Wall clock time and date at job start Tue Mar 31 2020 22:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.00134 * 2 1 4 4 C 1.54329 * 109.88107 * 238.90282 * 2 1 3 5 5 C 1.55152 * 102.94136 * 262.77702 * 4 2 1 6 6 H 1.09007 * 111.04050 * 82.58431 * 5 4 2 7 7 N 1.46504 * 111.00522 * 206.42473 * 5 4 2 8 8 C 1.36935 * 119.99849 * 198.65251 * 7 5 4 9 9 H 1.07997 * 120.00561 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99619 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00303 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00121 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47399 * 119.99829 * 12 10 8 15 15 H 1.48498 * 109.47295 * 240.00436 * 12 10 8 16 16 C 1.54915 * 101.58422 * 324.49604 * 5 4 2 17 17 N 1.47023 * 109.88095 * 121.09704 * 2 1 3 18 18 C 1.34777 * 125.64826 * 300.50846 * 17 2 1 19 19 O 1.21281 * 120.00040 * 359.97438 * 18 17 2 20 20 C 1.50704 * 120.00208 * 179.97438 * 18 17 2 21 21 C 1.50692 * 109.47285 * 180.02562 * 20 18 17 22 22 C 1.36177 * 120.18852 * 264.99824 * 21 20 18 23 23 C 1.39322 * 120.86607 * 180.02562 * 22 21 20 24 24 C 1.36103 * 121.06632 * 359.95690 * 23 22 21 25 25 C 1.40561 * 119.74846 * 0.02562 * 24 23 22 26 26 N 1.33688 * 121.07626 * 180.02562 * 25 24 23 27 27 C 1.31093 * 121.31151 * 179.29543 * 26 25 24 28 28 C 1.39337 * 121.75638 * 0.70353 * 27 26 25 29 29 C 1.36574 * 119.93603 * 359.53114 * 28 27 26 30 30 C 1.40386 * 120.19583 * 84.71757 * 21 20 18 31 31 H 1.09005 * 109.46911 * 300.35796 * 1 2 3 32 32 H 1.09000 * 109.46966 * 60.35273 * 1 2 3 33 33 H 1.08997 * 109.47321 * 180.36035 * 1 2 3 34 34 H 1.08996 * 110.71726 * 144.41560 * 4 2 1 35 35 H 1.09001 * 110.71894 * 21.13995 * 4 2 1 36 36 H 0.96996 * 119.99617 * 18.64937 * 7 5 4 37 37 H 0.97000 * 119.99517 * 0.02562 * 11 10 8 38 38 H 1.09005 * 110.36569 * 155.84385 * 16 5 4 39 39 H 1.08992 * 110.36839 * 278.17371 * 16 5 4 40 40 H 1.09000 * 109.46374 * 300.00222 * 20 18 17 41 41 H 1.09001 * 109.46878 * 59.99434 * 20 18 17 42 42 H 1.07998 * 119.57013 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.46176 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.12550 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.12118 * 180.23151 * 27 26 25 46 46 H 1.07997 * 120.02986 * 179.50554 * 28 27 26 47 47 H 1.08003 * 120.92175 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 6 2.3518 -2.1695 -0.6924 6 1 1.4454 -2.7743 -0.6603 7 7 3.3936 -2.8313 -1.4816 8 6 3.5386 -4.1916 -1.4204 9 1 2.8853 -4.7766 -0.7900 10 6 4.5254 -4.8187 -2.1686 11 7 5.3214 -4.1060 -2.9372 12 14 4.7239 -6.6742 -2.0846 13 1 3.7126 -7.2386 -1.1550 14 1 4.5301 -7.2546 -3.4377 15 1 6.0862 -7.0047 -1.5946 16 6 2.8568 -1.8498 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.7742 -0.3853 2.4657 19 8 1.0771 0.5745 2.7180 20 6 2.3545 -1.2102 3.5855 21 6 1.9203 -0.6363 4.9094 22 6 2.7254 0.2382 5.5738 23 6 2.3382 0.7769 6.7989 24 6 1.1460 0.4465 7.3661 25 6 0.2872 -0.4527 6.7107 26 7 -0.8901 -0.7954 7.2434 27 6 -1.7006 -1.6230 6.6297 28 6 -1.3721 -2.1967 5.4031 29 6 -0.1823 -1.8928 4.8054 30 6 0.6808 -0.9954 5.4622 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 -0.3634 -1.0276 0.0065 34 1 2.9656 -0.2833 -1.6182 35 1 1.2917 -0.7891 -2.0201 36 1 3.9806 -2.3059 -2.0475 37 1 5.2186 -3.1424 -2.9806 38 1 2.7087 -2.7081 1.3923 39 1 3.9091 -1.5668 0.7129 40 1 2.0000 -2.2375 3.5013 41 1 3.4426 -1.1951 3.5217 42 1 3.6770 0.5171 5.1459 43 1 2.9947 1.4682 7.3065 44 1 0.8609 0.8735 8.3163 45 1 -2.6449 -1.8726 7.0906 46 1 -2.0575 -2.8813 4.9258 47 1 0.0886 -2.3286 3.8550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989169199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:58 Heat of formation + Delta-G solvation = 33.657239 kcal Electronic energy + Delta-G solvation = -29031.770002 eV Core-core repulsion = 25179.461718 eV Total energy + Delta-G solvation = -3852.308284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.16410 -39.99905 -37.87229 -37.06469 -34.58340 -34.24640 -32.20771 -31.44873 -31.02905 -30.69109 -28.25887 -27.63438 -25.58521 -24.42309 -23.80385 -23.75221 -22.45754 -21.07681 -20.21337 -18.83592 -18.28800 -17.60049 -17.26522 -17.11227 -17.00712 -15.66634 -15.54586 -14.91389 -14.61716 -14.55578 -14.46691 -14.18038 -13.89643 -13.78174 -13.45255 -13.36573 -13.21391 -13.09598 -12.96662 -12.55112 -12.32978 -12.03330 -11.89331 -11.76655 -11.74694 -11.38590 -11.10162 -11.03134 -10.75932 -10.63947 -10.61519 -10.32824 -10.13672 -9.76076 -9.66317 -9.32072 -9.10381 -8.91513 -8.48273 -8.32641 -7.24538 -6.25572 -3.28720 0.22321 0.68506 1.82491 2.69278 2.72784 3.13382 3.43751 3.49358 3.58604 3.96184 4.12113 4.28253 4.49470 4.54959 4.61689 4.63260 4.65303 4.86786 4.96212 4.98907 4.99961 5.08613 5.12879 5.19823 5.31976 5.32996 5.36612 5.48264 5.51508 5.66266 5.70611 5.72594 5.77582 5.84711 5.89684 5.90601 5.96372 6.06028 6.13376 6.19381 6.28520 6.29085 6.36623 6.39505 6.51656 6.68471 6.69188 7.64940 7.68277 7.73675 8.25403 8.60086 9.03343 9.89984 10.03021 11.22247 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.002741 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.035656 B =10212.803854 C =10740.202478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.070 0.930 4 C -0.138 4.138 5 C 0.180 3.820 6 H 0.065 0.935 7 N -0.724 5.724 8 C -0.341 4.341 9 H 0.068 0.932 10 C -0.039 4.039 11 N -0.939 5.939 12 Si 1.084 2.916 13 H -0.294 1.294 14 H -0.292 1.292 15 H -0.292 1.292 16 C 0.072 3.928 17 N -0.610 5.610 18 C 0.529 3.471 19 O -0.540 6.540 20 C -0.105 4.105 21 C -0.035 4.035 22 C -0.107 4.107 23 C -0.095 4.095 24 C -0.098 4.098 25 C 0.127 3.873 26 N -0.477 5.477 27 C 0.129 3.871 28 C -0.178 4.178 29 C -0.051 4.051 30 C -0.084 4.084 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.370 0.630 37 H 0.257 0.743 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.158 0.842 46 H 0.137 0.863 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 7.359 16.370 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.088 0.912 4 C -0.177 4.177 5 C 0.068 3.932 6 H 0.083 0.917 7 N -0.366 5.366 8 C -0.472 4.472 9 H 0.086 0.914 10 C -0.237 4.237 11 N -0.584 5.584 12 Si 0.915 3.085 13 H -0.220 1.220 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.054 4.054 17 N -0.344 5.344 18 C 0.317 3.683 19 O -0.417 6.417 20 C -0.145 4.145 21 C -0.036 4.036 22 C -0.125 4.125 23 C -0.115 4.115 24 C -0.117 4.117 25 C 0.006 3.994 26 N -0.185 5.185 27 C -0.044 4.044 28 C -0.198 4.198 29 C -0.077 4.077 30 C -0.086 4.086 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.204 0.796 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.175 0.825 46 H 0.155 0.845 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.271 6.850 16.941 20.491 hybrid contribution -0.409 1.001 -0.487 1.186 sum -9.680 7.851 16.454 20.642 Atomic orbital electron populations 1.22129 0.94970 1.02250 1.02522 1.21470 0.94420 0.95883 0.84565 0.91225 1.23000 1.01677 0.96933 0.96068 1.21195 0.92515 0.91026 0.88511 0.91705 1.42342 1.37398 1.05095 1.51732 1.20087 1.17262 0.83247 1.26577 0.91447 1.25807 0.94734 1.06846 0.96356 1.70835 1.39957 1.07163 1.40425 0.83165 0.75584 0.73951 0.75789 1.22008 1.21890 1.21877 1.23496 0.94965 0.87064 0.99845 1.48647 1.50391 1.30881 1.04488 1.20008 0.80942 0.85083 0.82259 1.90695 1.38816 1.28883 1.83336 1.20716 1.03167 1.00402 0.90208 1.19099 0.93098 0.96927 0.94477 1.20784 1.00166 0.96353 0.95214 1.20852 0.96267 0.99098 0.95255 1.20753 0.93424 0.97220 1.00312 1.18828 0.92230 0.96670 0.91694 1.68038 1.03149 1.13279 1.33999 1.22930 0.98138 0.91474 0.91852 1.21872 0.98092 1.02362 0.97435 1.21494 0.93275 0.94200 0.98728 1.18601 0.95425 0.98819 0.95765 0.91426 0.91947 0.92489 0.90725 0.90085 0.79585 0.93193 0.91229 0.91225 0.87787 0.87418 0.85516 0.85193 0.84839 0.82488 0.84520 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.06 37.16 0.34 -1.80 16 2 C 0.14 1.99 3.50 -66.95 -0.23 1.75 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.05 6.12 -24.90 -0.15 -2.20 16 5 C 0.18 3.19 3.69 -65.78 -0.24 2.94 16 6 H 0.07 1.20 8.13 -51.92 -0.42 0.77 16 7 N -0.72 -16.35 5.27 -51.35 -0.27 -16.62 16 8 C -0.34 -8.80 9.98 -15.06 -0.15 -8.95 16 9 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 10 C -0.04 -1.06 5.50 -17.43 -0.10 -1.16 16 11 N -0.94 -27.46 13.70 55.49 0.76 -26.70 16 12 Si 1.08 24.53 29.92 -169.99 -5.09 19.44 16 13 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.07 1.13 6.39 -2.52 -0.02 1.12 16 17 N -0.61 -8.90 3.08 -163.01 -0.50 -9.41 16 18 C 0.53 7.77 7.62 -10.98 -0.08 7.69 16 19 O -0.54 -9.48 14.93 5.56 0.08 -9.40 16 20 C -0.11 -1.25 4.24 -29.04 -0.12 -1.37 16 21 C -0.03 -0.44 4.38 -104.56 -0.46 -0.89 16 22 C -0.11 -1.20 9.58 -39.92 -0.38 -1.58 16 23 C -0.09 -0.97 9.94 -39.95 -0.40 -1.36 16 24 C -0.10 -1.13 9.98 -39.47 -0.39 -1.52 16 25 C 0.13 1.70 6.60 -84.86 -0.56 1.14 16 26 N -0.48 -6.18 10.34 -10.97 -0.11 -6.29 16 27 C 0.13 1.34 11.15 -17.46 -0.19 1.15 16 28 C -0.18 -1.79 10.03 -39.77 -0.40 -2.19 16 29 C -0.05 -0.60 9.36 -39.23 -0.37 -0.97 16 30 C -0.08 -1.11 5.74 -106.81 -0.61 -1.73 16 31 H 0.07 1.00 6.74 -51.93 -0.35 0.65 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 35 H 0.08 1.13 7.83 -51.93 -0.41 0.72 16 36 H 0.37 8.68 6.54 -40.82 -0.27 8.41 16 37 H 0.26 7.34 6.77 -40.82 -0.28 7.07 16 38 H 0.07 1.05 7.48 -51.93 -0.39 0.66 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.10 1.11 6.44 -51.93 -0.33 0.77 16 41 H 0.11 1.11 8.04 -51.93 -0.42 0.70 16 42 H 0.13 1.18 8.05 -52.49 -0.42 0.76 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 47 H 0.13 1.46 6.57 -52.48 -0.34 1.11 16 LS Contribution 384.64 15.07 5.80 5.80 Total: -1.00 -32.65 384.64 -10.49 -43.15 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.63 Total: 9.96 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -4.53 Total: -9.93 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.13 Total: -59.02 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.09 Total: 19.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.65 -10.49 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.806 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds