Wall clock time and date at job start Tue Mar 31 2020 22:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.87832 * 2 1 4 4 C 1.54330 * 109.87950 * 121.16836 * 2 1 3 5 5 C 1.55155 * 102.94139 * 141.61034 * 4 2 1 6 6 H 1.08993 * 111.00802 * 82.57413 * 5 4 2 7 7 N 1.46502 * 111.00455 * 206.39013 * 5 4 2 8 8 C 1.36935 * 120.00117 * 205.00261 * 7 5 4 9 9 H 1.08005 * 119.99795 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00228 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00259 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99732 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47215 * 90.00009 * 12 10 8 14 14 H 1.48508 * 109.46720 * 209.99877 * 12 10 8 15 15 H 1.48495 * 109.47278 * 329.99642 * 12 10 8 16 16 C 1.55138 * 101.48664 * 324.33291 * 5 4 2 17 17 N 1.47018 * 109.88474 * 238.97400 * 2 1 3 18 18 C 1.34778 * 125.64565 * 61.61094 * 17 2 1 19 19 O 1.21284 * 120.00264 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00113 * 179.97438 * 18 17 2 21 21 C 1.50698 * 109.46933 * 179.97438 * 20 18 17 22 22 C 1.39352 * 119.46934 * 269.97645 * 21 20 18 23 23 C 1.36144 * 120.87170 * 180.02562 * 22 21 20 24 24 C 1.40419 * 119.61156 * 0.04368 * 23 22 21 25 25 C 1.40776 * 121.37530 * 179.97438 * 24 23 22 26 26 C 1.36580 * 118.14777 * 179.97438 * 25 24 23 27 27 C 1.39331 * 119.93751 * 359.95468 * 26 25 24 28 28 N 1.31092 * 121.74877 * 0.06844 * 27 26 25 29 29 C 1.33684 * 121.31639 * 359.95018 * 28 27 26 30 30 C 1.36084 * 119.46752 * 90.00361 * 21 20 18 31 31 H 1.08994 * 109.47449 * 179.56584 * 1 2 3 32 32 H 1.09000 * 109.47467 * 299.57573 * 1 2 3 33 33 H 1.09006 * 109.46659 * 59.56815 * 1 2 3 34 34 H 1.08994 * 110.71903 * 259.97466 * 4 2 1 35 35 H 1.09005 * 110.71599 * 23.07073 * 4 2 1 36 36 H 0.97000 * 120.00019 * 24.99640 * 7 5 4 37 37 H 0.97000 * 120.00229 * 180.02562 * 11 10 8 38 38 H 1.09003 * 110.49370 * 278.45622 * 16 5 4 39 39 H 1.08996 * 110.34367 * 156.05997 * 16 5 4 40 40 H 1.09001 * 109.46806 * 59.99852 * 20 18 17 41 41 H 1.08996 * 109.46720 * 299.99805 * 20 18 17 42 42 H 1.07998 * 119.56643 * 0.02562 * 22 21 20 43 43 H 1.07999 * 120.19013 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.92856 * 359.95440 * 25 24 23 45 45 H 1.07999 * 120.02829 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.12714 * 180.02562 * 27 26 25 47 47 H 1.08003 * 120.12049 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7511 1.2418 5 6 3.2875 -1.5152 0.6906 6 1 4.1653 -0.8699 0.6594 7 7 3.5535 -2.7211 1.4788 8 6 4.8169 -3.2478 1.5193 9 1 5.6171 -2.7744 0.9697 10 6 5.0690 -4.3901 2.2665 11 7 6.2832 -4.8967 2.3050 12 14 3.6847 -5.2093 3.2163 13 1 3.0230 -6.2206 2.3534 14 1 4.2385 -5.8744 4.4231 15 1 2.6923 -4.1841 3.6277 16 6 2.8099 -1.8816 -0.7392 17 7 2.0300 -0.7126 -1.1847 18 6 1.8075 -0.3589 -2.4661 19 8 1.1438 0.6246 -2.7172 20 6 2.3844 -1.1849 -3.5869 21 6 1.9912 -0.5804 -4.9101 22 6 0.8094 -0.9879 -5.5259 23 6 0.4270 -0.4611 -6.7216 24 6 1.2338 0.5052 -7.3439 25 6 0.8745 1.0740 -8.5804 26 6 1.7076 2.0086 -9.1262 27 6 2.8750 2.3737 -8.4589 28 7 3.2067 1.8416 -7.3077 29 6 2.4356 0.9213 -6.7196 30 6 2.7962 0.3543 -5.4847 31 1 -0.3634 -1.0276 -0.0078 32 1 -0.3634 0.5072 0.8937 33 1 -0.3633 0.5206 -0.8862 34 1 2.3528 -0.0486 2.0200 35 1 1.3038 -1.4458 1.6182 36 1 2.8347 -3.1464 1.9721 37 1 6.4594 -5.6951 2.8269 38 1 2.1800 -2.7709 -0.7149 39 1 3.6655 -2.0395 -1.3957 40 1 1.9989 -2.2025 -3.5238 41 1 3.4710 -1.2021 -3.5034 42 1 0.1886 -1.7315 -5.0483 43 1 -0.4909 -0.7852 -7.1893 44 1 -0.0345 0.7795 -9.0837 45 1 1.4616 2.4643 -10.0739 46 1 3.5241 3.1143 -8.9021 47 1 3.7088 0.6590 -4.9940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989036777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:34 Heat of formation + Delta-G solvation = 35.482173 kcal Electronic energy + Delta-G solvation = -28316.649533 eV Core-core repulsion = 24464.420384 eV Total energy + Delta-G solvation = -3852.229149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.05843 -40.04535 -38.02452 -36.98502 -34.38371 -33.86202 -32.55848 -31.63345 -31.33476 -30.30841 -28.98077 -27.87313 -25.56526 -24.33975 -23.81087 -23.17239 -22.31974 -21.41930 -20.48306 -18.82463 -18.02909 -17.80380 -17.20018 -17.06907 -16.85401 -16.11865 -15.22019 -14.86334 -14.68294 -14.56280 -14.43668 -14.34827 -13.98687 -13.69155 -13.42593 -13.27481 -13.15367 -13.02702 -12.67595 -12.58908 -12.35333 -12.06835 -11.94935 -11.75869 -11.61639 -11.57200 -11.41213 -11.20310 -10.88069 -10.74700 -10.71840 -10.42875 -10.13521 -9.74107 -9.70345 -9.68811 -9.10460 -8.85230 -8.44855 -8.40671 -7.45249 -5.89309 -3.27811 0.20881 0.61037 1.81550 2.65869 2.75475 3.18592 3.28982 3.31427 3.38143 3.93549 4.04934 4.34859 4.45595 4.47482 4.58721 4.59914 4.64140 4.80641 4.89109 4.96703 5.06788 5.07161 5.12244 5.21482 5.31151 5.33822 5.43352 5.46955 5.51702 5.60582 5.63942 5.69032 5.71315 5.76461 5.88571 5.90035 5.96008 6.02972 6.15242 6.20512 6.29823 6.30896 6.34004 6.37162 6.55677 6.65798 6.66869 7.71296 7.72050 7.84623 8.28739 8.30745 9.05474 9.77576 9.95435 11.28168 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.002277 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.776578 B =12296.460667 C =12904.399538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.141 4.141 5 C 0.178 3.822 6 H 0.077 0.923 7 N -0.736 5.736 8 C -0.255 4.255 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.071 3.929 17 N -0.611 5.611 18 C 0.531 3.469 19 O -0.542 6.542 20 C -0.104 4.104 21 C -0.039 4.039 22 C -0.095 4.095 23 C -0.100 4.100 24 C -0.103 4.103 25 C -0.058 4.058 26 C -0.181 4.181 27 C 0.126 3.874 28 N -0.472 5.472 29 C 0.130 3.870 30 C -0.079 4.079 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.158 0.842 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 10.736 -19.269 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.091 0.909 4 C -0.180 4.180 5 C 0.066 3.934 6 H 0.095 0.905 7 N -0.377 5.377 8 C -0.384 4.384 9 H 0.111 0.889 10 C -0.187 4.187 11 N -0.574 5.574 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.054 4.054 17 N -0.345 5.345 18 C 0.319 3.681 19 O -0.420 6.420 20 C -0.144 4.144 21 C -0.041 4.041 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.105 4.105 25 C -0.084 4.084 26 C -0.201 4.201 27 C -0.047 4.047 28 N -0.180 5.180 29 C 0.009 3.991 30 C -0.098 4.098 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.175 0.825 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.341 11.391 -18.950 25.321 hybrid contribution -1.676 -1.057 0.280 2.001 sum -14.017 10.335 -18.670 25.531 Atomic orbital electron populations 1.22128 0.95208 1.02038 1.02480 1.21488 0.94183 0.96232 0.84554 0.90868 1.23083 0.99003 0.99797 0.96126 1.21297 0.95092 0.88715 0.88283 0.90463 1.42667 1.09197 1.29239 1.56560 1.19073 0.85850 1.07389 1.26099 0.88948 1.24690 0.96124 0.98005 0.99852 1.69695 1.18990 1.23926 1.44833 0.86577 0.82258 0.79661 0.80158 1.20956 1.21610 1.20227 1.23487 0.94745 0.87408 0.99801 1.48621 1.52424 1.28897 1.04544 1.20029 0.80569 0.85218 0.82284 1.90692 1.40257 1.27653 1.83395 1.20751 1.03492 1.00163 0.90007 1.19079 0.94378 0.96000 0.94682 1.20797 0.95703 0.99736 0.95034 1.20890 0.99126 0.96157 0.95715 1.18839 0.96467 0.99028 0.96182 1.21463 0.98917 0.94451 0.93544 1.21858 0.96520 0.99751 1.01935 1.22948 0.94514 0.96764 0.90455 1.68039 1.31462 1.08384 1.10089 1.18803 0.91059 0.94243 0.95001 1.20617 1.00457 0.95399 0.93293 0.92686 0.91962 0.91527 0.90091 0.90680 0.80232 0.92854 0.91329 0.90651 0.87565 0.87371 0.85518 0.85224 0.84548 0.84677 0.82525 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.10 37.16 0.34 -1.70 16 2 C 0.14 1.91 3.46 -66.95 -0.23 1.68 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 4 C -0.14 -2.00 6.12 -24.89 -0.15 -2.15 16 5 C 0.18 3.04 3.73 -65.66 -0.24 2.79 16 6 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 7 N -0.74 -15.69 5.05 -51.23 -0.26 -15.95 16 8 C -0.25 -6.63 10.44 -15.06 -0.16 -6.79 16 9 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 10 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 11 N -0.93 -27.80 13.97 55.49 0.78 -27.03 16 12 Si 0.88 20.82 27.74 -169.99 -4.71 16.10 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16 16 C 0.07 1.07 6.40 -2.41 -0.02 1.06 16 17 N -0.61 -8.74 3.06 -162.88 -0.50 -9.24 16 18 C 0.53 7.72 7.64 -10.98 -0.08 7.64 16 19 O -0.54 -9.46 15.07 5.55 0.08 -9.38 16 20 C -0.10 -1.21 4.80 -29.03 -0.14 -1.35 16 21 C -0.04 -0.48 4.34 -104.98 -0.46 -0.93 16 22 C -0.09 -1.03 9.59 -39.92 -0.38 -1.41 16 23 C -0.10 -1.01 9.78 -39.51 -0.39 -1.39 16 24 C -0.10 -1.16 5.74 -106.80 -0.61 -1.78 16 25 C -0.06 -0.49 9.90 -39.22 -0.39 -0.88 16 26 C -0.18 -1.40 10.03 -39.77 -0.40 -1.79 16 27 C 0.13 1.19 11.15 -17.46 -0.19 1.00 16 28 N -0.47 -6.09 10.34 -10.98 -0.11 -6.20 16 29 C 0.13 1.72 6.60 -84.86 -0.56 1.16 16 30 C -0.08 -1.04 9.58 -39.47 -0.38 -1.42 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.95 6.88 -51.93 -0.36 0.59 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.05 7.72 -51.93 -0.40 0.65 16 36 H 0.36 7.66 5.63 -40.82 -0.23 7.43 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.10 7.48 -51.93 -0.39 0.72 16 40 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 41 H 0.11 1.14 7.78 -51.93 -0.40 0.74 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 386.91 15.07 5.83 5.83 Total: -1.00 -33.21 386.91 -10.30 -43.51 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.86 Total: 8.44 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -4.54 Total: -6.09 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.10 Total: -58.41 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.10 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.21 -10.30 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989036777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.993 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds