Wall clock time and date at job start Tue Mar 31 2020 22:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.41164 * 2 1 4 4 C 1.54914 * 110.36830 * 237.70780 * 2 1 3 5 5 C 1.55399 * 101.66397 * 204.23935 * 4 2 1 6 6 H 1.08997 * 110.69169 * 277.04346 * 5 4 2 7 7 N 1.46502 * 110.85064 * 153.70036 * 5 4 2 8 8 C 1.36939 * 119.99602 * 160.08417 * 7 5 4 9 9 H 1.07995 * 120.00251 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99804 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99955 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00178 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46850 * 60.00356 * 12 10 8 14 14 H 1.48495 * 109.47350 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47298 * 300.00477 * 12 10 8 16 16 C 1.54320 * 102.83288 * 35.33426 * 5 4 2 17 17 N 1.47023 * 107.39826 * 337.97631 * 16 5 4 18 18 C 1.34779 * 125.64643 * 178.89721 * 17 16 5 19 19 O 1.21554 * 120.00408 * 174.56488 * 18 17 16 20 20 C 1.47859 * 119.99867 * 354.56002 * 18 17 16 21 21 C 1.39616 * 120.11368 * 8.00544 * 20 18 17 22 22 C 1.37974 * 119.98629 * 179.97438 * 21 20 18 23 23 C 1.38270 * 120.21590 * 0.02562 * 22 21 20 24 24 C 1.38904 * 120.22960 * 0.02562 * 23 22 21 25 25 N 1.40229 * 119.99594 * 179.97438 * 24 23 22 26 26 C 1.36566 * 125.66613 * 179.69542 * 25 24 23 27 27 C 1.34853 * 108.19458 * 179.82600 * 26 25 24 28 28 C 1.40930 * 107.47016 * 0.42253 * 27 26 25 29 29 C 1.34848 * 107.46672 * 359.73569 * 28 27 26 30 30 C 1.38592 * 120.01024 * 359.69804 * 24 23 22 31 31 H 1.08998 * 109.47505 * 299.15869 * 1 2 3 32 32 H 1.09008 * 109.46954 * 59.16049 * 1 2 3 33 33 H 1.08997 * 109.46898 * 179.15312 * 1 2 3 34 34 H 1.09004 * 111.00294 * 322.22516 * 4 2 1 35 35 H 1.08998 * 111.00306 * 86.07508 * 4 2 1 36 36 H 0.96990 * 120.00186 * 340.08157 * 7 5 4 37 37 H 0.97002 * 120.00018 * 179.97438 * 11 10 8 38 38 H 1.08994 * 109.88374 * 218.48308 * 16 5 4 39 39 H 1.08999 * 109.88035 * 97.46948 * 16 5 4 40 40 H 1.07993 * 120.00641 * 359.95079 * 21 20 18 41 41 H 1.07992 * 119.89326 * 180.02562 * 22 21 20 42 42 H 1.08002 * 119.88505 * 180.02562 * 23 22 21 43 43 H 1.08000 * 125.89926 * 359.96756 * 26 25 24 44 44 H 1.08000 * 126.26228 * 180.13987 * 27 26 25 45 45 H 1.07997 * 126.26761 * 179.71305 * 28 27 26 46 46 H 1.08007 * 125.90091 * 179.97438 * 29 28 27 47 47 H 1.07997 * 120.10884 * 180.27346 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0692 -0.7759 -1.2277 5 6 3.4795 -1.2033 -0.7345 6 1 4.1975 -0.3952 -0.8737 7 7 3.9255 -2.4186 -1.4204 8 6 5.2570 -2.7370 -1.4527 9 1 5.9782 -2.0921 -0.9730 10 6 5.6796 -3.8888 -2.1021 11 7 4.8006 -4.6745 -2.6872 12 14 7.4959 -4.3229 -2.1469 13 1 7.9996 -4.4878 -0.7597 14 1 7.6835 -5.5911 -2.8962 15 1 8.2485 -3.2344 -2.8206 16 6 3.2494 -1.4768 0.7667 17 7 2.0431 -0.7384 1.1682 18 6 1.4972 -0.7363 2.4005 19 8 0.5537 -0.0103 2.6461 20 6 2.0460 -1.6171 3.4536 21 6 3.2275 -2.3260 3.2285 22 6 3.7376 -3.1468 4.2133 23 6 3.0819 -3.2710 5.4243 24 6 1.9052 -2.5707 5.6575 25 7 1.2440 -2.7007 6.8873 26 6 0.0883 -2.0648 7.2411 27 6 -0.2356 -2.4460 8.4934 28 6 0.7593 -3.3418 8.9337 29 6 1.6516 -3.4798 7.9321 30 6 1.3875 -1.7392 4.6770 31 1 -0.3634 0.5007 0.8974 32 1 -0.3633 0.5269 -0.8824 33 1 -0.3633 -1.0275 -0.0152 34 1 1.4511 -1.6480 -1.4409 35 1 2.1399 -0.1263 -2.1001 36 1 3.2778 -2.9977 -1.8516 37 1 5.0959 -5.4792 -3.1414 38 1 4.1064 -1.1280 1.3427 39 1 3.1023 -2.5443 0.9307 40 1 3.7420 -2.2321 2.2836 41 1 4.6518 -3.6941 4.0377 42 1 3.4861 -3.9147 6.1916 43 1 -0.4708 -1.3774 6.6237 44 1 -1.0970 -2.1204 9.0576 45 1 0.7999 -3.8284 9.8970 46 1 2.5363 -4.0991 7.9528 47 1 0.4751 -1.1906 4.8583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989128626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:50 Heat of formation + Delta-G solvation = 76.355303 kcal Electronic energy + Delta-G solvation = -28850.737286 eV Core-core repulsion = 25000.280529 eV Total energy + Delta-G solvation = -3850.456757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.64987 -41.66030 -39.61615 -38.65579 -35.97656 -34.67618 -33.26848 -33.07397 -32.10427 -30.13669 -29.82002 -29.75522 -27.08448 -25.99079 -25.08222 -24.15118 -22.94717 -21.89056 -21.41071 -20.92875 -20.45905 -19.35090 -19.08142 -17.89606 -17.52373 -16.88283 -16.75281 -16.36720 -16.04922 -15.88950 -15.47089 -15.37532 -15.26957 -14.96613 -14.71042 -14.58507 -14.37304 -14.26115 -13.69868 -13.53960 -13.32616 -13.25649 -13.12978 -13.05522 -12.92140 -12.82658 -12.72295 -12.49987 -12.25131 -12.10428 -11.79754 -11.65820 -11.55210 -10.99965 -10.93651 -10.74695 -10.25079 -9.68796 -9.24865 -9.08185 -9.04141 -7.91650 -5.21917 -0.39957 -0.08306 1.31196 1.53718 1.54838 1.60770 1.66879 1.81591 1.95842 2.02946 2.59196 2.71657 3.21817 3.38586 3.61510 3.70431 3.76916 3.80896 3.86158 4.01616 4.03204 4.12360 4.17071 4.24716 4.27485 4.42239 4.46645 4.52315 4.56445 4.65151 4.70629 4.71277 4.76160 4.81537 4.91683 5.05062 5.10741 5.12933 5.22701 5.26158 5.28921 5.31186 5.32423 5.47788 5.58099 5.59544 5.94254 6.19019 6.28236 6.39162 6.41884 7.00034 7.36812 8.07709 8.31533 9.30934 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.002986 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.930625 B = 9376.131025 C =11390.507058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 H 0.090 0.910 4 C -0.125 4.125 5 C 0.164 3.836 6 H 0.075 0.925 7 N -0.723 5.723 8 C -0.241 4.241 9 H 0.084 0.916 10 C -0.068 4.068 11 N -0.967 5.967 12 Si 0.967 3.033 13 H -0.273 1.273 14 H -0.303 1.303 15 H -0.280 1.280 16 C 0.073 3.927 17 N -0.600 5.600 18 C 0.568 3.432 19 O -0.568 6.568 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.093 4.093 23 C -0.110 4.110 24 C 0.119 3.881 25 N -0.404 5.404 26 C -0.039 4.039 27 C -0.197 4.197 28 C -0.201 4.201 29 C -0.025 4.025 30 C -0.095 4.095 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.376 0.624 37 H 0.250 0.750 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.171 0.829 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.157 0.843 45 H 0.162 0.838 46 H 0.190 0.810 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 5.464 17.443 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.108 0.892 4 C -0.164 4.164 5 C 0.053 3.947 6 H 0.093 0.907 7 N -0.362 5.362 8 C -0.373 4.373 9 H 0.102 0.898 10 C -0.261 4.261 11 N -0.617 5.617 12 Si 0.796 3.204 13 H -0.199 1.199 14 H -0.230 1.230 15 H -0.206 1.206 16 C -0.052 4.052 17 N -0.332 5.332 18 C 0.359 3.641 19 O -0.450 6.450 20 C -0.122 4.122 21 C -0.155 4.155 22 C -0.111 4.111 23 C -0.130 4.130 24 C 0.027 3.973 25 N -0.077 5.077 26 C -0.165 4.165 27 C -0.221 4.221 28 C -0.225 4.225 29 C -0.151 4.151 30 C -0.116 4.116 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.208 0.792 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.187 0.813 41 H 0.182 0.818 42 H 0.180 0.820 43 H 0.185 0.815 44 H 0.174 0.826 45 H 0.179 0.821 46 H 0.207 0.793 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.514 5.878 17.378 19.156 hybrid contribution 0.454 -0.710 -0.413 0.939 sum -5.059 5.169 16.965 18.442 Atomic orbital electron populations 1.22063 0.93789 1.01939 1.03648 1.22019 0.95233 0.95882 0.83468 0.89173 1.23111 0.95757 1.00357 0.97168 1.21462 0.94823 0.89464 0.88902 0.90672 1.42503 1.05129 1.24891 1.63678 1.19599 0.85212 1.04582 1.27866 0.89776 1.25495 1.01209 0.98185 1.01233 1.69802 1.34294 1.15763 1.41883 0.85315 0.80678 0.76598 0.77774 1.19927 1.22984 1.20627 1.23522 0.86020 0.96297 0.99337 1.48491 1.28192 1.47702 1.08843 1.18094 0.82343 0.82158 0.81522 1.90667 1.29942 1.43251 1.81156 1.19680 0.97720 1.00520 0.94232 1.23120 0.94953 0.94871 1.02561 1.21392 1.00698 0.97435 0.91611 1.21369 0.93012 0.99351 0.99268 1.17849 0.94734 0.99452 0.85291 1.41773 1.19953 1.35518 1.10407 1.22262 0.90900 1.04325 0.99041 1.21329 1.02485 1.02949 0.95380 1.21349 0.96538 1.04040 1.00546 1.22449 1.03719 1.01495 0.87409 1.20793 1.00689 0.98438 0.91651 0.91441 0.89584 0.93899 0.91448 0.88156 0.79179 0.94119 0.89822 0.90970 0.81252 0.81839 0.82028 0.81450 0.82568 0.82077 0.79265 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 8.77 71.98 0.63 -3.49 16 2 C 0.14 3.67 3.75 45.47 0.17 3.84 16 3 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 4 C -0.13 -3.53 6.12 32.07 0.20 -3.33 16 5 C 0.16 5.45 3.60 46.26 0.17 5.61 16 6 H 0.08 2.42 8.12 -2.39 -0.02 2.40 16 7 N -0.72 -31.76 5.18 -316.93 -1.64 -33.40 16 8 C -0.24 -11.78 9.98 84.03 0.84 -10.94 16 9 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 10 C -0.07 -3.59 5.50 84.86 0.47 -3.13 16 11 N -0.97 -55.30 13.06 21.65 0.28 -55.02 16 12 Si 0.97 42.46 29.55 68.60 2.03 44.49 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 14 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 C 0.07 2.22 4.62 86.73 0.40 2.62 16 17 N -0.60 -17.95 3.24 -803.08 -2.60 -20.55 16 18 C 0.57 18.34 7.53 86.79 0.65 18.99 16 19 O -0.57 -20.58 14.19 -3.88 -0.06 -20.64 16 20 C -0.12 -3.42 5.87 -20.10 -0.12 -3.53 16 21 C -0.14 -3.53 8.59 22.54 0.19 -3.34 16 22 C -0.09 -1.95 10.02 22.21 0.22 -1.72 16 23 C -0.11 -2.19 9.45 22.44 0.21 -1.98 16 24 C 0.12 2.85 6.61 38.04 0.25 3.10 16 25 N -0.40 -9.21 2.97 -346.78 -1.03 -10.25 16 26 C -0.04 -0.88 10.73 83.18 0.89 0.02 16 27 C -0.20 -3.91 10.86 22.15 0.24 -3.67 16 28 C -0.20 -3.66 10.86 22.15 0.24 -3.42 16 29 C -0.02 -0.47 10.73 83.18 0.89 0.43 16 30 C -0.10 -2.60 8.99 22.65 0.20 -2.40 16 31 H 0.07 2.02 5.93 -2.39 -0.01 2.00 16 32 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 2.07 7.92 -2.39 -0.02 2.05 16 35 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.38 18.25 7.72 -92.72 -0.72 17.53 16 37 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 38 H 0.08 2.31 6.81 -2.39 -0.02 2.30 16 39 H 0.07 2.43 6.53 -2.39 -0.02 2.42 16 40 H 0.17 4.50 2.77 -7.40 -0.02 4.48 16 41 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 42 H 0.16 2.17 6.69 -2.91 -0.02 2.15 16 43 H 0.17 3.42 7.01 -2.91 -0.02 3.40 16 44 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 45 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.19 2.33 7.00 -2.91 -0.02 2.31 16 47 H 0.13 3.71 6.31 -2.91 -0.02 3.69 16 Total: -1.00 -64.17 377.81 4.02 -60.15 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: 0.28 Total: 41.55 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 6.76 Total: -6.34 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -4.99 Total: -119.22 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -64.17 4.02 -60.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989128626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.508 kcal (2) G-P(sol) polarization free energy of solvation -64.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds