Wall clock time and date at job start Tue Mar 31 2020 22:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.86829 * 2 1 4 4 C 1.54318 * 109.88358 * 121.01726 * 2 1 3 5 5 C 1.55156 * 102.94129 * 97.22806 * 4 2 1 6 6 H 1.08998 * 111.00502 * 277.42117 * 5 4 2 7 7 N 1.46504 * 111.00264 * 153.57430 * 5 4 2 8 8 C 1.36936 * 119.99754 * 154.99796 * 7 5 4 9 9 H 1.08001 * 120.00294 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00058 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00146 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00162 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47222 * 89.99784 * 12 10 8 14 14 H 1.48492 * 109.47402 * 210.00407 * 12 10 8 15 15 H 1.48507 * 109.46739 * 330.00302 * 12 10 8 16 16 C 1.54906 * 101.58096 * 35.50373 * 5 4 2 17 17 N 1.47022 * 109.88224 * 238.83074 * 2 1 3 18 18 C 1.34773 * 125.65159 * 59.54097 * 17 2 1 19 19 O 1.21551 * 120.00049 * 354.22722 * 18 17 2 20 20 C 1.47854 * 120.00074 * 174.22471 * 18 17 2 21 21 C 1.39622 * 120.11352 * 155.57340 * 20 18 17 22 22 C 1.37966 * 119.98444 * 179.97438 * 21 20 18 23 23 C 1.38263 * 120.22143 * 0.02562 * 22 21 20 24 24 C 1.38908 * 120.22795 * 0.02562 * 23 22 21 25 25 N 1.40230 * 119.99449 * 179.97438 * 24 23 22 26 26 C 1.36559 * 125.66505 * 179.69490 * 25 24 23 27 27 C 1.34852 * 108.20107 * 179.83039 * 26 25 24 28 28 C 1.40940 * 107.46235 * 0.42566 * 27 26 25 29 29 C 1.34851 * 107.47098 * 359.73261 * 28 27 26 30 30 C 1.38590 * 120.00887 * 359.70232 * 24 23 22 31 31 H 1.09003 * 109.47584 * 298.97654 * 1 2 3 32 32 H 1.09003 * 109.47506 * 58.98464 * 1 2 3 33 33 H 1.09002 * 109.46768 * 178.98233 * 1 2 3 34 34 H 1.08999 * 110.72127 * 338.86476 * 4 2 1 35 35 H 1.09000 * 110.87055 * 215.66180 * 4 2 1 36 36 H 0.96995 * 120.00170 * 335.00588 * 7 5 4 37 37 H 0.97002 * 119.99967 * 179.97438 * 11 10 8 38 38 H 1.08999 * 110.37071 * 81.82820 * 16 5 4 39 39 H 1.09002 * 110.36254 * 204.15587 * 16 5 4 40 40 H 1.08000 * 120.00394 * 0.02562 * 21 20 18 41 41 H 1.08007 * 119.88981 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.88814 * 180.02562 * 23 22 21 43 43 H 1.08006 * 125.90332 * 359.97438 * 26 25 24 44 44 H 1.07996 * 126.26727 * 180.14002 * 27 26 25 45 45 H 1.08005 * 126.26522 * 179.71500 * 28 27 26 46 46 H 1.07996 * 125.90366 * 179.97438 * 29 28 27 47 47 H 1.07992 * 120.10867 * 180.27411 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 6 2.3519 -2.1685 0.6952 6 1 1.4453 -2.7727 0.6641 7 7 3.3939 -2.8291 1.4854 8 6 3.4570 -4.1963 1.5284 9 1 2.7386 -4.7876 0.9802 10 6 4.4439 -4.8223 2.2775 11 7 4.5049 -6.1364 2.3185 12 14 5.6853 -3.7996 3.2275 13 1 5.1659 -3.5333 4.5930 14 1 6.9686 -4.5408 3.3218 15 1 5.9083 -2.5116 2.5227 16 6 2.8569 -1.8506 -0.7343 17 7 2.0300 -0.7156 -1.1830 18 6 1.7751 -0.3879 -2.4652 19 8 0.9939 0.5078 -2.7198 20 6 2.4457 -1.1180 -3.5622 21 6 1.8604 -1.1714 -4.8286 22 6 2.4887 -1.8530 -5.8504 23 6 3.6977 -2.4849 -5.6252 24 6 4.2876 -2.4384 -4.3684 25 7 5.5136 -3.0815 -4.1452 26 6 6.1966 -3.1052 -2.9630 27 6 7.3242 -3.8229 -3.1423 28 6 7.3443 -4.2504 -4.4851 29 6 6.2255 -3.7833 -5.0755 30 6 3.6674 -1.7517 -3.3366 31 1 -0.3634 0.4978 0.8990 32 1 -0.3634 0.5295 -0.8807 33 1 -0.3633 -1.0275 -0.0183 34 1 1.2918 -0.7863 2.0211 35 1 2.9651 -0.2821 1.6214 36 1 4.0388 -2.2980 1.9781 37 1 5.1948 -6.5738 2.8416 38 1 3.9092 -1.5674 -0.7108 39 1 2.7089 -2.7098 -1.3886 40 1 0.9163 -0.6787 -5.0085 41 1 2.0343 -1.8937 -6.8294 42 1 4.1851 -3.0166 -6.4290 43 1 5.8863 -2.6328 -2.0426 44 1 8.0764 -4.0281 -2.3951 45 1 8.1149 -4.8434 -4.9553 46 1 5.9418 -3.9372 -6.1062 47 1 4.1268 -1.7108 -2.3601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989128624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:46 Heat of formation + Delta-G solvation = 62.393219 kcal Electronic energy + Delta-G solvation = -29660.612360 eV Core-core repulsion = 25809.550161 eV Total energy + Delta-G solvation = -3851.062198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.65298 -41.59879 -39.71568 -38.69703 -36.14463 -34.24163 -33.85204 -33.44430 -31.66093 -30.50233 -29.88532 -29.78025 -26.99504 -25.94463 -25.00355 -24.16721 -23.08691 -22.10777 -21.20561 -20.98425 -20.42892 -19.71275 -19.08026 -18.04889 -17.26506 -17.18990 -16.88003 -16.40793 -16.04933 -15.95492 -15.56662 -15.45358 -15.00969 -14.83535 -14.72518 -14.57675 -14.42950 -14.34376 -14.00184 -13.65234 -13.44908 -13.26465 -13.19785 -13.16025 -13.13034 -12.86489 -12.74687 -12.55144 -12.29877 -12.09092 -11.96334 -11.84368 -11.51626 -11.17923 -10.95237 -10.90035 -10.19539 -9.83280 -9.36282 -9.23323 -9.05322 -8.02040 -5.38542 -0.36571 -0.07217 1.31744 1.39887 1.43208 1.50147 1.70506 1.76371 1.89564 2.03675 2.48719 2.70168 3.12172 3.26895 3.48714 3.61504 3.69648 3.80098 3.86809 4.00273 4.01348 4.03516 4.11629 4.20872 4.26318 4.35413 4.39355 4.43087 4.54599 4.62289 4.64961 4.68384 4.74165 4.82521 4.93403 4.96657 5.05134 5.13839 5.16261 5.20690 5.28292 5.31225 5.34871 5.42706 5.59987 5.75737 5.93769 6.17401 6.20243 6.34449 6.44432 6.94753 7.05991 7.77915 7.98119 9.18776 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007500 B = 0.005296 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.204982 B = 5285.737302 C = 8414.808889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 H 0.083 0.917 4 C -0.128 4.128 5 C 0.170 3.830 6 H 0.064 0.936 7 N -0.734 5.734 8 C -0.235 4.235 9 H 0.056 0.944 10 C -0.053 4.053 11 N -0.979 5.979 12 Si 0.950 3.050 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.247 1.247 16 C 0.085 3.915 17 N -0.603 5.603 18 C 0.571 3.429 19 O -0.563 6.563 20 C -0.119 4.119 21 C -0.082 4.082 22 C -0.086 4.086 23 C -0.112 4.112 24 C 0.117 3.883 25 N -0.403 5.403 26 C -0.036 4.036 27 C -0.203 4.203 28 C -0.202 4.202 29 C -0.017 4.017 30 C -0.127 4.127 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.371 0.629 37 H 0.258 0.742 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.145 0.855 41 H 0.179 0.821 42 H 0.165 0.835 43 H 0.158 0.842 44 H 0.143 0.857 45 H 0.162 0.838 46 H 0.200 0.800 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 11.738 -15.898 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 H 0.101 0.899 4 C -0.167 4.167 5 C 0.060 3.940 6 H 0.082 0.918 7 N -0.376 5.376 8 C -0.366 4.366 9 H 0.074 0.926 10 C -0.245 4.245 11 N -0.629 5.629 12 Si 0.777 3.223 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.171 1.171 16 C -0.041 4.041 17 N -0.335 5.335 18 C 0.361 3.639 19 O -0.444 6.444 20 C -0.123 4.123 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.131 4.131 24 C 0.025 3.975 25 N -0.075 5.075 26 C -0.162 4.162 27 C -0.228 4.228 28 C -0.225 4.225 29 C -0.143 4.143 30 C -0.147 4.147 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.205 0.795 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.163 0.837 41 H 0.196 0.804 42 H 0.182 0.818 43 H 0.175 0.825 44 H 0.161 0.839 45 H 0.179 0.821 46 H 0.217 0.783 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.022 12.128 -16.138 20.288 hybrid contribution 1.067 -0.165 1.143 1.572 sum -0.954 11.963 -14.995 19.206 Atomic orbital electron populations 1.22104 0.93904 1.02117 1.03223 1.21673 0.95410 0.96077 0.83464 0.89873 1.23018 1.02977 0.94096 0.96589 1.21392 0.91150 0.92878 0.88582 0.91812 1.42536 1.35015 1.02712 1.57368 1.18941 1.11120 0.82405 1.24138 0.92598 1.25437 1.01226 0.96269 1.01618 1.69879 1.37294 1.09203 1.46501 0.85503 0.78472 0.79066 0.79268 1.20431 1.22700 1.17111 1.23355 0.94512 0.87560 0.98670 1.48487 1.49887 1.30162 1.04960 1.18141 0.81094 0.82870 0.81761 1.90714 1.36983 1.32975 1.83684 1.19720 0.95847 1.01445 0.95264 1.21493 1.00547 0.97415 0.90676 1.21376 0.93580 0.94937 1.00476 1.21414 0.96556 1.00476 0.94670 1.18030 0.86322 0.97254 0.95861 1.41745 1.15335 1.40067 1.10332 1.22065 0.95808 1.07906 0.90435 1.21289 0.99268 1.03721 0.98474 1.21320 1.00214 1.06567 0.94435 1.22460 0.94174 1.01030 0.96627 1.21500 0.95837 0.97761 0.99621 0.89367 0.92534 0.93158 0.88049 0.89505 0.79509 0.93332 0.91129 0.91869 0.83738 0.80392 0.81786 0.82489 0.83926 0.82073 0.78296 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.04 71.98 0.65 -3.11 16 2 C 0.14 3.51 3.53 45.34 0.16 3.67 16 3 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.13 -3.30 6.14 31.78 0.20 -3.11 16 5 C 0.17 5.81 3.71 46.38 0.17 5.98 16 6 H 0.06 2.36 8.09 -2.39 -0.02 2.34 16 7 N -0.73 -30.85 5.05 -316.38 -1.60 -32.45 16 8 C -0.24 -12.55 10.44 84.03 0.88 -11.67 16 9 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 10 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 11 N -0.98 -60.81 13.97 21.65 0.30 -60.51 16 12 Si 0.95 42.97 27.74 68.60 1.90 44.87 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 14 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 15 H -0.25 -9.81 6.52 99.48 0.65 -9.16 16 16 C 0.08 2.69 4.68 86.85 0.41 3.10 16 17 N -0.60 -17.70 3.08 -791.44 -2.44 -20.14 16 18 C 0.57 17.64 7.46 86.79 0.65 18.28 16 19 O -0.56 -19.40 15.32 -3.87 -0.06 -19.46 16 20 C -0.12 -3.26 5.67 -20.10 -0.11 -3.37 16 21 C -0.08 -1.78 9.59 22.54 0.22 -1.56 16 22 C -0.09 -1.35 10.02 22.21 0.22 -1.13 16 23 C -0.11 -2.00 9.45 22.44 0.21 -1.78 16 24 C 0.12 2.94 6.61 38.04 0.25 3.20 16 25 N -0.40 -10.80 2.97 -346.79 -1.03 -11.83 16 26 C -0.04 -1.09 10.73 83.18 0.89 -0.19 16 27 C -0.20 -5.90 10.86 22.15 0.24 -5.66 16 28 C -0.20 -4.89 10.86 22.15 0.24 -4.65 16 29 C -0.02 -0.38 10.73 83.18 0.89 0.51 16 30 C -0.13 -3.52 7.48 22.65 0.17 -3.35 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.55 6.61 -2.39 -0.02 1.53 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 2.33 7.83 -2.39 -0.02 2.31 16 35 H 0.09 2.08 8.00 -2.39 -0.02 2.06 16 36 H 0.37 14.76 5.62 -92.71 -0.52 14.23 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.07 2.23 6.83 -2.39 -0.02 2.21 16 39 H 0.06 2.19 6.84 -2.39 -0.02 2.17 16 40 H 0.14 2.91 7.84 -2.91 -0.02 2.89 16 41 H 0.18 1.37 8.06 -2.91 -0.02 1.34 16 42 H 0.16 1.86 6.69 -2.91 -0.02 1.84 16 43 H 0.16 4.82 7.01 -2.91 -0.02 4.80 16 44 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 45 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 46 H 0.20 2.70 7.00 -2.91 -0.02 2.68 16 47 H 0.14 4.02 3.25 -2.91 -0.01 4.01 16 Total: -1.00 -71.21 377.94 4.30 -66.91 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.42 Total: 39.98 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 6.80 Total: -7.38 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -4.76 Total: -124.93 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.06 Total: -19.46 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.90 Total: 44.87 kcal Total: -71.21 4.30 -66.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989128624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.305 kcal (2) G-P(sol) polarization free energy of solvation -71.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds