Wall clock time and date at job start Tue Mar 31 2020 22:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.00116 * 2 1 4 4 C 1.54339 * 109.98903 * 238.96438 * 2 1 3 5 5 C 1.55159 * 103.01872 * 218.66660 * 4 2 1 6 6 H 1.08999 * 111.00383 * 153.38633 * 5 4 2 7 7 N 1.46498 * 111.00293 * 277.23175 * 5 4 2 8 8 C 1.36936 * 120.00438 * 198.65078 * 7 5 4 9 9 H 1.08000 * 119.99611 * 0.02562 * 8 7 5 10 10 C 1.38805 * 120.00512 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99974 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 120.00253 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46764 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47148 * 119.99892 * 12 10 8 15 15 H 1.48496 * 109.47097 * 240.00265 * 12 10 8 16 16 C 1.54908 * 101.58294 * 35.30772 * 5 4 2 17 17 N 1.47022 * 109.88313 * 121.10081 * 2 1 3 18 18 C 1.34778 * 125.64713 * 298.39217 * 17 2 1 19 19 O 1.21587 * 119.99657 * 3.35886 * 18 17 2 20 20 C 1.47639 * 120.00297 * 183.36046 * 18 17 2 21 21 C 1.39724 * 120.07568 * 332.62079 * 20 18 17 22 22 C 1.37714 * 119.91682 * 179.97438 * 21 20 18 23 23 C 1.39050 * 120.08047 * 359.97437 * 22 21 20 24 24 N 1.39804 * 119.92090 * 179.97438 * 23 22 21 25 25 C 1.36636 * 125.67520 * 359.69705 * 24 23 22 26 26 C 1.34821 * 108.19487 * 179.82734 * 25 24 23 27 27 C 1.40989 * 107.48014 * 0.42466 * 26 25 24 28 28 C 1.34816 * 107.48149 * 359.73684 * 27 26 25 29 29 C 1.39065 * 120.16113 * 0.27770 * 23 22 21 30 30 C 1.37708 * 120.07435 * 359.48826 * 29 23 22 31 31 H 1.09001 * 109.47148 * 300.35602 * 1 2 3 32 32 H 1.08995 * 109.47339 * 60.35436 * 1 2 3 33 33 H 1.09005 * 109.47260 * 180.35792 * 1 2 3 34 34 H 1.08997 * 110.84912 * 100.20067 * 4 2 1 35 35 H 1.09003 * 110.66810 * 337.04418 * 4 2 1 36 36 H 0.97005 * 120.00437 * 18.65004 * 7 5 4 37 37 H 0.96999 * 120.00068 * 180.02562 * 11 10 8 38 38 H 1.08999 * 110.36700 * 204.15385 * 16 5 4 39 39 H 1.08997 * 110.46054 * 81.87685 * 16 5 4 40 40 H 1.07993 * 120.03931 * 359.97438 * 21 20 18 41 41 H 1.07997 * 119.95503 * 179.97438 * 22 21 20 42 42 H 1.07995 * 125.90719 * 359.95795 * 25 24 23 43 43 H 1.07993 * 126.25891 * 180.18971 * 26 25 24 44 44 H 1.07997 * 126.25724 * 179.77230 * 27 26 25 45 45 H 1.08001 * 125.89810 * 179.97438 * 28 27 26 46 46 H 1.07993 * 119.95961 * 179.74295 * 29 23 22 47 47 H 1.07998 * 120.03916 * 180.25139 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2863 -1.5184 -0.6916 6 1 3.4806 -2.4155 -1.2793 7 7 4.4698 -0.6562 -0.6465 8 6 5.7188 -1.2115 -0.5634 9 1 5.8313 -2.2852 -0.5315 10 6 6.8402 -0.3946 -0.5201 11 7 6.7030 0.9138 -0.5584 12 14 8.5439 -1.1523 -0.4061 13 1 8.4265 -2.6323 -0.3776 14 1 9.3477 -0.7426 -1.5856 15 1 9.2117 -0.6842 0.8349 16 6 2.8099 -1.8826 0.7367 17 7 2.0300 -0.7142 1.1838 18 6 1.8074 -0.3622 2.4657 19 8 1.0915 0.5871 2.7198 20 6 2.4328 -1.1293 3.5612 21 6 2.7552 -2.4764 3.3775 22 6 3.3390 -3.1887 4.4014 23 6 3.6081 -2.5687 5.6166 24 7 4.2004 -3.2952 6.6540 25 6 4.5553 -4.6136 6.6020 26 6 5.0972 -4.9508 7.7895 27 6 5.0684 -3.8040 8.6091 28 6 4.5153 -2.8064 7.8905 29 6 3.2839 -1.2296 5.8047 30 6 2.7044 -0.5098 4.7837 31 1 -0.3633 0.5194 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 -0.3634 -1.0277 0.0064 34 1 2.3597 -0.0450 -2.0192 35 1 1.3066 -1.4405 -1.6226 36 1 4.3689 0.3081 -0.6755 37 1 7.4867 1.4847 -0.5286 38 1 3.6655 -2.0413 1.3931 39 1 2.1805 -2.7723 0.7132 40 1 2.5467 -2.9584 2.4339 41 1 3.5880 -4.2300 4.2603 42 1 4.4262 -5.2714 5.7552 43 1 5.4796 -5.9227 8.0642 44 1 5.4248 -3.7368 9.6264 45 1 4.3494 -1.7957 8.2331 46 1 3.4907 -0.7525 6.7512 47 1 2.4566 0.5312 4.9291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989122469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:26 Heat of formation + Delta-G solvation = 75.550874 kcal Electronic energy + Delta-G solvation = -29192.208033 eV Core-core repulsion = 25341.716394 eV Total energy + Delta-G solvation = -3850.491640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77512 -40.29523 -38.54760 -37.22441 -34.04689 -33.51484 -31.96205 -31.38638 -31.07917 -29.00853 -28.89458 -28.48103 -25.76183 -24.27045 -23.70904 -23.10838 -21.97966 -20.35230 -20.28430 -19.92757 -19.18489 -18.50823 -17.39364 -16.98352 -16.26256 -15.48566 -15.12715 -15.03987 -14.87687 -14.64266 -14.12236 -14.01637 -13.89725 -13.67961 -13.60657 -13.28027 -13.23244 -12.80665 -12.57006 -12.47401 -12.43159 -12.25688 -12.14272 -11.92478 -11.69393 -11.27403 -11.20869 -10.97140 -10.74471 -10.65000 -10.36359 -10.04523 -9.93464 -9.78523 -9.63391 -9.21272 -9.06289 -8.42780 -8.34334 -8.08378 -7.09028 -5.87633 -3.18300 0.55079 1.19328 2.16661 2.67048 2.83189 3.02407 3.25804 3.36432 3.41801 3.44666 3.81904 4.46928 4.48818 4.56787 4.62096 4.84131 4.94005 4.99927 5.06483 5.11202 5.15771 5.26361 5.31220 5.40996 5.44038 5.53250 5.56662 5.62045 5.72919 5.78167 5.82013 5.86531 5.90058 6.00329 6.07448 6.11081 6.14531 6.17101 6.24768 6.35188 6.39136 6.50663 6.55229 6.63622 6.73355 6.76305 7.02368 7.26526 7.59281 7.84415 8.29431 8.42350 9.41649 9.96227 10.30493 11.34293 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008273 B = 0.003973 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.817273 B = 7046.237074 C = 9430.465355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.168 3.832 6 H 0.072 0.928 7 N -0.711 5.711 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.927 5.927 12 Si 0.905 3.095 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.058 3.942 17 N -0.590 5.590 18 C 0.574 3.426 19 O -0.549 6.549 20 C -0.131 4.131 21 C -0.064 4.064 22 C -0.147 4.147 23 C 0.157 3.843 24 N -0.396 5.396 25 C -0.013 4.013 26 C -0.192 4.192 27 C -0.192 4.192 28 C -0.014 4.014 29 C -0.150 4.150 30 C -0.033 4.033 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.166 0.834 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.165 0.835 46 H 0.134 0.866 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.824 -9.418 10.559 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.176 4.176 5 C 0.056 3.944 6 H 0.090 0.910 7 N -0.351 5.351 8 C -0.379 4.379 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.574 5.574 12 Si 0.736 3.264 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.218 1.218 16 C -0.068 4.068 17 N -0.321 5.321 18 C 0.364 3.636 19 O -0.428 6.428 20 C -0.134 4.134 21 C -0.083 4.083 22 C -0.167 4.167 23 C 0.064 3.936 24 N -0.068 5.068 25 C -0.139 4.139 26 C -0.216 4.216 27 C -0.216 4.216 28 C -0.140 4.140 29 C -0.169 4.169 30 C -0.053 4.053 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.168 0.832 41 H 0.152 0.848 42 H 0.183 0.817 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.182 0.818 46 H 0.152 0.848 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.149 -8.836 10.532 17.088 hybrid contribution 1.182 -0.077 0.194 1.200 sum -8.966 -8.913 10.726 16.579 Atomic orbital electron populations 1.22144 0.95255 1.01800 1.02615 1.21507 0.93635 0.96773 0.84485 0.90669 1.23050 0.98134 1.00053 0.96410 1.21352 0.87067 0.94534 0.91479 0.91043 1.42336 1.00193 1.05252 1.87316 1.19236 0.83338 0.91795 1.43573 0.90929 1.24751 0.97925 0.95306 1.02329 1.69669 1.28906 1.02121 1.56674 0.86166 0.84743 0.78230 0.77307 1.20439 1.21731 1.21833 1.23763 0.94674 0.86796 1.01547 1.48267 1.51164 1.28331 1.04357 1.17740 0.80805 0.83625 0.81456 1.90735 1.39089 1.29531 1.83478 1.19940 1.03726 0.94667 0.95110 1.21772 0.94248 0.93317 0.98933 1.20729 1.03400 1.00849 0.91717 1.18052 0.96094 0.91653 0.87837 1.41651 1.45530 1.09270 1.10301 1.21959 1.06382 0.84535 1.01032 1.21001 1.06972 0.99621 0.94035 1.20998 1.06900 0.93280 1.00433 1.21944 1.06853 1.00437 0.84810 1.20706 1.03456 0.92072 1.00684 1.21035 0.93528 1.00245 0.90455 0.91385 0.91960 0.92871 0.89678 0.90642 0.77984 0.93393 0.89330 0.92373 0.83230 0.84770 0.81690 0.84189 0.84214 0.81763 0.84793 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.11 37.16 0.34 -1.83 16 2 C 0.14 2.19 3.47 -66.95 -0.23 1.96 16 3 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.14 -2.01 6.05 -24.89 -0.15 -2.16 16 5 C 0.17 2.93 3.69 -65.78 -0.24 2.68 16 6 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 7 N -0.71 -16.43 5.27 -51.35 -0.27 -16.70 16 8 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 11 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 12 Si 0.90 21.71 29.55 -169.99 -5.02 16.69 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 C 0.06 0.91 4.71 -2.53 -0.01 0.90 16 17 N -0.59 -9.86 3.06 -164.19 -0.50 -10.37 16 18 C 0.57 10.23 7.45 -12.42 -0.09 10.13 16 19 O -0.55 -10.98 15.57 5.29 0.08 -10.90 16 20 C -0.13 -2.04 5.70 -104.95 -0.60 -2.64 16 21 C -0.06 -0.86 7.92 -39.22 -0.31 -1.17 16 22 C -0.15 -1.82 9.43 -39.47 -0.37 -2.20 16 23 C 0.16 2.02 6.62 -83.61 -0.55 1.47 16 24 N -0.40 -4.85 2.97 -60.89 -0.18 -5.03 16 25 C -0.01 -0.14 10.73 -16.62 -0.18 -0.32 16 26 C -0.19 -2.04 10.86 -39.75 -0.43 -2.47 16 27 C -0.19 -2.03 10.86 -39.75 -0.43 -2.47 16 28 C -0.01 -0.16 10.73 -16.62 -0.18 -0.33 16 29 C -0.15 -1.88 9.43 -39.47 -0.37 -2.26 16 30 C -0.03 -0.47 9.58 -39.22 -0.38 -0.85 16 31 H 0.07 1.05 6.77 -51.93 -0.35 0.70 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 36 H 0.39 9.82 7.82 -40.82 -0.32 9.50 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.09 1.54 6.17 -51.93 -0.32 1.22 16 39 H 0.06 0.73 7.27 -51.93 -0.38 0.35 16 40 H 0.15 1.81 4.56 -52.49 -0.24 1.57 16 41 H 0.13 1.34 6.68 -52.49 -0.35 0.99 16 42 H 0.17 1.45 6.99 -52.49 -0.37 1.08 16 43 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.17 1.43 6.99 -52.49 -0.37 1.06 16 46 H 0.13 1.36 6.68 -52.49 -0.35 1.00 16 47 H 0.14 1.94 7.88 -52.49 -0.41 1.53 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -32.15 381.23 -10.24 -42.38 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.37 Total: 13.09 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -4.44 Total: -8.41 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.23 Total: -58.58 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.15 -10.24 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989122469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.932 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds