Wall clock time and date at job start Tue Mar 31 2020 22:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.41851 * 2 1 4 4 C 1.55127 * 110.34727 * 122.44625 * 2 1 3 5 5 C 1.55161 * 101.48823 * 156.05666 * 4 2 1 6 6 H 1.09003 * 110.71784 * 82.69593 * 5 4 2 7 7 N 1.46504 * 110.87109 * 205.89821 * 5 4 2 8 8 C 1.36938 * 119.99445 * 200.06390 * 7 5 4 9 9 H 1.07992 * 120.00541 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99620 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99822 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00034 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47077 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46827 * 120.00405 * 12 10 8 15 15 H 1.48498 * 109.47138 * 240.00242 * 12 10 8 16 16 C 1.54323 * 102.94196 * 324.33372 * 5 4 2 17 17 N 1.47019 * 107.27040 * 22.19397 * 16 5 4 18 18 C 1.34772 * 125.64526 * 181.02369 * 17 16 5 19 19 O 1.21581 * 119.99937 * 185.49437 * 18 17 16 20 20 C 1.47641 * 120.00514 * 5.49596 * 18 17 16 21 21 C 1.39720 * 120.07408 * 351.97813 * 20 18 17 22 22 C 1.37710 * 119.91815 * 180.02562 * 21 20 18 23 23 C 1.39060 * 120.08328 * 359.97438 * 22 21 20 24 24 N 1.39798 * 119.92445 * 179.97438 * 23 22 21 25 25 C 1.36637 * 125.67669 * 359.69426 * 24 23 22 26 26 C 1.34811 * 108.19507 * 179.86451 * 25 24 23 27 27 C 1.40978 * 107.48311 * 0.38977 * 26 25 24 28 28 C 1.34813 * 107.48000 * 359.75869 * 27 26 25 29 29 C 1.39061 * 120.15473 * 0.02562 * 23 22 21 30 30 C 1.37713 * 120.07685 * 0.02562 * 29 23 22 31 31 H 1.09003 * 109.47410 * 180.84255 * 1 2 3 32 32 H 1.09002 * 109.46733 * 300.83514 * 1 2 3 33 33 H 1.08997 * 109.47715 * 60.83709 * 1 2 3 34 34 H 1.09006 * 111.19415 * 37.95276 * 4 2 1 35 35 H 1.09004 * 110.94183 * 274.05322 * 4 2 1 36 36 H 0.96993 * 119.99854 * 20.06415 * 7 5 4 37 37 H 0.97001 * 120.00076 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.88017 * 262.77349 * 16 5 4 39 39 H 1.09002 * 110.00655 * 141.68290 * 16 5 4 40 40 H 1.07997 * 120.04050 * 0.04398 * 21 20 18 41 41 H 1.08005 * 119.95726 * 180.25823 * 22 21 20 42 42 H 1.08004 * 125.90552 * 0.02562 * 25 24 23 43 43 H 1.08000 * 126.25958 * 180.16346 * 26 25 24 44 44 H 1.08001 * 126.26462 * 179.77412 * 27 26 25 45 45 H 1.08000 * 125.90083 * 180.02562 * 28 27 26 46 46 H 1.07991 * 119.95788 * 179.97438 * 29 23 22 47 47 H 1.08002 * 120.03588 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7803 1.2274 5 6 3.4797 -1.1973 0.7331 6 1 4.1930 -0.3849 0.8726 7 7 3.9361 -2.4088 1.4188 8 6 5.2703 -2.7156 1.4515 9 1 5.9861 -2.0643 0.9722 10 6 5.7028 -3.8633 2.1017 11 7 4.8305 -4.6568 2.6863 12 14 7.5228 -4.2814 2.1470 13 1 8.2890 -3.2363 1.4218 14 1 7.9819 -4.3418 3.5579 15 1 7.7444 -5.5984 1.4976 16 6 3.2524 -1.4724 -0.7683 17 7 2.0431 -0.7383 -1.1684 18 6 1.4972 -0.7362 -2.4006 19 8 0.5511 -0.0128 -2.6451 20 6 2.0480 -1.6123 -3.4536 21 6 3.2330 -2.3174 -3.2288 22 6 3.7442 -3.1333 -4.2135 23 6 3.0822 -3.2562 -5.4302 24 7 3.6043 -4.0849 -6.4276 25 6 4.7534 -4.8182 -6.3337 26 6 4.9214 -5.4876 -7.4918 27 6 3.8438 -5.1506 -8.3360 28 6 3.0537 -4.2918 -7.6609 29 6 1.9025 -2.5558 -5.6574 30 6 1.3861 -1.7373 -4.6777 31 1 -0.3634 -1.0276 0.0151 32 1 -0.3633 0.5268 0.8824 33 1 -0.3634 0.5007 -0.8973 34 1 1.4550 -1.6556 1.4390 35 1 2.1373 -0.1328 2.1016 36 1 3.2933 -2.9936 1.8497 37 1 5.1326 -5.4589 3.1404 38 1 3.1089 -2.5405 -0.9318 39 1 4.1075 -1.1208 -1.3455 40 1 3.7474 -2.2230 -2.2839 41 1 4.6580 -3.6819 -4.0388 42 1 5.4118 -4.8572 -5.4784 43 1 5.7350 -6.1565 -7.7307 44 1 3.6807 -5.5141 -9.3398 45 1 2.1428 -3.8449 -8.0308 46 1 1.3912 -2.6533 -6.6036 47 1 0.4700 -1.1934 -4.8550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989122486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:29 Heat of formation + Delta-G solvation = 90.453404 kcal Electronic energy + Delta-G solvation = -28864.094149 eV Core-core repulsion = 25014.248732 eV Total energy + Delta-G solvation = -3849.845417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.82092 -40.47502 -38.56421 -37.32408 -34.28540 -33.64836 -32.12638 -31.51036 -31.07342 -29.05654 -28.92570 -28.49210 -25.89437 -24.39682 -23.68672 -23.12345 -21.82694 -20.63878 -20.24836 -20.01665 -19.43185 -18.50789 -17.39325 -16.99901 -16.41306 -15.61823 -15.17742 -15.13266 -14.86953 -14.67107 -14.34767 -13.98384 -13.90594 -13.81603 -13.67471 -13.45465 -13.22127 -12.79246 -12.59492 -12.55243 -12.49623 -12.22361 -12.09094 -11.95235 -11.82375 -11.42213 -11.24467 -11.01084 -10.76158 -10.47643 -10.39842 -10.10914 -10.00533 -9.84542 -9.60120 -9.26974 -9.06898 -8.47153 -8.45973 -8.15128 -7.19351 -5.94095 -3.25918 0.44653 1.14287 2.09251 2.62971 2.80292 2.96300 3.09882 3.32756 3.39135 3.41391 3.76674 4.41533 4.44982 4.51850 4.55346 4.80825 4.90800 4.95379 5.01184 5.06243 5.12868 5.17201 5.28702 5.37227 5.40854 5.47253 5.52487 5.54488 5.73204 5.76018 5.78546 5.85087 5.93590 5.98721 6.00615 6.05385 6.08755 6.12985 6.17526 6.32303 6.37964 6.39921 6.49999 6.62572 6.70233 6.75128 6.98695 7.22659 7.54580 7.69486 8.22600 8.28764 9.35322 9.88201 10.23010 11.27586 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007811 B = 0.003766 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3583.709174 B = 7434.046578 C =10710.788848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.170 3.830 6 H 0.068 0.932 7 N -0.713 5.713 8 C -0.253 4.253 9 H 0.074 0.926 10 C -0.006 4.006 11 N -0.927 5.927 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.059 3.941 17 N -0.602 5.602 18 C 0.573 3.427 19 O -0.548 6.548 20 C -0.143 4.143 21 C -0.089 4.089 22 C -0.147 4.147 23 C 0.160 3.840 24 N -0.398 5.398 25 C -0.011 4.011 26 C -0.192 4.192 27 C -0.191 4.191 28 C -0.017 4.017 29 C -0.155 4.155 30 C -0.034 4.034 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.388 0.612 37 H 0.257 0.743 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.179 0.821 41 H 0.137 0.863 42 H 0.168 0.832 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.165 0.835 46 H 0.134 0.866 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 4.300 -15.820 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.058 3.942 6 H 0.086 0.914 7 N -0.353 5.353 8 C -0.384 4.384 9 H 0.092 0.908 10 C -0.203 4.203 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.066 4.066 17 N -0.335 5.335 18 C 0.364 3.636 19 O -0.428 6.428 20 C -0.147 4.147 21 C -0.107 4.107 22 C -0.166 4.166 23 C 0.066 3.934 24 N -0.069 5.069 25 C -0.137 4.137 26 C -0.216 4.216 27 C -0.215 4.215 28 C -0.143 4.143 29 C -0.175 4.175 30 C -0.053 4.053 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.196 0.804 41 H 0.155 0.845 42 H 0.185 0.815 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.182 0.818 46 H 0.151 0.849 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.496 4.806 -15.781 17.388 hybrid contribution 0.941 -0.760 0.049 1.211 sum -4.555 4.046 -15.732 16.871 Atomic orbital electron populations 1.22143 0.94270 1.02559 1.03226 1.21928 0.94842 0.95392 0.84367 0.90693 1.23188 0.97602 1.00400 0.96301 1.21231 0.93344 0.91266 0.88369 0.91445 1.42394 1.06014 1.23733 1.63115 1.19281 0.83780 1.05438 1.29894 0.90825 1.24778 0.97761 0.97517 1.00208 1.69668 1.32637 1.15088 1.39966 0.86142 0.84713 0.78001 0.77435 1.20398 1.21705 1.21715 1.23800 0.85305 0.96953 1.00545 1.48484 1.28220 1.48046 1.08762 1.17797 0.82635 0.82144 0.81061 1.90685 1.28910 1.42369 1.80798 1.19973 0.97675 1.01510 0.95537 1.22987 0.94541 0.92159 1.00979 1.20891 1.01684 1.02190 0.91861 1.18157 0.94297 0.92370 0.88540 1.41675 1.19666 1.34117 1.11466 1.22034 0.90972 0.99187 1.01522 1.21021 1.01462 1.04819 0.94281 1.21007 0.97163 1.02689 1.00628 1.21922 1.01968 1.05010 0.85396 1.20703 0.95849 0.99995 1.00963 1.21058 0.98790 0.94763 0.90691 0.92729 0.92086 0.89900 0.90356 0.89969 0.77780 0.93289 0.89688 0.91312 0.80419 0.84547 0.81493 0.84104 0.84200 0.81805 0.84866 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.77 37.15 0.33 -1.89 16 2 C 0.14 1.94 3.75 -66.30 -0.25 1.69 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.01 6.12 -24.46 -0.15 -2.16 16 5 C 0.17 2.94 3.58 -66.09 -0.24 2.70 16 6 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 7 N -0.71 -15.84 5.18 -51.65 -0.27 -16.11 16 8 C -0.25 -6.32 9.98 -15.06 -0.15 -6.47 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 11 N -0.93 -26.15 13.06 55.49 0.72 -25.43 16 12 Si 0.91 20.86 29.55 -169.99 -5.02 15.84 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.06 0.93 4.62 -3.07 -0.01 0.92 16 17 N -0.60 -9.16 3.24 -168.14 -0.54 -9.71 16 18 C 0.57 9.12 7.52 -12.42 -0.09 9.02 16 19 O -0.55 -9.64 14.18 5.29 0.08 -9.57 16 20 C -0.14 -2.04 5.87 -104.95 -0.62 -2.66 16 21 C -0.09 -1.20 8.58 -39.22 -0.34 -1.54 16 22 C -0.15 -1.85 9.43 -39.47 -0.37 -2.23 16 23 C 0.16 1.96 6.62 -83.61 -0.55 1.41 16 24 N -0.40 -4.71 2.97 -60.90 -0.18 -4.89 16 25 C -0.01 -0.12 10.73 -16.63 -0.18 -0.30 16 26 C -0.19 -2.03 10.86 -39.76 -0.43 -2.47 16 27 C -0.19 -1.94 10.86 -39.76 -0.43 -2.37 16 28 C -0.02 -0.18 10.73 -16.63 -0.18 -0.35 16 29 C -0.16 -1.75 9.43 -39.47 -0.37 -2.13 16 30 C -0.03 -0.42 9.58 -39.22 -0.38 -0.80 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.24 5.93 -51.93 -0.31 0.93 16 34 H 0.08 1.22 7.94 -51.93 -0.41 0.81 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.39 9.34 7.73 -40.82 -0.32 9.02 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.09 1.45 6.54 -51.93 -0.34 1.11 16 39 H 0.07 1.01 6.80 -51.93 -0.35 0.65 16 40 H 0.18 2.47 2.76 -57.77 -0.16 2.32 16 41 H 0.14 1.54 6.68 -52.48 -0.35 1.19 16 42 H 0.17 1.59 6.99 -52.48 -0.37 1.23 16 43 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.16 1.27 6.99 -52.49 -0.37 0.91 16 46 H 0.13 1.17 6.68 -52.49 -0.35 0.81 16 47 H 0.14 1.66 7.67 -52.49 -0.40 1.25 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -29.90 377.68 -10.26 -40.16 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -6.23 Total: 13.87 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -4.51 Total: -9.86 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.27 Total: -56.13 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.90 -10.26 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989122486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.613 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds