Wall clock time and date at job start Tue Mar 31 2020 22:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.99695 * 2 1 4 4 C 1.54335 * 109.77770 * 121.15978 * 2 1 3 5 5 C 1.55159 * 103.02132 * 97.49448 * 4 2 1 6 6 H 1.08999 * 111.00627 * 277.23024 * 5 4 2 7 7 N 1.46507 * 111.00019 * 153.38018 * 5 4 2 8 8 C 1.36937 * 119.99524 * 161.35380 * 7 5 4 9 9 H 1.08002 * 120.00057 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99634 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99861 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00426 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47063 * 89.99939 * 12 10 8 14 14 H 1.48499 * 109.47258 * 210.00112 * 12 10 8 15 15 H 1.48501 * 109.47078 * 330.00148 * 12 10 8 16 16 C 1.54906 * 101.57735 * 35.30825 * 5 4 2 17 17 N 1.47014 * 109.88198 * 238.89825 * 2 1 3 18 18 C 1.34774 * 125.64922 * 59.56282 * 17 2 1 19 19 O 1.21585 * 120.00191 * 183.66249 * 18 17 2 20 20 C 1.47638 * 120.00061 * 3.66745 * 18 17 2 21 21 C 1.39722 * 120.08309 * 187.01650 * 20 18 17 22 22 C 1.37704 * 119.92583 * 180.02562 * 21 20 18 23 23 C 1.39059 * 120.07478 * 359.97438 * 22 21 20 24 24 N 1.39807 * 119.92036 * 180.02562 * 23 22 21 25 25 C 1.36644 * 125.67496 * 359.68076 * 24 23 22 26 26 C 1.34810 * 108.19383 * 179.89524 * 25 24 23 27 27 C 1.40990 * 107.48260 * 0.37279 * 26 25 24 28 28 C 1.34807 * 107.48255 * 359.76939 * 27 26 25 29 29 C 1.39052 * 120.16062 * 0.29285 * 23 22 21 30 30 C 1.37711 * 120.07816 * 359.45123 * 29 23 22 31 31 H 1.08998 * 109.47393 * 199.58512 * 1 2 3 32 32 H 1.09000 * 109.47671 * 319.58915 * 1 2 3 33 33 H 1.09003 * 109.47152 * 79.58380 * 1 2 3 34 34 H 1.09008 * 110.85206 * 339.02784 * 4 2 1 35 35 H 1.09003 * 110.66761 * 215.88317 * 4 2 1 36 36 H 0.96994 * 119.99822 * 341.35413 * 7 5 4 37 37 H 0.97001 * 120.00290 * 179.97438 * 11 10 8 38 38 H 1.08995 * 110.36620 * 204.14795 * 16 5 4 39 39 H 1.09007 * 110.46040 * 81.87482 * 16 5 4 40 40 H 1.08007 * 120.03598 * 0.03851 * 21 20 18 41 41 H 1.07996 * 119.96320 * 179.97438 * 22 21 20 42 42 H 1.07997 * 125.90039 * 0.02562 * 25 24 23 43 43 H 1.08004 * 126.25847 * 180.14496 * 26 25 24 44 44 H 1.08003 * 126.25643 * 179.79243 * 27 26 25 45 45 H 1.08001 * 125.90826 * 179.97438 * 28 27 26 46 46 H 1.08001 * 119.96418 * 179.73080 * 29 23 22 47 47 H 1.08004 * 120.04143 * 180.27283 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2428 5 6 2.3560 -2.1697 0.6917 6 1 1.4521 -2.7778 0.6582 7 7 3.3999 -2.8275 1.4817 8 6 3.5511 -4.1870 1.4195 9 1 2.9011 -4.7743 0.7879 10 6 4.5405 -4.8102 2.1676 11 7 4.6855 -6.1170 2.1083 12 14 5.6661 -3.7942 3.2585 13 1 5.0666 -3.6729 4.6117 14 1 6.9893 -4.4603 3.3612 15 1 5.8372 -2.4416 2.6699 16 6 2.8612 -1.8466 -0.7366 17 7 2.0299 -0.7142 -1.1838 18 6 1.7753 -0.3847 -2.4656 19 8 2.1881 -1.0878 -3.3675 20 6 0.9953 0.8301 -2.7746 21 6 0.6048 1.0961 -4.0895 22 6 -0.1222 2.2304 -4.3741 23 6 -0.4683 3.1105 -3.3545 24 7 -1.2069 4.2609 -3.6470 25 6 -1.6415 4.6349 -4.8874 26 6 -2.3179 5.7945 -4.7644 27 6 -2.2946 6.1560 -3.4018 28 6 -1.6092 5.2015 -2.7413 29 6 -0.0766 2.8519 -2.0456 30 6 0.6460 1.7168 -1.7528 31 1 -0.3634 -0.9682 0.3445 32 1 -0.3634 0.7824 0.6662 33 1 -0.3633 0.1858 -1.0108 34 1 1.2884 -0.7949 2.0193 35 1 2.9600 -0.2826 1.6226 36 1 3.9839 -2.2999 2.0487 37 1 5.3771 -6.5525 2.6308 38 1 2.7178 -2.7049 -1.3929 39 1 3.9125 -1.5595 -0.7131 40 1 0.8728 0.4127 -4.8817 41 1 -0.4240 2.4368 -5.3903 42 1 -1.4740 4.0938 -5.8069 43 1 -2.7882 6.3476 -5.5640 44 1 -2.7440 7.0365 -2.9668 45 1 -1.4117 5.1834 -1.6796 46 1 -0.3434 3.5397 -1.2568 47 1 0.9461 1.5143 -0.7352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989122489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:33 Heat of formation + Delta-G solvation = 109.118786 kcal Electronic energy + Delta-G solvation = -28647.624652 eV Core-core repulsion = 24798.588626 eV Total energy + Delta-G solvation = -3849.036026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04182 -40.85817 -38.66676 -37.61817 -34.90845 -33.57621 -32.21932 -31.66726 -31.10705 -29.89659 -29.22199 -28.40241 -25.96827 -24.52963 -23.52495 -23.11401 -22.15810 -20.58655 -20.41866 -20.25357 -19.79386 -18.73958 -17.92581 -17.18357 -16.22779 -15.82053 -15.45762 -15.22577 -15.13084 -14.85260 -14.38256 -14.36795 -14.17433 -13.96445 -13.71694 -13.52597 -13.13847 -12.90984 -12.83648 -12.69917 -12.58618 -12.45190 -12.41853 -12.26921 -11.83155 -11.62794 -11.39126 -11.12016 -10.91813 -10.79182 -10.43374 -10.14364 -10.07734 -9.90320 -9.68285 -9.38398 -9.10036 -8.65372 -8.58813 -8.31274 -7.43530 -5.86436 -3.25338 0.24902 0.92169 1.90642 2.42736 2.61709 2.83025 2.98725 3.30198 3.32063 3.39365 3.58462 4.18697 4.29004 4.34384 4.49115 4.51388 4.59810 4.70129 4.71526 4.81288 4.82739 4.96497 5.07527 5.16667 5.19597 5.26724 5.33232 5.44417 5.51270 5.54517 5.56973 5.66540 5.68734 5.76900 5.84130 5.85794 5.92614 5.94142 5.99241 6.05538 6.20939 6.26642 6.39319 6.48548 6.51050 6.69347 6.78996 7.02739 7.60134 7.87262 8.20367 8.31714 9.07832 9.79462 9.96678 11.31095 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028677 B = 0.002199 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.157014 B =12731.695171 C =13342.522407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.119 3.881 3 H 0.086 0.914 4 C -0.140 4.140 5 C 0.179 3.821 6 H 0.074 0.926 7 N -0.735 5.735 8 C -0.254 4.254 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.885 3.115 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.082 3.918 17 N -0.603 5.603 18 C 0.570 3.430 19 O -0.538 6.538 20 C -0.145 4.145 21 C -0.030 4.030 22 C -0.156 4.156 23 C 0.162 3.838 24 N -0.398 5.398 25 C -0.015 4.015 26 C -0.190 4.190 27 C -0.190 4.190 28 C -0.014 4.014 29 C -0.157 4.157 30 C -0.087 4.087 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.166 0.834 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.166 0.834 46 H 0.134 0.866 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.989 25.092 -8.841 30.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.015 3.985 3 H 0.103 0.897 4 C -0.179 4.179 5 C 0.067 3.933 6 H 0.092 0.908 7 N -0.377 5.377 8 C -0.384 4.384 9 H 0.110 0.890 10 C -0.187 4.187 11 N -0.574 5.574 12 Si 0.715 3.285 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.043 4.043 17 N -0.336 5.336 18 C 0.359 3.641 19 O -0.417 6.417 20 C -0.149 4.149 21 C -0.049 4.049 22 C -0.175 4.175 23 C 0.069 3.931 24 N -0.070 5.070 25 C -0.141 4.141 26 C -0.214 4.214 27 C -0.214 4.214 28 C -0.140 4.140 29 C -0.177 4.177 30 C -0.104 4.104 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.162 0.838 41 H 0.153 0.847 42 H 0.183 0.817 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.183 0.817 46 H 0.152 0.848 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.638 24.201 -9.356 29.312 hybrid contribution 0.870 0.742 0.691 1.336 sum -12.768 24.942 -8.665 29.330 Atomic orbital electron populations 1.22762 0.94544 1.03580 1.03082 1.21983 0.94450 0.95889 0.86173 0.89717 1.23063 1.01975 0.97125 0.95741 1.21254 0.92685 0.90866 0.88455 0.90822 1.42642 1.37763 1.05359 1.51933 1.19064 1.14752 0.81143 1.23408 0.88958 1.24695 0.98821 0.95401 0.99779 1.69701 1.35711 1.07496 1.44512 0.86556 0.81079 0.79687 0.81189 1.20937 1.21617 1.20292 1.23391 0.94351 0.87748 0.98780 1.48476 1.50056 1.30976 1.04129 1.17782 0.80079 0.84675 0.81573 1.90794 1.53228 1.52708 1.44924 1.20020 1.03342 0.97025 0.94467 1.21136 0.92635 0.95114 0.96015 1.20735 1.02899 0.95246 0.98642 1.18137 0.93754 0.86399 0.94793 1.41674 1.40534 1.16735 1.08035 1.21966 1.04473 0.99478 0.88169 1.21033 1.05446 0.97729 0.97195 1.21033 1.05386 1.00875 0.94113 1.21957 1.04833 0.91427 0.95817 1.20770 1.03001 0.99530 0.94356 1.22927 0.93816 0.91555 1.02142 0.91061 0.91036 0.91020 0.89504 0.90452 0.80214 0.92867 0.90318 0.91282 0.83781 0.84736 0.81699 0.84113 0.84099 0.81662 0.84772 0.80692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 7.64 37.16 0.28 -1.39 16 2 C 0.12 1.30 2.72 -66.95 -0.18 1.12 16 3 H 0.09 0.75 6.04 -51.93 -0.31 0.44 16 4 C -0.14 -1.76 6.01 -24.89 -0.15 -1.91 16 5 C 0.18 3.12 3.69 -65.78 -0.24 2.88 16 6 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 7 N -0.74 -16.09 5.08 -51.35 -0.26 -16.35 16 8 C -0.25 -6.84 10.47 -15.06 -0.16 -7.00 16 9 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 10 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 11 N -0.93 -28.41 13.97 55.49 0.78 -27.63 16 12 Si 0.88 21.16 27.73 -169.99 -4.71 16.45 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.28 -6.16 6.52 56.52 0.37 -5.80 16 16 C 0.08 1.45 6.62 -2.53 -0.02 1.43 16 17 N -0.60 -8.84 3.08 -165.66 -0.51 -9.35 16 18 C 0.57 8.85 7.53 -12.42 -0.09 8.76 16 19 O -0.54 -10.36 16.60 5.29 0.09 -10.27 16 20 C -0.14 -1.74 5.17 -104.95 -0.54 -2.29 16 21 C -0.03 -0.32 9.58 -39.22 -0.38 -0.70 16 22 C -0.16 -1.43 9.43 -39.47 -0.37 -1.80 16 23 C 0.16 1.51 6.62 -83.61 -0.55 0.96 16 24 N -0.40 -3.59 2.97 -60.90 -0.18 -3.78 16 25 C -0.01 -0.12 10.73 -16.62 -0.18 -0.30 16 26 C -0.19 -1.52 10.86 -39.76 -0.43 -1.95 16 27 C -0.19 -1.51 10.86 -39.76 -0.43 -1.94 16 28 C -0.01 -0.12 10.73 -16.63 -0.18 -0.29 16 29 C -0.16 -1.33 9.43 -39.47 -0.37 -1.70 16 30 C -0.09 -0.82 6.51 -39.22 -0.26 -1.07 16 31 H 0.07 0.72 7.99 -51.93 -0.41 0.31 16 32 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 33 H 0.07 0.71 4.75 -51.93 -0.25 0.46 16 34 H 0.09 0.95 7.83 -51.92 -0.41 0.55 16 35 H 0.08 0.95 7.99 -51.93 -0.42 0.53 16 36 H 0.36 7.74 5.57 -40.82 -0.23 7.51 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.08 1.57 8.00 -51.93 -0.42 1.15 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.14 1.57 7.66 -52.48 -0.40 1.16 16 41 H 0.13 0.95 6.68 -52.49 -0.35 0.60 16 42 H 0.17 0.98 6.99 -52.49 -0.37 0.61 16 43 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.17 0.93 6.99 -52.49 -0.37 0.56 16 46 H 0.13 0.82 6.68 -52.49 -0.35 0.47 16 47 H 0.18 1.43 2.21 -54.47 -0.12 1.31 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -33.60 372.51 -9.64 -43.24 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.10 Total: 9.09 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -4.35 Total: -7.01 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.18 Total: -57.10 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.60 -9.64 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989122489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.358 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds