Wall clock time and date at job start Tue Mar 31 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.99814 * 2 1 4 4 C 1.54322 * 109.87804 * 238.89665 * 2 1 3 5 5 C 1.55152 * 102.94401 * 262.77544 * 4 2 1 6 6 H 1.08994 * 111.03898 * 82.59388 * 5 4 2 7 7 N 1.46510 * 111.00570 * 206.42959 * 5 4 2 8 8 C 1.36935 * 119.99776 * 198.65555 * 7 5 4 9 9 H 1.07997 * 120.00259 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99472 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00240 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99684 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 90.00337 * 12 10 8 14 14 H 1.48503 * 109.47399 * 209.99827 * 12 10 8 15 15 H 1.48498 * 109.47295 * 330.00433 * 12 10 8 16 16 C 1.54912 * 101.58355 * 324.50124 * 5 4 2 17 17 N 1.47028 * 109.88056 * 121.09268 * 2 1 3 18 18 C 1.34776 * 125.64652 * 300.51329 * 17 2 1 19 19 O 1.21279 * 120.00383 * 359.97438 * 18 17 2 20 20 C 1.50695 * 119.99665 * 179.97438 * 18 17 2 21 21 C 1.50707 * 109.47181 * 179.97438 * 20 18 17 22 22 C 1.39355 * 119.46508 * 269.73021 * 21 20 18 23 23 C 1.36141 * 120.86898 * 179.71176 * 22 21 20 24 24 C 1.40427 * 119.60766 * 0.54743 * 23 22 21 25 25 C 1.40776 * 121.37272 * 179.70196 * 24 23 22 26 26 C 1.36575 * 118.15298 * 180.02562 * 25 24 23 27 27 C 1.39333 * 119.93262 * 0.02562 * 26 25 24 28 28 N 1.31089 * 121.74916 * 359.97438 * 27 26 25 29 29 C 1.33678 * 121.32187 * 0.02562 * 28 27 26 30 30 C 1.36076 * 119.46759 * 89.99794 * 21 20 18 31 31 H 1.09001 * 109.47225 * 300.36177 * 1 2 3 32 32 H 1.09001 * 109.47504 * 60.36052 * 1 2 3 33 33 H 1.08997 * 109.47446 * 180.36304 * 1 2 3 34 34 H 1.09004 * 110.71394 * 144.41227 * 4 2 1 35 35 H 1.08997 * 110.72161 * 21.14596 * 4 2 1 36 36 H 0.96998 * 119.99423 * 18.64703 * 7 5 4 37 37 H 0.97000 * 119.99789 * 359.97438 * 11 10 8 38 38 H 1.09001 * 110.36166 * 155.84919 * 16 5 4 39 39 H 1.08998 * 110.37041 * 278.17108 * 16 5 4 40 40 H 1.09001 * 109.47105 * 299.99443 * 20 18 17 41 41 H 1.09003 * 109.47757 * 59.99371 * 20 18 17 42 42 H 1.08003 * 119.56793 * 359.97001 * 22 21 20 43 43 H 1.07994 * 120.19752 * 180.27854 * 23 22 21 44 44 H 1.07997 * 120.91966 * 0.03390 * 25 24 23 45 45 H 1.07996 * 120.03024 * 179.97438 * 26 25 24 46 46 H 1.07995 * 119.12573 * 179.97438 * 27 26 25 47 47 H 1.08009 * 120.12254 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7497 -1.2426 5 6 2.3517 -2.1696 -0.6922 6 1 1.4455 -2.7743 -0.6602 7 7 3.3936 -2.8315 -1.4814 8 6 3.5386 -4.1917 -1.4201 9 1 2.8853 -4.7766 -0.7897 10 6 4.5255 -4.8188 -2.1683 11 7 5.3214 -4.1061 -2.9369 12 14 4.7238 -6.6744 -2.0841 13 1 3.8780 -7.3103 -3.1260 14 1 6.1466 -7.0312 -2.3160 15 1 4.3045 -7.1568 -0.7438 16 6 2.8567 -1.8498 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.7741 -0.3852 2.4657 19 8 1.0769 0.5746 2.7180 20 6 2.3545 -1.2100 3.5854 21 6 1.9211 -0.6353 4.9095 22 6 2.7105 0.3324 5.5281 23 6 2.3433 0.8750 6.7214 24 6 1.1596 0.4464 7.3436 25 6 0.7478 0.9777 8.5805 26 6 -0.4145 0.5130 9.1267 27 6 -1.1553 -0.4608 8.4601 28 7 -0.7688 -0.9534 7.3084 29 6 0.3586 -0.5418 6.7197 30 6 0.7683 -1.0736 5.4844 31 1 -0.3634 0.5194 0.8867 32 1 -0.3634 0.5082 -0.8932 33 1 -0.3634 -1.0276 0.0065 34 1 2.9656 -0.2833 -1.6182 35 1 1.2917 -0.7892 -2.0200 36 1 3.9806 -2.3061 -2.0474 37 1 5.2182 -3.1426 -2.9809 38 1 2.7087 -2.7081 1.3924 39 1 3.9090 -1.5667 0.7130 40 1 1.9999 -2.2373 3.5014 41 1 3.4425 -1.1949 3.5218 42 1 3.6234 0.6592 5.0525 43 1 2.9609 1.6275 7.1890 44 1 1.3348 1.7320 9.0834 45 1 -0.7585 0.8993 10.0747 46 1 -2.0721 -0.8193 8.9040 47 1 0.1706 -1.8278 4.9938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989036776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:29 Heat of formation + Delta-G solvation = 12.578277 kcal Electronic energy + Delta-G solvation = -28358.830719 eV Core-core repulsion = 24505.608382 eV Total energy + Delta-G solvation = -3853.222336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.89292 -41.24556 -39.17752 -38.02392 -36.30261 -34.66976 -33.61979 -33.15374 -32.36296 -31.10503 -29.80568 -28.79850 -26.80873 -25.70902 -25.08226 -24.28963 -23.22753 -22.87236 -21.68027 -20.09328 -19.48164 -18.82365 -18.22063 -17.95658 -17.84218 -16.97532 -16.83438 -16.15462 -15.95390 -15.53953 -15.45373 -15.34571 -15.29404 -14.94386 -14.73141 -14.58783 -14.30527 -13.92660 -13.89802 -13.87720 -13.44183 -13.20474 -12.98018 -12.76080 -12.68910 -12.60634 -12.50264 -12.32890 -12.24280 -12.07765 -11.84458 -11.68707 -11.51277 -11.20505 -11.06623 -10.84080 -10.46269 -9.74096 -9.67215 -9.23464 -9.15065 -8.36336 -5.33222 -0.55292 -0.18336 1.01955 1.54905 1.62504 1.71352 1.77201 1.85450 2.10174 2.72541 3.09820 3.27024 3.36575 3.39183 3.57749 3.65470 3.75226 3.85045 3.87405 3.88720 3.99974 4.02418 4.06873 4.16558 4.24421 4.27336 4.37551 4.40403 4.49918 4.51277 4.59037 4.63666 4.71199 4.82966 4.83917 4.93692 4.99621 5.04009 5.05637 5.12555 5.17342 5.25464 5.36942 5.39897 5.47015 5.60168 5.63828 5.88341 6.47738 6.52622 6.95614 7.06621 7.10449 7.98059 8.08649 9.15213 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.002314 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.435934 B =12097.677779 C =12919.617363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.139 3.861 3 H 0.074 0.926 4 C -0.125 4.125 5 C 0.171 3.829 6 H 0.059 0.941 7 N -0.735 5.735 8 C -0.330 4.330 9 H 0.070 0.930 10 C -0.099 4.099 11 N -0.975 5.975 12 Si 1.125 2.875 13 H -0.288 1.288 14 H -0.296 1.296 15 H -0.271 1.271 16 C 0.088 3.912 17 N -0.609 5.609 18 C 0.530 3.470 19 O -0.571 6.571 20 C -0.099 4.099 21 C -0.045 4.045 22 C -0.115 4.115 23 C -0.091 4.091 24 C -0.124 4.124 25 C -0.058 4.058 26 C -0.175 4.175 27 C 0.122 3.878 28 N -0.516 5.516 29 C 0.102 3.898 30 C -0.106 4.106 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.364 0.636 37 H 0.247 0.753 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.172 0.828 45 H 0.175 0.825 46 H 0.185 0.815 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 11.714 23.155 27.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.164 4.164 5 C 0.061 3.939 6 H 0.076 0.924 7 N -0.377 5.377 8 C -0.461 4.461 9 H 0.088 0.912 10 C -0.291 4.291 11 N -0.623 5.623 12 Si 0.951 3.049 13 H -0.215 1.215 14 H -0.222 1.222 15 H -0.196 1.196 16 C -0.038 4.038 17 N -0.343 5.343 18 C 0.320 3.680 19 O -0.451 6.451 20 C -0.138 4.138 21 C -0.048 4.048 22 C -0.133 4.133 23 C -0.110 4.110 24 C -0.126 4.126 25 C -0.083 4.083 26 C -0.194 4.194 27 C -0.051 4.051 28 N -0.225 5.225 29 C -0.018 4.018 30 C -0.125 4.125 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.197 0.803 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.181 0.819 44 H 0.190 0.810 45 H 0.193 0.807 46 H 0.202 0.798 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.784 10.139 22.410 26.118 hybrid contribution -0.192 1.899 0.284 1.929 sum -8.976 12.037 22.693 27.211 Atomic orbital electron populations 1.22058 0.94225 1.02054 1.02758 1.21518 0.94982 0.95860 0.84052 0.90841 1.22903 1.02094 0.94811 0.96582 1.21347 0.91014 0.92235 0.89349 0.92351 1.42446 1.38377 1.04305 1.52526 1.20361 1.16004 0.84791 1.24947 0.91204 1.27061 0.95139 1.10227 0.96689 1.70967 1.41762 1.06775 1.42764 0.82639 0.75716 0.70047 0.76505 1.21501 1.22248 1.19643 1.23126 0.94508 0.87730 0.98454 1.48652 1.50250 1.30509 1.04901 1.20499 0.80178 0.84735 0.82576 1.90672 1.40220 1.30470 1.83695 1.20766 1.03958 1.00224 0.88880 1.19167 0.94555 0.96401 0.94648 1.21052 1.00469 0.95903 0.95872 1.21299 0.95040 0.99496 0.95131 1.19178 0.97293 0.98561 0.97551 1.21924 0.96336 0.97684 0.92395 1.22288 0.95790 0.98388 1.02958 1.23603 0.99653 0.92315 0.89483 1.68016 1.14699 1.27758 1.11984 1.19022 0.91999 0.95427 0.95401 1.20653 0.96428 1.01127 0.94306 0.93014 0.89824 0.92901 0.90635 0.88975 0.80298 0.94291 0.90485 0.91797 0.86728 0.85698 0.83909 0.81912 0.81036 0.80717 0.79823 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.06 71.98 0.65 -3.45 16 2 C 0.14 3.94 3.50 45.34 0.16 4.10 16 3 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.13 -3.70 6.12 31.78 0.19 -3.50 16 5 C 0.17 6.14 3.69 46.38 0.17 6.31 16 6 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 7 N -0.74 -33.78 5.27 -316.37 -1.67 -35.45 16 8 C -0.33 -17.19 9.98 84.03 0.84 -16.35 16 9 H 0.07 3.55 7.83 -2.91 -0.02 3.52 16 10 C -0.10 -5.47 5.50 84.86 0.47 -5.01 16 11 N -0.98 -58.36 13.70 21.65 0.30 -58.06 16 12 Si 1.13 49.81 29.92 68.60 2.05 51.86 16 13 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 14 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 15 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 16 C 0.09 2.77 6.39 86.86 0.55 3.33 16 17 N -0.61 -18.07 3.08 -788.07 -2.43 -20.50 16 18 C 0.53 15.97 7.62 87.66 0.67 16.63 16 19 O -0.57 -20.63 14.93 -3.02 -0.05 -20.68 16 20 C -0.10 -2.36 4.80 29.10 0.14 -2.22 16 21 C -0.05 -1.15 4.34 -20.10 -0.09 -1.24 16 22 C -0.12 -2.48 9.59 22.05 0.21 -2.27 16 23 C -0.09 -1.72 9.78 22.31 0.22 -1.50 16 24 C -0.12 -2.68 5.74 -21.28 -0.12 -2.80 16 25 C -0.06 -0.83 9.90 22.50 0.22 -0.60 16 26 C -0.17 -2.17 10.03 22.14 0.22 -1.95 16 27 C 0.12 2.12 11.15 85.07 0.95 3.07 16 28 N -0.52 -13.52 10.34 -188.64 -1.95 -15.47 16 29 C 0.10 2.77 6.60 40.29 0.27 3.04 16 30 C -0.11 -2.98 9.58 22.34 0.21 -2.77 16 31 H 0.05 1.57 6.74 -2.39 -0.02 1.56 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 2.24 8.00 -2.38 -0.02 2.22 16 35 H 0.09 2.51 7.83 -2.39 -0.02 2.50 16 36 H 0.36 17.53 6.54 -92.71 -0.61 16.93 16 37 H 0.25 14.59 6.77 -92.71 -0.63 13.96 16 38 H 0.08 2.34 7.48 -2.39 -0.02 2.32 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.11 2.52 7.77 -2.39 -0.02 2.50 16 41 H 0.13 2.47 8.07 -2.39 -0.02 2.45 16 42 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 43 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 46 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 47 H 0.12 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -73.72 387.99 2.71 -71.01 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.52 Total: 34.46 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 5.94 Total: -7.17 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -5.75 Total: -129.48 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.05 Total: 51.86 kcal Total: -73.72 2.71 -71.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989036776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.590 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds