Wall clock time and date at job start Tue Mar 31 2020 22:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.41121 * 2 1 4 4 C 1.55124 * 110.34542 * 122.44309 * 2 1 3 5 5 C 1.55164 * 101.48329 * 156.05755 * 4 2 1 6 6 H 1.09000 * 110.86930 * 82.77527 * 5 4 2 7 7 N 1.46503 * 110.71799 * 205.97136 * 5 4 2 8 8 C 1.36939 * 119.99647 * 199.97921 * 7 5 4 9 9 H 1.08001 * 120.00115 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00167 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99629 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00180 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47413 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47048 * 120.00271 * 12 10 8 15 15 H 1.48507 * 109.47129 * 239.99936 * 12 10 8 16 16 C 1.54319 * 102.94235 * 324.33605 * 5 4 2 17 17 N 1.47015 * 107.27517 * 22.19149 * 16 5 4 18 18 C 1.34774 * 125.65090 * 181.02384 * 17 16 5 19 19 O 1.21555 * 120.00269 * 185.34167 * 18 17 16 20 20 C 1.47854 * 119.99914 * 5.33782 * 18 17 16 21 21 C 1.39611 * 120.11353 * 351.85509 * 20 18 17 22 22 C 1.37979 * 119.98757 * 180.02562 * 21 20 18 23 23 C 1.38264 * 120.21351 * 0.02562 * 22 21 20 24 24 C 1.38900 * 120.22994 * 0.02562 * 23 22 21 25 25 N 1.40229 * 119.99444 * 179.97438 * 24 23 22 26 26 C 1.36571 * 125.66839 * 179.69482 * 25 24 23 27 27 C 1.34847 * 108.19952 * 179.83024 * 26 25 24 28 28 C 1.40948 * 107.46715 * 0.42671 * 27 26 25 29 29 C 1.34845 * 107.46864 * 359.73671 * 28 27 26 30 30 C 1.38585 * 120.01178 * 359.97438 * 24 23 22 31 31 H 1.09004 * 109.47122 * 180.84048 * 1 2 3 32 32 H 1.09001 * 109.47062 * 300.83821 * 1 2 3 33 33 H 1.08993 * 109.47543 * 60.83892 * 1 2 3 34 34 H 1.08999 * 111.19315 * 37.95943 * 4 2 1 35 35 H 1.08997 * 110.94307 * 274.05718 * 4 2 1 36 36 H 0.96998 * 120.00118 * 19.97694 * 7 5 4 37 37 H 0.97000 * 120.00092 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.87946 * 262.76869 * 16 5 4 39 39 H 1.09002 * 109.88160 * 141.61315 * 16 5 4 40 40 H 1.08004 * 120.00968 * 0.04604 * 21 20 18 41 41 H 1.08002 * 119.89434 * 180.30006 * 22 21 20 42 42 H 1.08004 * 119.88195 * 179.97438 * 23 22 21 43 43 H 1.07998 * 125.89764 * 359.97438 * 26 25 24 44 44 H 1.08001 * 126.26553 * 180.15601 * 27 26 25 45 45 H 1.08000 * 126.26371 * 179.71298 * 28 27 26 46 46 H 1.08000 * 125.90118 * 180.02562 * 29 28 27 47 47 H 1.08005 * 120.11180 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0694 -0.7803 1.2275 5 6 3.4798 -1.1972 0.7331 6 1 4.1954 -0.3870 0.8727 7 7 3.9322 -2.4098 1.4196 8 6 5.2654 -2.7205 1.4532 9 1 5.9834 -2.0715 0.9740 10 6 5.6942 -3.8692 2.1041 11 7 4.8192 -4.6598 2.6886 12 14 7.5127 -4.2934 2.1493 13 1 8.2824 -3.2515 1.4233 14 1 7.9719 -4.3543 3.5603 15 1 7.7297 -5.6117 1.5009 16 6 3.2525 -1.4723 -0.7683 17 7 2.0431 -0.7383 -1.1684 18 6 1.4972 -0.7362 -2.4006 19 8 0.5494 -0.0151 -2.6443 20 6 2.0511 -1.6109 -3.4561 21 6 3.2383 -2.3111 -3.2340 22 6 3.7532 -3.1263 -4.2210 23 6 3.0973 -3.2525 -5.4316 24 6 1.9160 -2.5592 -5.6626 25 7 1.2552 -2.6904 -6.8924 26 6 0.0891 -2.0701 -7.2400 27 6 -0.2266 -2.4410 -8.4974 28 6 0.7739 -3.3295 -8.9403 29 6 1.6674 -3.4643 -7.9394 30 6 1.3905 -1.7378 -4.6778 31 1 -0.3633 -1.0276 0.0151 32 1 -0.3633 0.5268 0.8824 33 1 -0.3634 0.5007 -0.8973 34 1 1.4551 -1.6555 1.4390 35 1 2.1373 -0.1327 2.1016 36 1 3.2873 -2.9924 1.8503 37 1 5.1187 -5.4627 3.1431 38 1 3.1091 -2.5404 -0.9318 39 1 4.1081 -1.1188 -1.3437 40 1 3.7536 -2.2149 -2.2897 41 1 4.6692 -3.6710 -4.0458 42 1 3.5053 -3.8917 -6.2006 43 1 -0.4803 -1.3969 -6.6164 44 1 -1.0906 -2.1198 -9.0603 45 1 0.8169 -3.8139 -9.9046 46 1 2.5559 -4.0780 -7.9620 47 1 0.4723 -1.1977 -4.8558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989128623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:42 Heat of formation + Delta-G solvation = 76.146258 kcal Electronic energy + Delta-G solvation = -28849.497312 eV Core-core repulsion = 24999.031490 eV Total energy + Delta-G solvation = -3850.465822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.64752 -41.66007 -39.61713 -38.65799 -35.97865 -34.67280 -33.27168 -33.06943 -32.10039 -30.13802 -29.82034 -29.75285 -27.08573 -25.99166 -25.08092 -24.14968 -22.94630 -21.88967 -21.41069 -20.92883 -20.45845 -19.34992 -19.08273 -17.89619 -17.52193 -16.88312 -16.75102 -16.36316 -16.05249 -15.88664 -15.47082 -15.38425 -15.26632 -14.96164 -14.70971 -14.58517 -14.37195 -14.26524 -13.69822 -13.53734 -13.32287 -13.25647 -13.13090 -13.05616 -12.92932 -12.84767 -12.77566 -12.49354 -12.18393 -12.06304 -11.80576 -11.66662 -11.54459 -11.01356 -10.93573 -10.75269 -10.24945 -9.68815 -9.24892 -9.08049 -9.04150 -7.92097 -5.22190 -0.39747 -0.08134 1.31295 1.52093 1.54141 1.62568 1.67166 1.81526 1.95987 2.02949 2.58840 2.71847 3.21846 3.38587 3.61666 3.69970 3.77034 3.81623 3.86230 4.01681 4.03359 4.12379 4.17416 4.24729 4.27484 4.42281 4.46636 4.52258 4.56516 4.65189 4.70682 4.71334 4.76292 4.81858 4.91800 5.05118 5.10966 5.13098 5.22778 5.26254 5.28952 5.31276 5.32468 5.48019 5.58550 5.59765 5.94276 6.19037 6.28184 6.39257 6.41991 7.00215 7.36660 8.07437 8.31194 9.30936 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.002983 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.753281 B = 9385.369241 C =11396.895799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.164 3.836 6 H 0.076 0.924 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.085 0.915 10 C -0.070 4.070 11 N -0.967 5.967 12 Si 0.966 3.034 13 H -0.262 1.262 14 H -0.300 1.300 15 H -0.297 1.297 16 C 0.074 3.926 17 N -0.600 5.600 18 C 0.568 3.432 19 O -0.569 6.569 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.093 4.093 23 C -0.111 4.111 24 C 0.119 3.881 25 N -0.404 5.404 26 C -0.039 4.039 27 C -0.198 4.198 28 C -0.201 4.201 29 C -0.025 4.025 30 C -0.095 4.095 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.376 0.624 37 H 0.250 0.750 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.171 0.829 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.157 0.843 45 H 0.162 0.838 46 H 0.190 0.810 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 5.550 -17.501 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.109 0.891 4 C -0.163 4.163 5 C 0.053 3.947 6 H 0.093 0.907 7 N -0.363 5.363 8 C -0.369 4.369 9 H 0.103 0.897 10 C -0.262 4.262 11 N -0.618 5.618 12 Si 0.796 3.204 13 H -0.186 1.186 14 H -0.228 1.228 15 H -0.224 1.224 16 C -0.052 4.052 17 N -0.332 5.332 18 C 0.359 3.641 19 O -0.450 6.450 20 C -0.122 4.122 21 C -0.155 4.155 22 C -0.111 4.111 23 C -0.130 4.130 24 C 0.027 3.973 25 N -0.077 5.077 26 C -0.165 4.165 27 C -0.221 4.221 28 C -0.225 4.225 29 C -0.151 4.151 30 C -0.116 4.116 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.208 0.792 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.188 0.812 41 H 0.182 0.818 42 H 0.180 0.820 43 H 0.185 0.815 44 H 0.174 0.826 45 H 0.179 0.821 46 H 0.207 0.793 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.541 5.981 -17.445 19.256 hybrid contribution 0.445 -0.741 0.429 0.965 sum -5.096 5.240 -17.016 18.520 Atomic orbital electron populations 1.22063 0.93798 1.01938 1.03640 1.22071 0.95238 0.95855 0.83449 0.89137 1.23102 0.95722 1.00357 0.97167 1.21441 0.94785 0.89531 0.88927 0.90653 1.42536 1.05065 1.25014 1.63636 1.19674 0.85128 1.04584 1.27547 0.89728 1.25492 1.01194 0.98231 1.01306 1.69814 1.34187 1.15748 1.42027 0.85181 0.80827 0.77688 0.76690 1.18569 1.22806 1.22401 1.23523 0.85941 0.96378 0.99313 1.48494 1.28052 1.47843 1.08852 1.18096 0.82413 0.82090 0.81530 1.90668 1.29725 1.43398 1.81243 1.19677 0.97637 1.00602 0.94240 1.23118 0.94909 0.94911 1.02545 1.21397 1.00729 0.97414 0.91589 1.21368 0.93002 0.99330 0.99309 1.17848 0.94703 0.99544 0.85240 1.41777 1.19385 1.36111 1.10390 1.22260 0.90545 1.04734 0.98981 1.21331 1.02473 1.03130 0.95212 1.21353 0.96529 1.04035 1.00557 1.22450 1.03700 1.01480 0.87434 1.20791 1.00661 0.98503 0.91633 0.93903 0.89599 0.91439 0.91406 0.88187 0.79185 0.94143 0.90956 0.89776 0.81244 0.81798 0.82032 0.81458 0.82571 0.82078 0.79262 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 8.77 71.98 0.63 -3.48 16 2 C 0.14 3.66 3.75 45.54 0.17 3.83 16 3 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.12 -3.51 6.12 32.06 0.20 -3.31 16 5 C 0.16 5.42 3.59 46.18 0.17 5.58 16 6 H 0.08 2.42 8.12 -2.39 -0.02 2.40 16 7 N -0.72 -31.70 5.18 -317.32 -1.64 -33.34 16 8 C -0.24 -11.59 9.98 84.03 0.84 -10.75 16 9 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 10 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 11 N -0.97 -55.30 13.06 21.65 0.28 -55.02 16 12 Si 0.97 42.51 29.55 68.60 2.03 44.54 16 13 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 14 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 15 H -0.30 -13.21 7.11 99.48 0.71 -12.51 16 16 C 0.07 2.22 4.62 86.73 0.40 2.62 16 17 N -0.60 -17.90 3.24 -802.27 -2.60 -20.50 16 18 C 0.57 18.30 7.53 86.79 0.65 18.95 16 19 O -0.57 -20.56 14.18 -3.89 -0.06 -20.62 16 20 C -0.12 -3.41 5.87 -20.10 -0.12 -3.53 16 21 C -0.14 -3.51 8.59 22.54 0.19 -3.31 16 22 C -0.09 -1.93 10.02 22.21 0.22 -1.71 16 23 C -0.11 -2.18 9.45 22.43 0.21 -1.97 16 24 C 0.12 2.84 6.61 38.04 0.25 3.10 16 25 N -0.40 -9.20 2.97 -346.79 -1.03 -10.24 16 26 C -0.04 -0.87 10.73 83.18 0.89 0.02 16 27 C -0.20 -3.91 10.86 22.15 0.24 -3.67 16 28 C -0.20 -3.66 10.86 22.15 0.24 -3.42 16 29 C -0.02 -0.46 10.73 83.18 0.89 0.43 16 30 C -0.10 -2.60 8.99 22.65 0.20 -2.40 16 31 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 2.02 5.93 -2.39 -0.01 2.00 16 34 H 0.07 2.08 7.93 -2.39 -0.02 2.06 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.38 18.22 7.71 -92.71 -0.72 17.50 16 37 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 38 H 0.07 2.43 6.56 -2.39 -0.02 2.41 16 39 H 0.08 2.31 6.80 -2.39 -0.02 2.30 16 40 H 0.17 4.46 2.77 -7.24 -0.02 4.44 16 41 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.16 2.15 6.69 -2.91 -0.02 2.13 16 43 H 0.17 3.42 7.01 -2.91 -0.02 3.40 16 44 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 45 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.19 2.32 7.00 -2.91 -0.02 2.30 16 47 H 0.13 3.70 6.31 -2.91 -0.02 3.69 16 Total: -1.00 -64.32 377.80 4.02 -60.30 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: 0.28 Total: 41.09 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 6.76 Total: -6.21 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -4.99 Total: -119.10 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.06 Total: -20.62 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -64.32 4.02 -60.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989128623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.448 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds