Wall clock time and date at job start Tue Mar 31 2020 22:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.86829 * 2 1 4 4 C 1.54318 * 109.88358 * 121.01726 * 2 1 3 5 5 C 1.55156 * 102.94129 * 97.22806 * 4 2 1 6 6 H 1.08998 * 111.00502 * 277.42117 * 5 4 2 7 7 N 1.46504 * 111.00264 * 153.57430 * 5 4 2 8 8 C 1.36936 * 119.99754 * 154.99796 * 7 5 4 9 9 H 1.08001 * 120.00294 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00058 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00146 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00162 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47222 * 89.99784 * 12 10 8 14 14 H 1.48492 * 109.47402 * 210.00407 * 12 10 8 15 15 H 1.48507 * 109.46739 * 330.00302 * 12 10 8 16 16 C 1.54906 * 101.58096 * 35.50373 * 5 4 2 17 17 N 1.47022 * 109.88224 * 238.83074 * 2 1 3 18 18 C 1.34773 * 125.65159 * 59.54097 * 17 2 1 19 19 O 1.21551 * 120.00049 * 354.22722 * 18 17 2 20 20 C 1.47854 * 120.00074 * 174.22471 * 18 17 2 21 21 C 1.39622 * 120.11352 * 155.57340 * 20 18 17 22 22 C 1.37966 * 119.98444 * 179.97438 * 21 20 18 23 23 C 1.38263 * 120.22143 * 0.02562 * 22 21 20 24 24 C 1.38908 * 120.22795 * 0.02562 * 23 22 21 25 25 N 1.40230 * 119.99449 * 179.97438 * 24 23 22 26 26 C 1.36559 * 125.66505 * 179.69490 * 25 24 23 27 27 C 1.34852 * 108.20107 * 179.83039 * 26 25 24 28 28 C 1.40940 * 107.46235 * 0.42566 * 27 26 25 29 29 C 1.34851 * 107.47098 * 359.73261 * 28 27 26 30 30 C 1.38590 * 120.00887 * 359.70232 * 24 23 22 31 31 H 1.09003 * 109.47584 * 298.97654 * 1 2 3 32 32 H 1.09003 * 109.47506 * 58.98464 * 1 2 3 33 33 H 1.09002 * 109.46768 * 178.98233 * 1 2 3 34 34 H 1.08999 * 110.72127 * 338.86476 * 4 2 1 35 35 H 1.09000 * 110.87055 * 215.66180 * 4 2 1 36 36 H 0.96995 * 120.00170 * 335.00588 * 7 5 4 37 37 H 0.97002 * 119.99967 * 179.97438 * 11 10 8 38 38 H 1.08999 * 110.37071 * 81.82820 * 16 5 4 39 39 H 1.09002 * 110.36254 * 204.15587 * 16 5 4 40 40 H 1.08000 * 120.00394 * 0.02562 * 21 20 18 41 41 H 1.08007 * 119.88981 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.88814 * 180.02562 * 23 22 21 43 43 H 1.08006 * 125.90332 * 359.97438 * 26 25 24 44 44 H 1.07996 * 126.26727 * 180.14002 * 27 26 25 45 45 H 1.08005 * 126.26522 * 179.71500 * 28 27 26 46 46 H 1.07996 * 125.90366 * 179.97438 * 29 28 27 47 47 H 1.07992 * 120.10867 * 180.27411 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 6 2.3519 -2.1685 0.6952 6 1 1.4453 -2.7727 0.6641 7 7 3.3939 -2.8291 1.4854 8 6 3.4570 -4.1963 1.5284 9 1 2.7386 -4.7876 0.9802 10 6 4.4439 -4.8223 2.2775 11 7 4.5049 -6.1364 2.3185 12 14 5.6853 -3.7996 3.2275 13 1 5.1659 -3.5333 4.5930 14 1 6.9686 -4.5408 3.3218 15 1 5.9083 -2.5116 2.5227 16 6 2.8569 -1.8506 -0.7343 17 7 2.0300 -0.7156 -1.1830 18 6 1.7751 -0.3879 -2.4652 19 8 0.9939 0.5078 -2.7198 20 6 2.4457 -1.1180 -3.5622 21 6 1.8604 -1.1714 -4.8286 22 6 2.4887 -1.8530 -5.8504 23 6 3.6977 -2.4849 -5.6252 24 6 4.2876 -2.4384 -4.3684 25 7 5.5136 -3.0815 -4.1452 26 6 6.1966 -3.1052 -2.9630 27 6 7.3242 -3.8229 -3.1423 28 6 7.3443 -4.2504 -4.4851 29 6 6.2255 -3.7833 -5.0755 30 6 3.6674 -1.7517 -3.3366 31 1 -0.3634 0.4978 0.8990 32 1 -0.3634 0.5295 -0.8807 33 1 -0.3633 -1.0275 -0.0183 34 1 1.2918 -0.7863 2.0211 35 1 2.9651 -0.2821 1.6214 36 1 4.0388 -2.2980 1.9781 37 1 5.1948 -6.5738 2.8416 38 1 3.9092 -1.5674 -0.7108 39 1 2.7089 -2.7098 -1.3886 40 1 0.9163 -0.6787 -5.0085 41 1 2.0343 -1.8937 -6.8294 42 1 4.1851 -3.0166 -6.4290 43 1 5.8863 -2.6328 -2.0426 44 1 8.0764 -4.0281 -2.3951 45 1 8.1149 -4.8434 -4.9553 46 1 5.9418 -3.9372 -6.1062 47 1 4.1268 -1.7108 -2.3601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989128624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:47 Heat of formation + Delta-G solvation = 79.329685 kcal Electronic energy + Delta-G solvation = -29659.877939 eV Core-core repulsion = 25809.550161 eV Total energy + Delta-G solvation = -3850.327778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.66253 -40.42977 -38.68019 -37.43655 -34.42605 -33.25229 -32.75326 -31.60242 -30.62919 -28.99790 -28.86670 -28.77833 -25.82008 -24.61251 -23.47452 -23.17281 -21.91578 -20.73461 -20.14370 -19.93043 -19.32361 -18.01384 -17.82160 -16.87159 -16.33809 -15.83418 -15.72595 -15.12487 -14.96041 -14.60085 -14.36246 -14.06375 -13.80616 -13.67626 -13.52742 -13.40217 -13.18540 -12.82590 -12.74972 -12.59208 -12.29412 -12.17775 -12.07311 -11.99926 -11.85249 -11.59625 -11.52821 -11.13809 -10.88708 -10.73118 -10.43330 -10.14931 -9.97979 -9.86216 -9.70935 -9.28155 -9.10180 -8.56707 -8.21005 -8.07093 -7.47176 -5.89690 -3.28942 0.59070 0.87486 2.30856 2.74319 2.86558 3.00048 3.06997 3.27241 3.30696 3.37837 3.67257 4.26441 4.46487 4.47850 4.65868 4.86325 4.88538 4.91923 4.98407 5.02590 5.07604 5.17930 5.21062 5.37388 5.41590 5.46090 5.47293 5.56853 5.64640 5.68189 5.72315 5.79403 5.86615 5.91494 5.97003 6.01904 6.07641 6.13999 6.26116 6.29323 6.33234 6.36404 6.43663 6.50107 6.62744 6.94364 7.19405 7.40942 7.56956 7.83078 8.15278 8.28175 9.04094 9.75956 9.93224 11.27676 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007500 B = 0.005296 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.204982 B = 5285.737302 C = 8414.808889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.072 0.928 4 C -0.143 4.143 5 C 0.179 3.821 6 H 0.078 0.922 7 N -0.734 5.734 8 C -0.257 4.257 9 H 0.092 0.908 10 C 0.014 3.986 11 N -0.925 5.925 12 Si 0.882 3.118 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.067 3.933 17 N -0.603 5.603 18 C 0.573 3.427 19 O -0.541 6.541 20 C -0.098 4.098 21 C -0.079 4.079 22 C -0.100 4.100 23 C -0.122 4.122 24 C 0.138 3.862 25 N -0.398 5.398 26 C -0.005 4.005 27 C -0.187 4.187 28 C -0.187 4.187 29 C -0.022 4.022 30 C -0.115 4.115 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.365 0.635 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.167 0.833 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.163 0.837 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 9.977 -14.105 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.091 0.909 4 C -0.181 4.181 5 C 0.067 3.933 6 H 0.096 0.904 7 N -0.375 5.375 8 C -0.387 4.387 9 H 0.110 0.890 10 C -0.183 4.183 11 N -0.572 5.572 12 Si 0.712 3.288 13 H -0.209 1.209 14 H -0.215 1.215 15 H -0.203 1.203 16 C -0.058 4.058 17 N -0.336 5.336 18 C 0.362 3.638 19 O -0.419 6.419 20 C -0.101 4.101 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.142 4.142 24 C 0.046 3.954 25 N -0.070 5.070 26 C -0.131 4.131 27 C -0.211 4.211 28 C -0.211 4.211 29 C -0.148 4.148 30 C -0.135 4.135 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.198 0.802 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.184 0.816 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.180 0.820 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.004 10.299 -14.327 17.758 hybrid contribution 1.187 0.394 0.718 1.442 sum -0.817 10.693 -13.609 17.327 Atomic orbital electron populations 1.22162 0.94633 1.02603 1.02652 1.21527 0.94818 0.95776 0.84227 0.90947 1.23088 1.01866 0.97008 0.96184 1.21266 0.92774 0.91280 0.87960 0.90379 1.42663 1.33821 1.04501 1.56523 1.19044 1.12917 0.80411 1.26298 0.89045 1.24667 0.98652 0.95255 0.99723 1.69693 1.35972 1.06966 1.44527 0.86608 0.81911 0.79694 0.80583 1.20936 1.21539 1.20274 1.23733 0.94338 0.87562 1.00187 1.48477 1.50100 1.30527 1.04479 1.17836 0.81429 0.83108 0.81387 1.90736 1.35858 1.31963 1.83388 1.19726 0.95397 1.00239 0.94750 1.21248 1.00237 0.97370 0.91015 1.20941 0.94401 0.97025 0.99494 1.20991 0.96626 1.01377 0.95164 1.17766 0.86163 0.96666 0.94829 1.41621 1.15065 1.39885 1.10457 1.22026 0.94834 1.06546 0.89728 1.21034 0.99265 1.03534 0.97230 1.20989 0.99092 1.05951 0.95113 1.21805 0.94917 1.02665 0.95450 1.21609 0.95513 0.96805 0.99603 0.91869 0.91127 0.92271 0.89647 0.90726 0.80200 0.92818 0.91363 0.90380 0.84399 0.84495 0.84929 0.81611 0.84019 0.84278 0.82011 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.04 37.16 0.34 -1.74 16 2 C 0.14 1.89 3.53 -66.96 -0.24 1.65 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.14 -1.97 6.14 -24.90 -0.15 -2.12 16 5 C 0.18 3.06 3.71 -65.78 -0.24 2.82 16 6 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 7 N -0.73 -15.50 5.05 -51.35 -0.26 -15.76 16 8 C -0.26 -6.68 10.44 -15.06 -0.16 -6.84 16 9 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 11 N -0.93 -27.69 13.97 55.49 0.78 -26.92 16 12 Si 0.88 20.69 27.74 -169.99 -4.71 15.97 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.00 6.52 56.52 0.37 -5.63 16 16 C 0.07 1.05 4.68 -2.53 -0.01 1.04 16 17 N -0.60 -8.90 3.08 -164.12 -0.51 -9.41 16 18 C 0.57 8.86 7.46 -12.33 -0.09 8.77 16 19 O -0.54 -9.39 15.32 5.32 0.08 -9.31 16 20 C -0.10 -1.35 5.67 -104.99 -0.59 -1.94 16 21 C -0.08 -0.93 9.59 -39.16 -0.38 -1.31 16 22 C -0.10 -0.97 10.02 -39.67 -0.40 -1.36 16 23 C -0.12 -1.28 9.45 -39.32 -0.37 -1.66 16 24 C 0.14 1.81 6.61 -83.64 -0.55 1.25 16 25 N -0.40 -5.47 2.97 -60.96 -0.18 -5.65 16 26 C -0.01 -0.08 10.73 -16.65 -0.18 -0.25 16 27 C -0.19 -2.67 10.86 -39.76 -0.43 -3.10 16 28 C -0.19 -2.38 10.86 -39.76 -0.43 -2.81 16 29 C -0.02 -0.27 10.73 -16.65 -0.18 -0.45 16 30 C -0.12 -1.58 7.48 -38.99 -0.29 -1.87 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.00 6.61 -51.93 -0.34 0.65 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.09 7.83 -51.93 -0.41 0.69 16 35 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 36 H 0.36 7.55 5.62 -40.82 -0.23 7.32 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 1.06 6.83 -51.93 -0.35 0.70 16 39 H 0.08 1.29 6.84 -51.93 -0.36 0.93 16 40 H 0.14 1.51 7.84 -52.49 -0.41 1.10 16 41 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.13 1.08 6.69 -52.48 -0.35 0.73 16 43 H 0.17 2.36 7.01 -52.48 -0.37 1.99 16 44 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 46 H 0.16 1.44 7.00 -52.49 -0.37 1.07 16 47 H 0.15 2.10 3.25 -52.49 -0.17 1.93 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -31.49 377.94 -9.89 -41.38 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -6.32 Total: 13.63 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -4.46 Total: -9.63 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.17 Total: -57.74 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.71 Total: 15.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.49 -9.89 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989128624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.705 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds