Wall clock time and date at job start Tue Mar 31 2020 22:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.41121 * 2 1 4 4 C 1.55124 * 110.34542 * 122.44309 * 2 1 3 5 5 C 1.55164 * 101.48329 * 156.05755 * 4 2 1 6 6 H 1.09000 * 110.86930 * 82.77527 * 5 4 2 7 7 N 1.46503 * 110.71799 * 205.97136 * 5 4 2 8 8 C 1.36939 * 119.99647 * 199.97921 * 7 5 4 9 9 H 1.08001 * 120.00115 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00167 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99629 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00180 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47413 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47048 * 120.00271 * 12 10 8 15 15 H 1.48507 * 109.47129 * 239.99936 * 12 10 8 16 16 C 1.54319 * 102.94235 * 324.33605 * 5 4 2 17 17 N 1.47015 * 107.27517 * 22.19149 * 16 5 4 18 18 C 1.34774 * 125.65090 * 181.02384 * 17 16 5 19 19 O 1.21555 * 120.00269 * 185.34167 * 18 17 16 20 20 C 1.47854 * 119.99914 * 5.33782 * 18 17 16 21 21 C 1.39611 * 120.11353 * 351.85509 * 20 18 17 22 22 C 1.37979 * 119.98757 * 180.02562 * 21 20 18 23 23 C 1.38264 * 120.21351 * 0.02562 * 22 21 20 24 24 C 1.38900 * 120.22994 * 0.02562 * 23 22 21 25 25 N 1.40229 * 119.99444 * 179.97438 * 24 23 22 26 26 C 1.36571 * 125.66839 * 179.69482 * 25 24 23 27 27 C 1.34847 * 108.19952 * 179.83024 * 26 25 24 28 28 C 1.40948 * 107.46715 * 0.42671 * 27 26 25 29 29 C 1.34845 * 107.46864 * 359.73671 * 28 27 26 30 30 C 1.38585 * 120.01178 * 359.97438 * 24 23 22 31 31 H 1.09004 * 109.47122 * 180.84048 * 1 2 3 32 32 H 1.09001 * 109.47062 * 300.83821 * 1 2 3 33 33 H 1.08993 * 109.47543 * 60.83892 * 1 2 3 34 34 H 1.08999 * 111.19315 * 37.95943 * 4 2 1 35 35 H 1.08997 * 110.94307 * 274.05718 * 4 2 1 36 36 H 0.96998 * 120.00118 * 19.97694 * 7 5 4 37 37 H 0.97000 * 120.00092 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.87946 * 262.76869 * 16 5 4 39 39 H 1.09002 * 109.88160 * 141.61315 * 16 5 4 40 40 H 1.08004 * 120.00968 * 0.04604 * 21 20 18 41 41 H 1.08002 * 119.89434 * 180.30006 * 22 21 20 42 42 H 1.08004 * 119.88195 * 179.97438 * 23 22 21 43 43 H 1.07998 * 125.89764 * 359.97438 * 26 25 24 44 44 H 1.08001 * 126.26553 * 180.15601 * 27 26 25 45 45 H 1.08000 * 126.26371 * 179.71298 * 28 27 26 46 46 H 1.08000 * 125.90118 * 180.02562 * 29 28 27 47 47 H 1.08005 * 120.11180 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0694 -0.7803 1.2275 5 6 3.4798 -1.1972 0.7331 6 1 4.1954 -0.3870 0.8727 7 7 3.9322 -2.4098 1.4196 8 6 5.2654 -2.7205 1.4532 9 1 5.9834 -2.0715 0.9740 10 6 5.6942 -3.8692 2.1041 11 7 4.8192 -4.6598 2.6886 12 14 7.5127 -4.2934 2.1493 13 1 8.2824 -3.2515 1.4233 14 1 7.9719 -4.3543 3.5603 15 1 7.7297 -5.6117 1.5009 16 6 3.2525 -1.4723 -0.7683 17 7 2.0431 -0.7383 -1.1684 18 6 1.4972 -0.7362 -2.4006 19 8 0.5494 -0.0151 -2.6443 20 6 2.0511 -1.6109 -3.4561 21 6 3.2383 -2.3111 -3.2340 22 6 3.7532 -3.1263 -4.2210 23 6 3.0973 -3.2525 -5.4316 24 6 1.9160 -2.5592 -5.6626 25 7 1.2552 -2.6904 -6.8924 26 6 0.0891 -2.0701 -7.2400 27 6 -0.2266 -2.4410 -8.4974 28 6 0.7739 -3.3295 -8.9403 29 6 1.6674 -3.4643 -7.9394 30 6 1.3905 -1.7378 -4.6778 31 1 -0.3633 -1.0276 0.0151 32 1 -0.3633 0.5268 0.8824 33 1 -0.3634 0.5007 -0.8973 34 1 1.4551 -1.6555 1.4390 35 1 2.1373 -0.1327 2.1016 36 1 3.2873 -2.9924 1.8503 37 1 5.1187 -5.4627 3.1431 38 1 3.1091 -2.5404 -0.9318 39 1 4.1081 -1.1188 -1.3437 40 1 3.7536 -2.2149 -2.2897 41 1 4.6692 -3.6710 -4.0458 42 1 3.5053 -3.8917 -6.2006 43 1 -0.4803 -1.3969 -6.6164 44 1 -1.0906 -2.1198 -9.0603 45 1 0.8169 -3.8139 -9.9046 46 1 2.5559 -4.0780 -7.9620 47 1 0.4723 -1.1977 -4.8558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989128623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:43 Heat of formation + Delta-G solvation = 90.750751 kcal Electronic energy + Delta-G solvation = -28848.864013 eV Core-core repulsion = 24999.031490 eV Total energy + Delta-G solvation = -3849.832524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.79965 -40.49250 -38.58525 -37.36325 -34.30556 -33.69738 -32.07326 -31.52763 -31.06939 -29.03985 -28.81874 -28.53782 -25.88910 -24.50009 -23.70187 -23.19752 -21.82130 -20.60371 -20.39694 -20.04849 -19.46196 -18.26577 -17.35519 -16.74174 -16.32502 -15.82984 -15.46471 -15.16428 -14.97652 -14.67474 -14.37746 -14.10530 -13.83591 -13.79146 -13.64445 -13.39990 -13.34483 -12.81721 -12.62738 -12.51674 -12.42830 -12.24577 -12.01217 -11.90912 -11.74910 -11.53352 -11.26766 -11.02403 -10.77112 -10.49507 -10.41388 -10.11980 -10.02825 -9.85261 -9.65053 -9.25033 -9.07714 -8.45933 -8.44310 -8.18426 -7.20032 -5.94704 -3.26539 0.59209 0.88493 2.20878 2.58907 2.81037 2.90787 3.08332 3.32107 3.38483 3.40761 3.74088 4.31721 4.44854 4.51961 4.69016 4.79620 4.90195 4.92352 5.00788 5.04599 5.09838 5.16240 5.30019 5.35538 5.39123 5.45990 5.50722 5.54303 5.66681 5.73785 5.76720 5.79611 5.93741 5.99665 6.01869 6.06753 6.09945 6.13909 6.20681 6.31344 6.36322 6.37665 6.49149 6.61065 6.71776 6.73904 7.00116 7.23836 7.53816 7.65402 8.21426 8.24058 9.34661 9.87509 10.22281 11.27000 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.002983 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.753281 B = 9385.369241 C =11396.895799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.170 3.830 6 H 0.068 0.932 7 N -0.713 5.713 8 C -0.252 4.252 9 H 0.074 0.926 10 C -0.006 4.006 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.059 3.941 17 N -0.600 5.600 18 C 0.572 3.428 19 O -0.545 6.545 20 C -0.100 4.100 21 C -0.130 4.130 22 C -0.096 4.096 23 C -0.119 4.119 24 C 0.122 3.878 25 N -0.394 5.394 26 C -0.013 4.013 27 C -0.194 4.194 28 C -0.193 4.193 29 C -0.016 4.016 30 C -0.084 4.084 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.388 0.612 37 H 0.257 0.743 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.177 0.823 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.165 0.835 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.164 0.836 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 5.269 -15.862 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.058 3.942 6 H 0.086 0.914 7 N -0.353 5.353 8 C -0.383 4.383 9 H 0.092 0.908 10 C -0.203 4.203 11 N -0.574 5.574 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.066 4.066 17 N -0.333 5.333 18 C 0.362 3.638 19 O -0.425 6.425 20 C -0.104 4.104 21 C -0.147 4.147 22 C -0.115 4.115 23 C -0.139 4.139 24 C 0.031 3.969 25 N -0.065 5.065 26 C -0.140 4.140 27 C -0.218 4.218 28 C -0.217 4.217 29 C -0.143 4.143 30 C -0.104 4.104 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.193 0.807 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.183 0.817 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.182 0.818 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.639 5.646 -15.767 18.015 hybrid contribution 0.869 -0.716 0.033 1.126 sum -5.770 4.930 -15.734 17.469 Atomic orbital electron populations 1.22147 0.94246 1.02583 1.03253 1.21946 0.94863 0.95413 0.84311 0.90622 1.23190 0.97617 1.00410 0.96266 1.21244 0.93343 0.91262 0.88388 0.91400 1.42404 1.06061 1.23732 1.63067 1.19279 0.83806 1.05402 1.29836 0.90822 1.24782 0.97780 0.97542 1.00231 1.69667 1.32598 1.15155 1.39968 0.86133 0.84674 0.78004 0.77419 1.20395 1.21732 1.21725 1.23823 0.85235 0.97025 1.00534 1.48470 1.28213 1.47947 1.08653 1.17801 0.82718 0.82179 0.81130 1.90686 1.28686 1.42298 1.80790 1.19731 0.96687 0.99747 0.94243 1.23162 0.95172 0.94266 1.02130 1.21111 1.00117 0.98162 0.92060 1.21030 0.93979 0.99992 0.98855 1.17707 0.94239 0.99812 0.85180 1.41643 1.19127 1.35495 1.10280 1.21985 0.90004 1.03818 0.98176 1.20980 1.01884 1.03478 0.95454 1.20976 0.96885 1.04209 0.99634 1.21893 1.02790 1.01693 0.87945 1.20798 1.00592 0.97745 0.91308 0.92712 0.92027 0.89921 0.90329 0.89936 0.77773 0.93290 0.89571 0.91206 0.80679 0.84203 0.85042 0.81723 0.84222 0.84252 0.81844 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.77 37.16 0.33 -1.89 16 2 C 0.14 1.92 3.75 -66.30 -0.25 1.67 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -1.99 6.12 -24.46 -0.15 -2.14 16 5 C 0.17 2.91 3.59 -66.09 -0.24 2.67 16 6 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 7 N -0.71 -15.74 5.18 -51.65 -0.27 -16.01 16 8 C -0.25 -6.26 9.98 -15.06 -0.15 -6.41 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -26.07 13.06 55.49 0.72 -25.34 16 12 Si 0.91 20.75 29.55 -169.99 -5.02 15.73 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.06 0.92 4.62 -3.07 -0.01 0.90 16 17 N -0.60 -9.08 3.24 -167.54 -0.54 -9.63 16 18 C 0.57 9.14 7.53 -12.33 -0.09 9.05 16 19 O -0.54 -9.66 14.18 5.32 0.08 -9.59 16 20 C -0.10 -1.45 5.87 -104.99 -0.62 -2.06 16 21 C -0.13 -1.71 8.59 -39.16 -0.34 -2.05 16 22 C -0.10 -1.10 10.02 -39.67 -0.40 -1.50 16 23 C -0.12 -1.31 9.45 -39.33 -0.37 -1.69 16 24 C 0.12 1.53 6.61 -83.64 -0.55 0.98 16 25 N -0.39 -4.72 2.97 -60.97 -0.18 -4.90 16 26 C -0.01 -0.15 10.73 -16.64 -0.18 -0.32 16 27 C -0.19 -2.04 10.86 -39.76 -0.43 -2.47 16 28 C -0.19 -1.96 10.86 -39.76 -0.43 -2.39 16 29 C -0.02 -0.17 10.73 -16.64 -0.18 -0.35 16 30 C -0.08 -1.14 8.99 -39.00 -0.35 -1.49 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.24 5.93 -51.93 -0.31 0.93 16 34 H 0.08 1.22 7.93 -51.93 -0.41 0.81 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.39 9.29 7.71 -40.82 -0.31 8.97 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.09 1.45 6.56 -51.93 -0.34 1.11 16 39 H 0.07 1.01 6.80 -51.93 -0.35 0.65 16 40 H 0.18 2.38 2.77 -57.10 -0.16 2.22 16 41 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.13 1.13 6.69 -52.48 -0.35 0.78 16 43 H 0.17 1.62 7.01 -52.49 -0.37 1.25 16 44 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.16 1.29 7.00 -52.49 -0.37 0.92 16 47 H 0.14 1.86 6.31 -52.48 -0.33 1.53 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -29.80 377.80 -10.26 -40.06 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -6.23 Total: 13.74 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -4.51 Total: -9.76 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.27 Total: -55.88 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.80 -10.26 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989128623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.812 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds