Wall clock time and date at job start Tue Mar 31 2020 22:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.99814 * 2 1 4 4 C 1.54322 * 109.87804 * 238.89665 * 2 1 3 5 5 C 1.55152 * 102.94401 * 262.77544 * 4 2 1 6 6 H 1.08994 * 111.03898 * 82.59388 * 5 4 2 7 7 N 1.46510 * 111.00570 * 206.42959 * 5 4 2 8 8 C 1.36935 * 119.99776 * 198.65555 * 7 5 4 9 9 H 1.07997 * 120.00259 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99472 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00240 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99684 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 90.00337 * 12 10 8 14 14 H 1.48503 * 109.47399 * 209.99827 * 12 10 8 15 15 H 1.48498 * 109.47295 * 330.00433 * 12 10 8 16 16 C 1.54912 * 101.58355 * 324.50124 * 5 4 2 17 17 N 1.47028 * 109.88056 * 121.09268 * 2 1 3 18 18 C 1.34776 * 125.64652 * 300.51329 * 17 2 1 19 19 O 1.21279 * 120.00383 * 359.97438 * 18 17 2 20 20 C 1.50695 * 119.99665 * 179.97438 * 18 17 2 21 21 C 1.50707 * 109.47181 * 179.97438 * 20 18 17 22 22 C 1.39355 * 119.46508 * 269.73021 * 21 20 18 23 23 C 1.36141 * 120.86898 * 179.71176 * 22 21 20 24 24 C 1.40427 * 119.60766 * 0.54743 * 23 22 21 25 25 C 1.40776 * 121.37272 * 179.70196 * 24 23 22 26 26 C 1.36575 * 118.15298 * 180.02562 * 25 24 23 27 27 C 1.39333 * 119.93262 * 0.02562 * 26 25 24 28 28 N 1.31089 * 121.74916 * 359.97438 * 27 26 25 29 29 C 1.33678 * 121.32187 * 0.02562 * 28 27 26 30 30 C 1.36076 * 119.46759 * 89.99794 * 21 20 18 31 31 H 1.09001 * 109.47225 * 300.36177 * 1 2 3 32 32 H 1.09001 * 109.47504 * 60.36052 * 1 2 3 33 33 H 1.08997 * 109.47446 * 180.36304 * 1 2 3 34 34 H 1.09004 * 110.71394 * 144.41227 * 4 2 1 35 35 H 1.08997 * 110.72161 * 21.14596 * 4 2 1 36 36 H 0.96998 * 119.99423 * 18.64703 * 7 5 4 37 37 H 0.97000 * 119.99789 * 359.97438 * 11 10 8 38 38 H 1.09001 * 110.36166 * 155.84919 * 16 5 4 39 39 H 1.08998 * 110.37041 * 278.17108 * 16 5 4 40 40 H 1.09001 * 109.47105 * 299.99443 * 20 18 17 41 41 H 1.09003 * 109.47757 * 59.99371 * 20 18 17 42 42 H 1.08003 * 119.56793 * 359.97001 * 22 21 20 43 43 H 1.07994 * 120.19752 * 180.27854 * 23 22 21 44 44 H 1.07997 * 120.91966 * 0.03390 * 25 24 23 45 45 H 1.07996 * 120.03024 * 179.97438 * 26 25 24 46 46 H 1.07995 * 119.12573 * 179.97438 * 27 26 25 47 47 H 1.08009 * 120.12254 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7497 -1.2426 5 6 2.3517 -2.1696 -0.6922 6 1 1.4455 -2.7743 -0.6602 7 7 3.3936 -2.8315 -1.4814 8 6 3.5386 -4.1917 -1.4201 9 1 2.8853 -4.7766 -0.7897 10 6 4.5255 -4.8188 -2.1683 11 7 5.3214 -4.1061 -2.9369 12 14 4.7238 -6.6744 -2.0841 13 1 3.8780 -7.3103 -3.1260 14 1 6.1466 -7.0312 -2.3160 15 1 4.3045 -7.1568 -0.7438 16 6 2.8567 -1.8498 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.7741 -0.3852 2.4657 19 8 1.0769 0.5746 2.7180 20 6 2.3545 -1.2100 3.5854 21 6 1.9211 -0.6353 4.9095 22 6 2.7105 0.3324 5.5281 23 6 2.3433 0.8750 6.7214 24 6 1.1596 0.4464 7.3436 25 6 0.7478 0.9777 8.5805 26 6 -0.4145 0.5130 9.1267 27 6 -1.1553 -0.4608 8.4601 28 7 -0.7688 -0.9534 7.3084 29 6 0.3586 -0.5418 6.7197 30 6 0.7683 -1.0736 5.4844 31 1 -0.3634 0.5194 0.8867 32 1 -0.3634 0.5082 -0.8932 33 1 -0.3634 -1.0276 0.0065 34 1 2.9656 -0.2833 -1.6182 35 1 1.2917 -0.7892 -2.0200 36 1 3.9806 -2.3061 -2.0474 37 1 5.2182 -3.1426 -2.9809 38 1 2.7087 -2.7081 1.3924 39 1 3.9090 -1.5667 0.7130 40 1 1.9999 -2.2373 3.5014 41 1 3.4425 -1.1949 3.5218 42 1 3.6234 0.6592 5.0525 43 1 2.9609 1.6275 7.1890 44 1 1.3348 1.7320 9.0834 45 1 -0.7585 0.8993 10.0747 46 1 -2.0721 -0.8193 8.9040 47 1 0.1706 -1.8278 4.9938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989036776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:30 Heat of formation + Delta-G solvation = 31.939094 kcal Electronic energy + Delta-G solvation = -28357.991171 eV Core-core repulsion = 24505.608382 eV Total energy + Delta-G solvation = -3852.382788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.06818 -40.05150 -38.03143 -36.98843 -34.52272 -33.87256 -32.57041 -31.53021 -31.24394 -30.31854 -28.25316 -27.79805 -25.53782 -24.34953 -23.82964 -23.26587 -22.35296 -21.71338 -20.31209 -18.87936 -18.03832 -17.56147 -17.20709 -17.02899 -16.94980 -15.63925 -15.51726 -14.82400 -14.69384 -14.60598 -14.49133 -14.32663 -14.00737 -13.73208 -13.41183 -13.28469 -13.24252 -13.03796 -12.96345 -12.52108 -12.31728 -11.99898 -11.88612 -11.75171 -11.61863 -11.54012 -11.05357 -11.00436 -10.75076 -10.73270 -10.58713 -10.28445 -10.08110 -9.73095 -9.69841 -9.28546 -9.07599 -8.86026 -8.44132 -8.41134 -7.21352 -6.22436 -3.25293 0.19910 0.60065 1.80578 2.65089 2.75690 3.19826 3.46359 3.50015 3.64141 3.92619 4.03728 4.34031 4.44621 4.53507 4.57878 4.63309 4.66666 4.80027 4.88093 5.04125 5.05332 5.09619 5.15944 5.21336 5.30672 5.37487 5.43319 5.52829 5.55112 5.59466 5.70322 5.75336 5.75551 5.77137 5.88975 5.94135 6.00996 6.10752 6.14550 6.17860 6.29279 6.33408 6.35503 6.42700 6.56076 6.64859 6.73324 7.68536 7.70786 7.73422 8.30848 8.63153 9.06593 9.93280 10.06445 11.25321 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.002314 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.435934 B =12097.677779 C =12919.617363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.069 0.931 4 C -0.138 4.138 5 C 0.179 3.821 6 H 0.065 0.935 7 N -0.724 5.724 8 C -0.340 4.340 9 H 0.067 0.933 10 C -0.040 4.040 11 N -0.939 5.939 12 Si 1.082 2.918 13 H -0.294 1.294 14 H -0.287 1.287 15 H -0.293 1.293 16 C 0.073 3.927 17 N -0.610 5.610 18 C 0.530 3.470 19 O -0.543 6.543 20 C -0.104 4.104 21 C -0.038 4.038 22 C -0.095 4.095 23 C -0.100 4.100 24 C -0.103 4.103 25 C -0.057 4.057 26 C -0.181 4.181 27 C 0.126 3.874 28 N -0.472 5.472 29 C 0.130 3.870 30 C -0.080 4.080 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.370 0.630 37 H 0.256 0.744 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.157 0.843 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.289 10.776 20.760 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.087 0.913 4 C -0.177 4.177 5 C 0.067 3.933 6 H 0.083 0.917 7 N -0.366 5.366 8 C -0.470 4.470 9 H 0.085 0.915 10 C -0.238 4.238 11 N -0.584 5.584 12 Si 0.912 3.088 13 H -0.222 1.222 14 H -0.213 1.213 15 H -0.220 1.220 16 C -0.053 4.053 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.420 6.420 20 C -0.144 4.144 21 C -0.041 4.041 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.105 4.105 25 C -0.083 4.083 26 C -0.201 4.201 27 C -0.047 4.047 28 N -0.180 5.180 29 C 0.009 3.991 30 C -0.098 4.098 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.204 0.796 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.175 0.825 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.341 9.180 19.981 23.517 hybrid contribution -0.167 2.090 0.887 2.277 sum -8.508 11.270 20.868 25.197 Atomic orbital electron populations 1.22132 0.94962 1.02325 1.02491 1.21463 0.94441 0.95833 0.84582 0.91262 1.22999 1.01644 0.96954 0.96089 1.21205 0.92531 0.91035 0.88542 0.91663 1.42338 1.37407 1.05077 1.51751 1.20062 1.17180 0.83269 1.26536 0.91475 1.25809 0.94748 1.06842 0.96414 1.70867 1.39938 1.07123 1.40465 0.83208 0.76260 0.73962 0.75325 1.22193 1.21322 1.22011 1.23480 0.94882 0.87129 0.99827 1.48641 1.50398 1.30867 1.04518 1.20018 0.80850 0.84990 0.82289 1.90686 1.38938 1.29042 1.83378 1.20746 1.03074 1.00510 0.90056 1.19079 0.94503 0.95866 0.94622 1.20807 0.99772 0.95668 0.95048 1.20896 0.95398 0.99800 0.95736 1.18844 0.96943 0.98557 0.96181 1.21465 0.95822 0.97525 0.93529 1.21857 0.96593 0.99675 1.01949 1.22945 0.98746 0.92538 0.90449 1.68030 1.13998 1.25921 1.10072 1.18796 0.91069 0.94238 0.94987 1.20602 0.95663 1.00263 0.93313 0.91390 0.91993 0.92439 0.90753 0.90102 0.79595 0.93261 0.91132 0.91263 0.87516 0.87564 0.85476 0.85184 0.84528 0.84664 0.82529 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.06 37.16 0.34 -1.89 16 2 C 0.14 2.05 3.50 -66.95 -0.23 1.82 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.10 6.12 -24.90 -0.15 -2.26 16 5 C 0.18 3.26 3.69 -65.78 -0.24 3.02 16 6 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 7 N -0.72 -16.63 5.27 -51.35 -0.27 -16.90 16 8 C -0.34 -8.90 9.98 -15.06 -0.15 -9.05 16 9 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 10 C -0.04 -1.10 5.50 -17.43 -0.10 -1.20 16 11 N -0.94 -27.72 13.70 55.49 0.76 -26.96 16 12 Si 1.08 24.79 29.92 -169.99 -5.09 19.71 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 16 C 0.07 1.18 6.39 -2.53 -0.02 1.16 16 17 N -0.61 -9.23 3.08 -163.02 -0.50 -9.73 16 18 C 0.53 8.03 7.62 -10.99 -0.08 7.95 16 19 O -0.54 -9.73 14.93 5.56 0.08 -9.65 16 20 C -0.10 -1.25 4.80 -29.03 -0.14 -1.39 16 21 C -0.04 -0.48 4.34 -104.98 -0.46 -0.93 16 22 C -0.09 -1.06 9.59 -39.92 -0.38 -1.44 16 23 C -0.10 -1.02 9.78 -39.51 -0.39 -1.41 16 24 C -0.10 -1.18 5.74 -106.80 -0.61 -1.79 16 25 C -0.06 -0.49 9.90 -39.22 -0.39 -0.88 16 26 C -0.18 -1.40 10.03 -39.77 -0.40 -1.80 16 27 C 0.13 1.19 11.15 -17.46 -0.19 1.00 16 28 N -0.47 -6.11 10.34 -10.98 -0.11 -6.22 16 29 C 0.13 1.74 6.60 -84.86 -0.56 1.18 16 30 C -0.08 -1.06 9.58 -39.47 -0.38 -1.44 16 31 H 0.07 1.04 6.74 -51.93 -0.35 0.69 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 35 H 0.08 1.16 7.83 -51.93 -0.41 0.76 16 36 H 0.37 8.79 6.54 -40.82 -0.27 8.53 16 37 H 0.26 7.40 6.77 -40.82 -0.28 7.12 16 38 H 0.07 1.10 7.48 -51.93 -0.39 0.71 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.11 1.17 7.77 -51.93 -0.40 0.76 16 41 H 0.11 1.10 8.07 -51.93 -0.42 0.68 16 42 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 46 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -33.27 387.99 -10.60 -43.87 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.78 Total: 9.40 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -4.54 Total: -9.37 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.13 Total: -59.81 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.09 Total: 19.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.27 -10.60 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989036776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.809 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds