16 28 N -0.52 -13.76 10.34 -188.64 -1.95 -15.71 16 29 C 0.10 2.79 6.60 40.29 0.27 3.06 16 30 C -0.11 -3.06 9.58 22.34 0.21 -2.84 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.44 6.74 -2.39 -0.02 1.43 16 33 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.09 2.05 8.00 -2.39 -0.02 2.03 16 35 H 0.10 2.25 7.83 -2.38 -0.02 2.23 16 36 H 0.37 14.57 5.57 -92.71 -0.52 14.05 16 37 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.07 2.19 7.47 -2.39 -0.02 2.17 16 39 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.13 2.41 8.08 -2.39 -0.02 2.39 16 41 H 0.11 2.50 7.77 -2.38 -0.02 2.48 16 42 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 43 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 46 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 47 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -75.25 386.57 2.56 -72.70 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.40 Total: 31.49 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.98 Total: -1.04 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -5.68 Total: -127.54 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.90 Total: 44.55 kcal Total: -75.25 2.56 -72.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989036774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.662 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds