Wall clock time and date at job start Tue Mar 31 2020 22:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.99695 * 2 1 4 4 C 1.54335 * 109.77770 * 121.15978 * 2 1 3 5 5 C 1.55159 * 103.02132 * 97.49448 * 4 2 1 6 6 H 1.08999 * 111.00627 * 277.23024 * 5 4 2 7 7 N 1.46507 * 111.00019 * 153.38018 * 5 4 2 8 8 C 1.36937 * 119.99524 * 161.35380 * 7 5 4 9 9 H 1.08002 * 120.00057 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99634 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99861 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00426 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47063 * 89.99939 * 12 10 8 14 14 H 1.48499 * 109.47258 * 210.00112 * 12 10 8 15 15 H 1.48501 * 109.47078 * 330.00148 * 12 10 8 16 16 C 1.54906 * 101.57735 * 35.30825 * 5 4 2 17 17 N 1.47014 * 109.88198 * 238.89825 * 2 1 3 18 18 C 1.34774 * 125.64922 * 59.56282 * 17 2 1 19 19 O 1.21585 * 120.00191 * 183.66249 * 18 17 2 20 20 C 1.47638 * 120.00061 * 3.66745 * 18 17 2 21 21 C 1.39722 * 120.08309 * 187.01650 * 20 18 17 22 22 C 1.37704 * 119.92583 * 180.02562 * 21 20 18 23 23 C 1.39059 * 120.07478 * 359.97438 * 22 21 20 24 24 N 1.39807 * 119.92036 * 180.02562 * 23 22 21 25 25 C 1.36644 * 125.67496 * 359.68076 * 24 23 22 26 26 C 1.34810 * 108.19383 * 179.89524 * 25 24 23 27 27 C 1.40990 * 107.48260 * 0.37279 * 26 25 24 28 28 C 1.34807 * 107.48255 * 359.76939 * 27 26 25 29 29 C 1.39052 * 120.16062 * 0.29285 * 23 22 21 30 30 C 1.37711 * 120.07816 * 359.45123 * 29 23 22 31 31 H 1.08998 * 109.47393 * 199.58512 * 1 2 3 32 32 H 1.09000 * 109.47671 * 319.58915 * 1 2 3 33 33 H 1.09003 * 109.47152 * 79.58380 * 1 2 3 34 34 H 1.09008 * 110.85206 * 339.02784 * 4 2 1 35 35 H 1.09003 * 110.66761 * 215.88317 * 4 2 1 36 36 H 0.96994 * 119.99822 * 341.35413 * 7 5 4 37 37 H 0.97001 * 120.00290 * 179.97438 * 11 10 8 38 38 H 1.08995 * 110.36620 * 204.14795 * 16 5 4 39 39 H 1.09007 * 110.46040 * 81.87482 * 16 5 4 40 40 H 1.08007 * 120.03598 * 0.03851 * 21 20 18 41 41 H 1.07996 * 119.96320 * 179.97438 * 22 21 20 42 42 H 1.07997 * 125.90039 * 0.02562 * 25 24 23 43 43 H 1.08004 * 126.25847 * 180.14496 * 26 25 24 44 44 H 1.08003 * 126.25643 * 179.79243 * 27 26 25 45 45 H 1.08001 * 125.90826 * 179.97438 * 28 27 26 46 46 H 1.08001 * 119.96418 * 179.73080 * 29 23 22 47 47 H 1.08004 * 120.04143 * 180.27283 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2428 5 6 2.3560 -2.1697 0.6917 6 1 1.4521 -2.7778 0.6582 7 7 3.3999 -2.8275 1.4817 8 6 3.5511 -4.1870 1.4195 9 1 2.9011 -4.7743 0.7879 10 6 4.5405 -4.8102 2.1676 11 7 4.6855 -6.1170 2.1083 12 14 5.6661 -3.7942 3.2585 13 1 5.0666 -3.6729 4.6117 14 1 6.9893 -4.4603 3.3612 15 1 5.8372 -2.4416 2.6699 16 6 2.8612 -1.8466 -0.7366 17 7 2.0299 -0.7142 -1.1838 18 6 1.7753 -0.3847 -2.4656 19 8 2.1881 -1.0878 -3.3675 20 6 0.9953 0.8301 -2.7746 21 6 0.6048 1.0961 -4.0895 22 6 -0.1222 2.2304 -4.3741 23 6 -0.4683 3.1105 -3.3545 24 7 -1.2069 4.2609 -3.6470 25 6 -1.6415 4.6349 -4.8874 26 6 -2.3179 5.7945 -4.7644 27 6 -2.2946 6.1560 -3.4018 28 6 -1.6092 5.2015 -2.7413 29 6 -0.0766 2.8519 -2.0456 30 6 0.6460 1.7168 -1.7528 31 1 -0.3634 -0.9682 0.3445 32 1 -0.3634 0.7824 0.6662 33 1 -0.3633 0.1858 -1.0108 34 1 1.2884 -0.7949 2.0193 35 1 2.9600 -0.2826 1.6226 36 1 3.9839 -2.2999 2.0487 37 1 5.3771 -6.5525 2.6308 38 1 2.7178 -2.7049 -1.3929 39 1 3.9125 -1.5595 -0.7131 40 1 0.8728 0.4127 -4.8817 41 1 -0.4240 2.4368 -5.3903 42 1 -1.4740 4.0938 -5.8069 43 1 -2.7882 6.3476 -5.5640 44 1 -2.7440 7.0365 -2.9668 45 1 -1.4117 5.1834 -1.6796 46 1 -0.3434 3.5397 -1.2568 47 1 0.9461 1.5143 -0.7352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989122489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:32 Heat of formation + Delta-G solvation = 89.149102 kcal Electronic energy + Delta-G solvation = -28648.490603 eV Core-core repulsion = 24798.588626 eV Total energy + Delta-G solvation = -3849.901976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.66976 -41.86553 -39.57426 -38.84023 -36.47552 -34.53930 -33.60848 -32.90733 -32.14927 -31.03910 -29.83064 -29.44212 -27.04287 -25.87802 -24.73743 -23.95215 -23.24253 -21.84565 -21.21592 -20.96648 -20.70983 -19.85578 -19.34844 -18.30512 -17.42081 -16.99271 -16.36825 -16.25056 -15.98982 -15.95534 -15.71629 -15.46907 -15.18898 -14.81127 -14.71210 -14.69947 -14.39407 -14.05877 -13.98612 -13.69155 -13.60016 -13.33478 -13.21992 -13.07972 -12.96718 -12.91571 -12.66686 -12.40895 -12.16169 -12.01823 -11.90400 -11.84459 -11.40141 -11.14976 -11.01352 -10.83793 -10.08611 -9.83010 -9.38688 -9.21405 -9.02503 -8.04089 -5.41066 -0.53316 0.21790 1.19104 1.38804 1.44036 1.50673 1.78655 1.85033 1.90272 2.06296 2.48079 2.74566 3.22884 3.33133 3.38009 3.54991 3.67490 3.72925 3.91453 3.96867 4.02357 4.07354 4.13835 4.24384 4.29568 4.34696 4.34900 4.49270 4.60323 4.69424 4.73696 4.75771 4.85580 4.87424 4.93810 5.00377 5.05101 5.10895 5.17371 5.22220 5.30987 5.32436 5.37158 5.41653 5.56557 5.74319 5.96124 6.18995 6.21346 6.43466 6.45809 7.00853 7.04935 7.76689 7.97753 9.17032 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028677 B = 0.002199 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.157014 B =12731.695171 C =13342.522407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.116 3.884 3 H 0.123 0.877 4 C -0.126 4.126 5 C 0.171 3.829 6 H 0.059 0.941 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.051 0.949 10 C -0.064 4.064 11 N -0.983 5.983 12 Si 0.961 3.039 13 H -0.271 1.271 14 H -0.301 1.301 15 H -0.246 1.246 16 C 0.089 3.911 17 N -0.603 5.603 18 C 0.563 3.437 19 O -0.592 6.592 20 C -0.165 4.165 21 C -0.040 4.040 22 C -0.156 4.156 23 C 0.163 3.837 24 N -0.407 5.407 25 C -0.033 4.033 26 C -0.200 4.200 27 C -0.202 4.202 28 C -0.023 4.023 29 C -0.150 4.150 30 C -0.073 4.073 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.372 0.628 37 H 0.258 0.742 38 H 0.038 0.962 39 H 0.059 0.941 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.180 0.820 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.192 0.808 46 H 0.167 0.833 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 30.060 -6.974 34.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.014 3.986 3 H 0.140 0.860 4 C -0.164 4.164 5 C 0.061 3.939 6 H 0.077 0.923 7 N -0.378 5.378 8 C -0.370 4.370 9 H 0.069 0.931 10 C -0.255 4.255 11 N -0.633 5.633 12 Si 0.787 3.213 13 H -0.197 1.197 14 H -0.228 1.228 15 H -0.171 1.171 16 C -0.037 4.037 17 N -0.335 5.335 18 C 0.355 3.645 19 O -0.475 6.475 20 C -0.169 4.169 21 C -0.059 4.059 22 C -0.175 4.175 23 C 0.069 3.931 24 N -0.079 5.079 25 C -0.158 4.158 26 C -0.224 4.224 27 C -0.226 4.226 28 C -0.148 4.148 29 C -0.169 4.169 30 C -0.090 4.090 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.109 0.891 36 H 0.207 0.793 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.197 0.803 43 H 0.172 0.828 44 H 0.175 0.825 45 H 0.209 0.791 46 H 0.185 0.815 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -14.925 29.264 -7.489 33.693 hybrid contribution 1.094 -0.749 -0.042 1.326 sum -13.831 28.514 -7.531 32.574 Atomic orbital electron populations 1.22780 0.92764 1.04480 1.03707 1.22355 0.95876 0.96846 0.83514 0.86020 1.23047 1.03560 0.92925 0.96883 1.21380 0.90762 0.93663 0.88123 0.92262 1.42531 1.39073 1.03482 1.52728 1.18975 1.13249 0.83353 1.21457 0.93075 1.25606 1.01117 0.96623 1.02183 1.69907 1.37014 1.09920 1.46422 0.85337 0.77710 0.79002 0.79240 1.19713 1.22798 1.17053 1.22988 0.94504 0.87894 0.98275 1.48513 1.49492 1.30192 1.05270 1.18444 0.79659 0.85328 0.81066 1.90755 1.55518 1.54714 1.46494 1.19781 1.04868 0.96446 0.95789 1.21107 0.93433 0.95797 0.95592 1.20848 1.02318 0.94517 0.99827 1.18333 0.93158 0.86322 0.95237 1.41797 1.40785 1.16800 1.08514 1.22368 1.04736 0.99989 0.88740 1.21371 1.05256 0.97814 0.97940 1.21384 1.05454 1.01560 0.94205 1.22473 1.04424 0.90992 0.96951 1.21079 1.01751 0.99292 0.94771 1.22971 0.93222 0.90989 1.01858 0.92357 0.86852 0.91645 0.86937 0.89062 0.79299 0.93278 0.94339 0.92283 0.85028 0.83072 0.80270 0.82793 0.82518 0.79139 0.81510 0.79131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 7.64 71.98 0.55 -2.06 16 2 C 0.12 2.15 2.72 45.35 0.12 2.27 16 3 H 0.12 1.49 6.04 -2.39 -0.01 1.47 16 4 C -0.13 -2.73 6.01 31.79 0.19 -2.53 16 5 C 0.17 5.94 3.69 46.38 0.17 6.11 16 6 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 7 N -0.74 -31.98 5.08 -316.37 -1.61 -33.59 16 8 C -0.24 -13.35 10.47 84.03 0.88 -12.47 16 9 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 10 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 11 N -0.98 -62.73 13.97 21.65 0.30 -62.43 16 12 Si 0.96 43.68 27.73 68.60 1.90 45.58 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 15 H -0.25 -9.83 6.52 99.48 0.65 -9.18 16 16 C 0.09 3.28 6.62 86.85 0.57 3.86 16 17 N -0.60 -17.49 3.08 -796.29 -2.45 -19.95 16 18 C 0.56 17.94 7.53 86.73 0.65 18.59 16 19 O -0.59 -24.47 16.60 -3.98 -0.07 -24.54 16 20 C -0.17 -3.82 5.17 -20.08 -0.10 -3.93 16 21 C -0.04 -0.86 9.58 22.50 0.22 -0.64 16 22 C -0.16 -2.61 9.43 22.34 0.21 -2.40 16 23 C 0.16 2.54 6.62 38.26 0.25 2.80 16 24 N -0.41 -6.07 2.97 -346.57 -1.03 -7.10 16 25 C -0.03 -0.47 10.73 83.16 0.89 0.42 16 26 C -0.20 -2.72 10.86 22.16 0.24 -2.48 16 27 C -0.20 -2.60 10.86 22.16 0.24 -2.36 16 28 C -0.02 -0.29 10.73 83.16 0.89 0.60 16 29 C -0.15 -1.87 9.43 22.34 0.21 -1.66 16 30 C -0.07 -1.11 6.51 22.50 0.15 -0.97 16 31 H 0.06 1.03 7.99 -2.39 -0.02 1.01 16 32 H 0.11 0.76 8.11 -2.39 -0.02 0.74 16 33 H 0.06 1.09 4.75 -2.39 -0.01 1.08 16 34 H 0.11 1.93 7.83 -2.38 -0.02 1.91 16 35 H 0.09 1.80 7.99 -2.39 -0.02 1.78 16 36 H 0.37 14.98 5.57 -92.71 -0.52 14.46 16 37 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.04 1.68 8.00 -2.39 -0.02 1.66 16 39 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.13 3.09 7.66 -2.91 -0.02 3.06 16 41 H 0.15 1.90 6.68 -2.91 -0.02 1.88 16 42 H 0.18 1.78 6.99 -2.91 -0.02 1.76 16 43 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.19 1.18 6.99 -2.91 -0.02 1.16 16 46 H 0.17 1.00 6.68 -2.91 -0.02 0.98 16 47 H 0.19 2.15 2.21 -4.77 -0.01 2.14 16 Total: -1.00 -79.61 372.51 4.29 -75.31 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.43 Total: 26.79 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 6.81 Total: -0.08 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -4.78 Total: -123.07 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.07 Total: -24.54 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.90 Total: 45.58 kcal Total: -79.61 4.29 -75.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989122489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.463 kcal (2) G-P(sol) polarization free energy of solvation -79.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds