Wall clock time and date at job start Tue Mar 31 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.00134 * 2 1 4 4 C 1.54329 * 109.88107 * 238.90282 * 2 1 3 5 5 C 1.55152 * 102.94136 * 262.77702 * 4 2 1 6 6 H 1.09007 * 111.04050 * 82.58431 * 5 4 2 7 7 N 1.46504 * 111.00522 * 206.42473 * 5 4 2 8 8 C 1.36935 * 119.99849 * 198.65251 * 7 5 4 9 9 H 1.07997 * 120.00561 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99619 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00303 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00121 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47399 * 119.99829 * 12 10 8 15 15 H 1.48498 * 109.47295 * 240.00436 * 12 10 8 16 16 C 1.54915 * 101.58422 * 324.49604 * 5 4 2 17 17 N 1.47023 * 109.88095 * 121.09704 * 2 1 3 18 18 C 1.34777 * 125.64826 * 300.50846 * 17 2 1 19 19 O 1.21281 * 120.00040 * 359.97438 * 18 17 2 20 20 C 1.50704 * 120.00208 * 179.97438 * 18 17 2 21 21 C 1.50692 * 109.47285 * 180.02562 * 20 18 17 22 22 C 1.36177 * 120.18852 * 264.99824 * 21 20 18 23 23 C 1.39322 * 120.86607 * 180.02562 * 22 21 20 24 24 C 1.36103 * 121.06632 * 359.95690 * 23 22 21 25 25 C 1.40561 * 119.74846 * 0.02562 * 24 23 22 26 26 N 1.33688 * 121.07626 * 180.02562 * 25 24 23 27 27 C 1.31093 * 121.31151 * 179.29543 * 26 25 24 28 28 C 1.39337 * 121.75638 * 0.70353 * 27 26 25 29 29 C 1.36574 * 119.93603 * 359.53114 * 28 27 26 30 30 C 1.40386 * 120.19583 * 84.71757 * 21 20 18 31 31 H 1.09005 * 109.46911 * 300.35796 * 1 2 3 32 32 H 1.09000 * 109.46966 * 60.35273 * 1 2 3 33 33 H 1.08997 * 109.47321 * 180.36035 * 1 2 3 34 34 H 1.08996 * 110.71726 * 144.41560 * 4 2 1 35 35 H 1.09001 * 110.71894 * 21.13995 * 4 2 1 36 36 H 0.96996 * 119.99617 * 18.64937 * 7 5 4 37 37 H 0.97000 * 119.99517 * 0.02562 * 11 10 8 38 38 H 1.09005 * 110.36569 * 155.84385 * 16 5 4 39 39 H 1.08992 * 110.36839 * 278.17371 * 16 5 4 40 40 H 1.09000 * 109.46374 * 300.00222 * 20 18 17 41 41 H 1.09001 * 109.46878 * 59.99434 * 20 18 17 42 42 H 1.07998 * 119.57013 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.46176 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.12550 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.12118 * 180.23151 * 27 26 25 46 46 H 1.07997 * 120.02986 * 179.50554 * 28 27 26 47 47 H 1.08003 * 120.92175 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 6 2.3518 -2.1695 -0.6924 6 1 1.4454 -2.7743 -0.6603 7 7 3.3936 -2.8313 -1.4816 8 6 3.5386 -4.1916 -1.4204 9 1 2.8853 -4.7766 -0.7900 10 6 4.5254 -4.8187 -2.1686 11 7 5.3214 -4.1060 -2.9372 12 14 4.7239 -6.6742 -2.0846 13 1 3.7126 -7.2386 -1.1550 14 1 4.5301 -7.2546 -3.4377 15 1 6.0862 -7.0047 -1.5946 16 6 2.8568 -1.8498 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.7742 -0.3853 2.4657 19 8 1.0771 0.5745 2.7180 20 6 2.3545 -1.2102 3.5855 21 6 1.9203 -0.6363 4.9094 22 6 2.7254 0.2382 5.5738 23 6 2.3382 0.7769 6.7989 24 6 1.1460 0.4465 7.3661 25 6 0.2872 -0.4527 6.7107 26 7 -0.8901 -0.7954 7.2434 27 6 -1.7006 -1.6230 6.6297 28 6 -1.3721 -2.1967 5.4031 29 6 -0.1823 -1.8928 4.8054 30 6 0.6808 -0.9954 5.4622 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 -0.3634 -1.0276 0.0065 34 1 2.9656 -0.2833 -1.6182 35 1 1.2917 -0.7891 -2.0201 36 1 3.9806 -2.3059 -2.0475 37 1 5.2186 -3.1424 -2.9806 38 1 2.7087 -2.7081 1.3923 39 1 3.9091 -1.5668 0.7129 40 1 2.0000 -2.2375 3.5013 41 1 3.4426 -1.1951 3.5217 42 1 3.6770 0.5171 5.1459 43 1 2.9947 1.4682 7.3065 44 1 0.8609 0.8735 8.3163 45 1 -2.6449 -1.8726 7.0906 46 1 -2.0575 -2.8813 4.9258 47 1 0.0886 -2.3286 3.8550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989169199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:57 Heat of formation + Delta-G solvation = 15.098890 kcal Electronic energy + Delta-G solvation = -29032.574752 eV Core-core repulsion = 25179.461718 eV Total energy + Delta-G solvation = -3853.113034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.05244 -41.16139 -39.04950 -38.02380 -36.30927 -35.15209 -33.41296 -33.04110 -31.98745 -31.50864 -29.80072 -28.61960 -26.80496 -25.68967 -25.23245 -24.58437 -23.68305 -22.23296 -21.41528 -19.99940 -19.47580 -19.10032 -18.22692 -18.12419 -17.94515 -16.99101 -16.82004 -16.14476 -15.94106 -15.60572 -15.50175 -15.34285 -15.13353 -14.86350 -14.74151 -14.47096 -14.34781 -14.18124 -13.91979 -13.84416 -13.40478 -13.19487 -12.96733 -12.75555 -12.69404 -12.63145 -12.56551 -12.26907 -12.18874 -12.07763 -11.82819 -11.68530 -11.51675 -11.20462 -11.06853 -10.83906 -10.52431 -9.75156 -9.73392 -9.19649 -9.14218 -8.35770 -5.32898 -0.61647 -0.14764 0.94576 1.53969 1.63066 1.72650 1.82845 1.84199 2.06241 2.72827 3.07504 3.34273 3.36226 3.39883 3.41494 3.72784 3.76344 3.80396 3.84268 3.86261 3.87007 4.02162 4.07506 4.18161 4.25817 4.28436 4.37415 4.40482 4.43318 4.49042 4.55894 4.63888 4.70902 4.82751 4.83980 4.93757 4.98697 5.04525 5.06167 5.11047 5.17670 5.25664 5.37246 5.39610 5.46145 5.57478 5.64725 5.88955 6.47316 6.53030 6.89670 7.06726 7.10491 7.98395 8.09106 9.15915 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.002741 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.035656 B =10212.803854 C =10740.202478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 H 0.071 0.929 4 C -0.126 4.126 5 C 0.172 3.828 6 H 0.061 0.939 7 N -0.736 5.736 8 C -0.329 4.329 9 H 0.072 0.928 10 C -0.099 4.099 11 N -0.977 5.977 12 Si 1.127 2.873 13 H -0.269 1.269 14 H -0.296 1.296 15 H -0.293 1.293 16 C 0.087 3.913 17 N -0.608 5.608 18 C 0.531 3.469 19 O -0.568 6.568 20 C -0.099 4.099 21 C -0.053 4.053 22 C -0.114 4.114 23 C -0.093 4.093 24 C -0.111 4.111 25 C 0.100 3.900 26 N -0.501 5.501 27 C 0.124 3.876 28 C -0.173 4.173 29 C -0.071 4.071 30 C -0.105 4.105 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.363 0.637 37 H 0.247 0.753 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.144 0.856 43 H 0.161 0.839 44 H 0.146 0.854 45 H 0.191 0.809 46 H 0.167 0.833 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 7.014 17.414 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 H 0.089 0.911 4 C -0.165 4.165 5 C 0.062 3.938 6 H 0.079 0.921 7 N -0.377 5.377 8 C -0.460 4.460 9 H 0.090 0.910 10 C -0.291 4.291 11 N -0.624 5.624 12 Si 0.953 3.047 13 H -0.194 1.194 14 H -0.223 1.223 15 H -0.221 1.221 16 C -0.039 4.039 17 N -0.342 5.342 18 C 0.321 3.679 19 O -0.448 6.448 20 C -0.138 4.138 21 C -0.055 4.055 22 C -0.132 4.132 23 C -0.112 4.112 24 C -0.130 4.130 25 C -0.021 4.021 26 N -0.209 5.209 27 C -0.048 4.048 28 C -0.193 4.193 29 C -0.096 4.096 30 C -0.107 4.107 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.196 0.804 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.162 0.838 43 H 0.178 0.822 44 H 0.164 0.836 45 H 0.208 0.792 46 H 0.184 0.816 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.229 6.528 18.023 21.728 hybrid contribution -0.240 1.185 -0.757 1.427 sum -10.469 7.713 17.266 21.615 Atomic orbital electron populations 1.22047 0.94042 1.02182 1.02707 1.21512 0.95100 0.95755 0.84054 0.91111 1.22905 1.02032 0.94911 0.96602 1.21345 0.91047 0.92156 0.89251 0.92090 1.42468 1.38395 1.04334 1.52523 1.20395 1.15987 0.84757 1.24850 0.91019 1.27041 0.95191 1.10178 0.96693 1.70938 1.41878 1.06800 1.42832 0.82609 0.76003 0.70102 0.75990 1.19374 1.22287 1.22058 1.23137 0.94458 0.87741 0.98534 1.48642 1.50209 1.30496 1.04835 1.20446 0.80230 0.84783 0.82486 1.90684 1.40143 1.30315 1.83644 1.20718 1.03892 1.00306 0.88916 1.19241 0.93437 0.97887 0.94886 1.21126 1.00699 0.95781 0.95554 1.21193 0.96182 0.98947 0.94885 1.21031 0.93804 0.97217 1.00941 1.19191 0.92963 0.97619 0.92307 1.68073 1.03553 1.14459 1.34844 1.23553 0.98851 0.90429 0.91975 1.22230 0.97832 1.02052 0.97142 1.21694 0.94085 0.94655 0.99214 1.18837 0.96125 0.99551 0.96164 0.93009 0.89988 0.92597 0.90848 0.88954 0.80381 0.94250 0.90309 0.92031 0.86666 0.85826 0.83822 0.82158 0.83648 0.79232 0.81566 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.06 71.98 0.65 -3.14 16 2 C 0.14 3.75 3.50 45.34 0.16 3.91 16 3 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.13 -3.56 6.12 31.78 0.19 -3.37 16 5 C 0.17 5.91 3.69 46.38 0.17 6.08 16 6 H 0.06 2.16 8.13 -2.38 -0.02 2.14 16 7 N -0.74 -32.91 5.27 -316.36 -1.67 -34.58 16 8 C -0.33 -16.70 9.98 84.03 0.84 -15.86 16 9 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 10 C -0.10 -5.37 5.50 84.86 0.47 -4.90 16 11 N -0.98 -57.76 13.70 21.65 0.30 -57.47 16 12 Si 1.13 48.92 29.92 68.60 2.05 50.97 16 13 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 14 H -0.30 -12.90 7.11 99.48 0.71 -12.20 16 15 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 16 C 0.09 2.61 6.39 86.86 0.55 3.17 16 17 N -0.61 -16.95 3.08 -788.02 -2.43 -19.38 16 18 C 0.53 15.02 7.62 87.66 0.67 15.69 16 19 O -0.57 -19.64 14.93 -3.03 -0.05 -19.69 16 20 C -0.10 -2.23 4.24 29.10 0.12 -2.10 16 21 C -0.05 -1.29 4.38 -19.82 -0.09 -1.38 16 22 C -0.11 -2.41 9.58 22.05 0.21 -2.20 16 23 C -0.09 -1.76 9.94 22.03 0.22 -1.54 16 24 C -0.11 -2.49 9.98 22.34 0.22 -2.26 16 25 C 0.10 2.65 6.60 40.29 0.27 2.91 16 26 N -0.50 -12.71 10.34 -188.63 -1.95 -14.66 16 27 C 0.12 2.42 11.15 85.07 0.95 3.36 16 28 C -0.17 -3.22 10.03 22.15 0.22 -2.99 16 29 C -0.07 -1.62 9.36 22.50 0.21 -1.41 16 30 C -0.10 -2.74 5.74 -21.28 -0.12 -2.86 16 31 H 0.05 1.48 6.74 -2.38 -0.02 1.46 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 2.12 8.00 -2.39 -0.02 2.10 16 35 H 0.09 2.41 7.83 -2.39 -0.02 2.39 16 36 H 0.36 17.18 6.54 -92.71 -0.61 16.57 16 37 H 0.25 14.44 6.77 -92.71 -0.63 13.81 16 38 H 0.08 2.22 7.48 -2.38 -0.02 2.21 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.12 2.30 6.44 -2.39 -0.02 2.28 16 41 H 0.12 2.34 8.04 -2.39 -0.02 2.32 16 42 H 0.14 2.42 8.05 -2.91 -0.02 2.40 16 43 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 44 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 45 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 47 H 0.14 2.89 6.57 -2.91 -0.02 2.87 16 Total: -1.00 -70.64 384.64 2.70 -67.94 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.52 Total: 35.76 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.92 Total: -8.90 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -5.75 Total: -126.09 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.05 Total: 50.97 kcal Total: -70.64 2.70 -67.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.040 kcal (2) G-P(sol) polarization free energy of solvation -70.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds