Wall clock time and date at job start Tue Mar 31 2020 22:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.41851 * 2 1 4 4 C 1.55127 * 110.34727 * 122.44625 * 2 1 3 5 5 C 1.55161 * 101.48823 * 156.05666 * 4 2 1 6 6 H 1.09003 * 110.71784 * 82.69593 * 5 4 2 7 7 N 1.46504 * 110.87109 * 205.89821 * 5 4 2 8 8 C 1.36938 * 119.99445 * 200.06390 * 7 5 4 9 9 H 1.07992 * 120.00541 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99620 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99822 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00034 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47077 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46827 * 120.00405 * 12 10 8 15 15 H 1.48498 * 109.47138 * 240.00242 * 12 10 8 16 16 C 1.54323 * 102.94196 * 324.33372 * 5 4 2 17 17 N 1.47019 * 107.27040 * 22.19397 * 16 5 4 18 18 C 1.34772 * 125.64526 * 181.02369 * 17 16 5 19 19 O 1.21581 * 119.99937 * 185.49437 * 18 17 16 20 20 C 1.47641 * 120.00514 * 5.49596 * 18 17 16 21 21 C 1.39720 * 120.07408 * 351.97813 * 20 18 17 22 22 C 1.37710 * 119.91815 * 180.02562 * 21 20 18 23 23 C 1.39060 * 120.08328 * 359.97438 * 22 21 20 24 24 N 1.39798 * 119.92445 * 179.97438 * 23 22 21 25 25 C 1.36637 * 125.67669 * 359.69426 * 24 23 22 26 26 C 1.34811 * 108.19507 * 179.86451 * 25 24 23 27 27 C 1.40978 * 107.48311 * 0.38977 * 26 25 24 28 28 C 1.34813 * 107.48000 * 359.75869 * 27 26 25 29 29 C 1.39061 * 120.15473 * 0.02562 * 23 22 21 30 30 C 1.37713 * 120.07685 * 0.02562 * 29 23 22 31 31 H 1.09003 * 109.47410 * 180.84255 * 1 2 3 32 32 H 1.09002 * 109.46733 * 300.83514 * 1 2 3 33 33 H 1.08997 * 109.47715 * 60.83709 * 1 2 3 34 34 H 1.09006 * 111.19415 * 37.95276 * 4 2 1 35 35 H 1.09004 * 110.94183 * 274.05322 * 4 2 1 36 36 H 0.96993 * 119.99854 * 20.06415 * 7 5 4 37 37 H 0.97001 * 120.00076 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.88017 * 262.77349 * 16 5 4 39 39 H 1.09002 * 110.00655 * 141.68290 * 16 5 4 40 40 H 1.07997 * 120.04050 * 0.04398 * 21 20 18 41 41 H 1.08005 * 119.95726 * 180.25823 * 22 21 20 42 42 H 1.08004 * 125.90552 * 0.02562 * 25 24 23 43 43 H 1.08000 * 126.25958 * 180.16346 * 26 25 24 44 44 H 1.08001 * 126.26462 * 179.77412 * 27 26 25 45 45 H 1.08000 * 125.90083 * 180.02562 * 28 27 26 46 46 H 1.07991 * 119.95788 * 179.97438 * 29 23 22 47 47 H 1.08002 * 120.03588 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7803 1.2274 5 6 3.4797 -1.1973 0.7331 6 1 4.1930 -0.3849 0.8726 7 7 3.9361 -2.4088 1.4188 8 6 5.2703 -2.7156 1.4515 9 1 5.9861 -2.0643 0.9722 10 6 5.7028 -3.8633 2.1017 11 7 4.8305 -4.6568 2.6863 12 14 7.5228 -4.2814 2.1470 13 1 8.2890 -3.2363 1.4218 14 1 7.9819 -4.3418 3.5579 15 1 7.7444 -5.5984 1.4976 16 6 3.2524 -1.4724 -0.7683 17 7 2.0431 -0.7383 -1.1684 18 6 1.4972 -0.7362 -2.4006 19 8 0.5511 -0.0128 -2.6451 20 6 2.0480 -1.6123 -3.4536 21 6 3.2330 -2.3174 -3.2288 22 6 3.7442 -3.1333 -4.2135 23 6 3.0822 -3.2562 -5.4302 24 7 3.6043 -4.0849 -6.4276 25 6 4.7534 -4.8182 -6.3337 26 6 4.9214 -5.4876 -7.4918 27 6 3.8438 -5.1506 -8.3360 28 6 3.0537 -4.2918 -7.6609 29 6 1.9025 -2.5558 -5.6574 30 6 1.3861 -1.7373 -4.6777 31 1 -0.3634 -1.0276 0.0151 32 1 -0.3633 0.5268 0.8824 33 1 -0.3634 0.5007 -0.8973 34 1 1.4550 -1.6556 1.4390 35 1 2.1373 -0.1328 2.1016 36 1 3.2933 -2.9936 1.8497 37 1 5.1326 -5.4589 3.1404 38 1 3.1089 -2.5405 -0.9318 39 1 4.1075 -1.1208 -1.3455 40 1 3.7474 -2.2230 -2.2839 41 1 4.6580 -3.6819 -4.0388 42 1 5.4118 -4.8572 -5.4784 43 1 5.7350 -6.1565 -7.7307 44 1 3.6807 -5.5141 -9.3398 45 1 2.1428 -3.8449 -8.0308 46 1 1.3912 -2.6533 -6.6036 47 1 0.4700 -1.1934 -4.8550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989122486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:28 Heat of formation + Delta-G solvation = 75.855480 kcal Electronic energy + Delta-G solvation = -28864.727163 eV Core-core repulsion = 25014.248732 eV Total energy + Delta-G solvation = -3850.478431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.66330 -41.64496 -39.60765 -38.61385 -35.97609 -34.63116 -33.30793 -33.07896 -32.09750 -30.18446 -29.85516 -29.78582 -27.09318 -25.95227 -24.98235 -24.09998 -22.98519 -21.91713 -21.18833 -20.89916 -20.57013 -19.39971 -19.18508 -18.15213 -17.67789 -16.95233 -16.41180 -16.09807 -15.98960 -15.82782 -15.52690 -15.38801 -15.23198 -14.87387 -14.84868 -14.59502 -14.32637 -14.21724 -13.67726 -13.55189 -13.34487 -13.26326 -13.20414 -13.06462 -12.96932 -12.88851 -12.83952 -12.44308 -12.17797 -12.07097 -11.78784 -11.65607 -11.54087 -11.00889 -10.92803 -10.71836 -10.24059 -9.70047 -9.25873 -9.07986 -9.04785 -7.93566 -5.23561 -0.54705 0.17808 1.17203 1.50536 1.52492 1.60863 1.77767 1.86723 1.93277 2.02390 2.57429 2.73222 3.31788 3.37150 3.52247 3.65646 3.78932 3.81257 3.86518 3.99509 4.06082 4.15857 4.18142 4.24977 4.27069 4.42521 4.47284 4.51696 4.58380 4.66607 4.70995 4.72083 4.81778 4.84108 4.95433 5.01517 5.08664 5.11462 5.15699 5.27861 5.29195 5.31818 5.33049 5.49392 5.56898 5.57832 5.92780 6.17749 6.26966 6.39018 6.45478 7.06106 7.35356 8.06309 8.30031 9.29418 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007811 B = 0.003766 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3583.709174 B = 7434.046578 C =10710.788848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 H 0.090 0.910 4 C -0.125 4.125 5 C 0.163 3.837 6 H 0.074 0.926 7 N -0.723 5.723 8 C -0.240 4.240 9 H 0.084 0.916 10 C -0.068 4.068 11 N -0.966 5.966 12 Si 0.965 3.035 13 H -0.263 1.263 14 H -0.298 1.298 15 H -0.297 1.297 16 C 0.074 3.926 17 N -0.604 5.604 18 C 0.571 3.429 19 O -0.568 6.568 20 C -0.163 4.163 21 C -0.093 4.093 22 C -0.155 4.155 23 C 0.159 3.841 24 N -0.407 5.407 25 C -0.035 4.035 26 C -0.198 4.198 27 C -0.199 4.199 28 C -0.026 4.026 29 C -0.148 4.148 30 C -0.033 4.033 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.376 0.624 37 H 0.250 0.750 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.171 0.829 41 H 0.145 0.855 42 H 0.176 0.824 43 H 0.157 0.843 44 H 0.161 0.839 45 H 0.190 0.810 46 H 0.162 0.838 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.921 5.105 -17.597 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.108 0.892 4 C -0.164 4.164 5 C 0.053 3.947 6 H 0.092 0.908 7 N -0.362 5.362 8 C -0.371 4.371 9 H 0.102 0.898 10 C -0.261 4.261 11 N -0.617 5.617 12 Si 0.795 3.205 13 H -0.187 1.187 14 H -0.226 1.226 15 H -0.224 1.224 16 C -0.051 4.051 17 N -0.336 5.336 18 C 0.362 3.638 19 O -0.450 6.450 20 C -0.167 4.167 21 C -0.111 4.111 22 C -0.175 4.175 23 C 0.066 3.934 24 N -0.080 5.080 25 C -0.160 4.160 26 C -0.222 4.222 27 C -0.222 4.222 28 C -0.151 4.151 29 C -0.168 4.168 30 C -0.053 4.053 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.208 0.792 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.188 0.812 41 H 0.163 0.837 42 H 0.193 0.807 43 H 0.174 0.826 44 H 0.179 0.821 45 H 0.207 0.793 46 H 0.180 0.820 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.336 5.657 -17.598 19.239 hybrid contribution 0.860 -0.983 0.480 1.392 sum -4.475 4.674 -17.118 18.300 Atomic orbital electron populations 1.22059 0.93672 1.01969 1.03680 1.22050 0.95317 0.95778 0.83444 0.89239 1.23102 0.95612 1.00371 0.97270 1.21431 0.94860 0.89506 0.88905 0.90780 1.42520 1.04994 1.25036 1.63693 1.19671 0.85133 1.04667 1.27667 0.89832 1.25476 1.01159 0.98164 1.01252 1.69811 1.34198 1.15670 1.41984 0.85200 0.80890 0.77646 0.76781 1.18673 1.22596 1.22443 1.23472 0.86059 0.96235 0.99314 1.48514 1.28015 1.47970 1.09084 1.18069 0.82334 0.82047 0.81368 1.90669 1.29805 1.43344 1.81185 1.19974 0.98449 1.02285 0.95974 1.22847 0.94562 0.92695 1.00978 1.21002 1.02202 1.02223 0.92072 1.18298 0.94429 0.92207 0.88512 1.41806 1.20033 1.34323 1.11824 1.22363 0.91416 0.99827 1.02396 1.21373 1.02033 1.04638 0.94139 1.21381 0.96817 1.02462 1.01549 1.22466 1.02825 1.05010 0.84831 1.20965 0.95351 0.98781 1.01682 1.21190 0.98905 0.94889 0.90293 0.93862 0.89694 0.91255 0.91405 0.88231 0.79173 0.94115 0.91233 0.90120 0.81196 0.83746 0.80728 0.82582 0.82098 0.79330 0.82003 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 8.77 71.98 0.63 -3.40 16 2 C 0.14 3.66 3.75 45.54 0.17 3.83 16 3 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.12 -3.54 6.12 32.06 0.20 -3.34 16 5 C 0.16 5.51 3.58 46.18 0.17 5.67 16 6 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 7 N -0.72 -32.17 5.18 -317.31 -1.64 -33.82 16 8 C -0.24 -11.88 9.98 84.03 0.84 -11.04 16 9 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 10 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 11 N -0.97 -55.70 13.06 21.65 0.28 -55.41 16 12 Si 0.96 43.09 29.55 68.60 2.03 45.12 16 13 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 14 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 15 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 16 C 0.07 2.30 4.62 86.73 0.40 2.70 16 17 N -0.60 -17.98 3.24 -804.15 -2.61 -20.59 16 18 C 0.57 17.92 7.52 86.73 0.65 18.57 16 19 O -0.57 -19.77 14.18 -3.97 -0.06 -19.83 16 20 C -0.16 -4.57 5.87 -20.08 -0.12 -4.69 16 21 C -0.09 -2.50 8.58 22.50 0.19 -2.30 16 22 C -0.16 -3.84 9.43 22.34 0.21 -3.63 16 23 C 0.16 3.69 6.62 38.27 0.25 3.94 16 24 N -0.41 -8.98 2.97 -346.57 -1.03 -10.01 16 25 C -0.03 -0.74 10.73 83.16 0.89 0.15 16 26 C -0.20 -3.86 10.86 22.15 0.24 -3.62 16 27 C -0.20 -3.58 10.86 22.15 0.24 -3.33 16 28 C -0.03 -0.48 10.73 83.16 0.89 0.41 16 29 C -0.15 -3.05 9.43 22.34 0.21 -2.84 16 30 C -0.03 -0.79 9.58 22.50 0.22 -0.58 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 2.02 5.93 -2.39 -0.01 2.01 16 34 H 0.07 2.09 7.94 -2.38 -0.02 2.07 16 35 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.38 18.43 7.73 -92.71 -0.72 17.71 16 37 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 38 H 0.07 2.40 6.54 -2.39 -0.02 2.38 16 39 H 0.08 2.30 6.80 -2.39 -0.02 2.29 16 40 H 0.17 4.75 2.76 -7.87 -0.02 4.72 16 41 H 0.14 3.21 6.68 -2.91 -0.02 3.19 16 42 H 0.18 3.23 6.99 -2.91 -0.02 3.21 16 43 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 44 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 45 H 0.19 2.31 6.99 -2.91 -0.02 2.29 16 46 H 0.16 2.31 6.68 -2.92 -0.02 2.29 16 47 H 0.15 3.29 7.67 -2.91 -0.02 3.27 16 Total: -1.00 -63.88 377.68 4.01 -59.87 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: 0.28 Total: 41.31 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 6.75 Total: -6.65 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -4.99 Total: -119.83 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.06 Total: -19.83 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -63.88 4.01 -59.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989122486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.730 kcal (2) G-P(sol) polarization free energy of solvation -63.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds