Wall clock time and date at job start Tue Mar 31 2020 22:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.87362 * 2 1 4 4 C 1.54325 * 109.88526 * 121.17605 * 2 1 3 5 5 C 1.55155 * 102.94360 * 141.61177 * 4 2 1 6 6 H 1.09004 * 111.00421 * 206.42760 * 5 4 2 7 7 N 1.46492 * 111.00359 * 82.61423 * 5 4 2 8 8 C 1.36943 * 120.00021 * 155.00285 * 7 5 4 9 9 H 1.07999 * 119.99509 * 359.97438 * 8 7 5 10 10 C 1.38814 * 119.99973 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99973 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99884 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46966 * 59.99560 * 12 10 8 14 14 H 1.48500 * 109.47090 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47013 * 299.99702 * 12 10 8 16 16 C 1.55132 * 101.48719 * 324.33126 * 5 4 2 17 17 N 1.47026 * 109.88518 * 238.98208 * 2 1 3 18 18 C 1.34784 * 125.64491 * 61.60477 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.72909 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.97438 * 18 17 2 21 21 C 1.50707 * 109.47011 * 180.02562 * 20 18 17 22 22 C 1.39380 * 119.48702 * 269.73224 * 21 20 18 23 23 C 1.36170 * 121.08065 * 179.70881 * 22 21 20 24 24 C 1.40373 * 119.52003 * 0.55062 * 23 22 21 25 25 C 1.40432 * 122.08396 * 179.72694 * 24 23 22 26 26 N 1.31241 * 119.88158 * 180.02562 * 25 24 23 27 27 C 1.32606 * 122.77913 * 359.97438 * 26 25 24 28 28 C 1.36180 * 121.87552 * 359.97237 * 27 26 25 29 29 C 1.40692 * 118.66512 * 0.02716 * 28 27 26 30 30 C 1.36214 * 119.49000 * 89.99562 * 21 20 18 31 31 H 1.09005 * 109.46986 * 179.56140 * 1 2 3 32 32 H 1.08991 * 109.47221 * 299.55963 * 1 2 3 33 33 H 1.09005 * 109.47006 * 59.56728 * 1 2 3 34 34 H 1.08996 * 110.72050 * 259.97613 * 4 2 1 35 35 H 1.09003 * 110.71764 * 23.06725 * 4 2 1 36 36 H 0.97005 * 120.00428 * 334.99373 * 7 5 4 37 37 H 0.97001 * 120.00052 * 179.97438 * 11 10 8 38 38 H 1.09001 * 110.49783 * 278.45863 * 16 5 4 39 39 H 1.09000 * 110.33989 * 156.06084 * 16 5 4 40 40 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 41 41 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 42 42 H 1.08005 * 119.45641 * 359.97438 * 22 21 20 43 43 H 1.08004 * 120.23764 * 180.30030 * 23 22 21 44 44 H 1.08004 * 120.05518 * 0.02562 * 25 24 23 45 45 H 1.08004 * 119.06325 * 180.02562 * 27 26 25 46 46 H 1.07993 * 120.66583 * 180.02562 * 28 27 26 47 47 H 1.07995 * 120.26542 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 1.2416 5 6 3.2877 -1.5151 0.6902 6 1 3.4852 -2.4128 1.2762 7 7 4.4676 -0.6479 0.6494 8 6 5.7218 -1.1955 0.6980 9 1 5.8410 -2.2667 0.7669 10 6 6.8399 -0.3737 0.6587 11 7 6.6946 0.9316 0.5742 12 14 8.5508 -1.1207 0.7257 13 1 8.7371 -2.0355 -0.4291 14 1 9.5660 -0.0384 0.6681 15 1 8.7093 -1.8819 1.9909 16 6 2.8100 -1.8815 -0.7395 17 7 2.0300 -0.7125 -1.1849 18 6 1.8074 -0.3586 -2.4663 19 8 1.1391 0.6218 -2.7172 20 6 2.3843 -1.1844 -3.5870 21 6 1.9921 -0.5792 -4.9103 22 6 0.8128 -0.9894 -5.5298 23 6 0.4243 -0.4598 -6.7226 24 6 1.2296 0.5068 -7.3453 25 6 0.8838 1.0841 -8.5779 26 7 1.6692 1.9841 -9.1217 27 6 2.7985 2.3874 -8.5558 28 6 3.2219 1.8898 -7.3609 29 6 2.4325 0.9202 -6.7158 30 6 2.7983 0.3563 -5.4850 31 1 -0.3633 -1.0277 -0.0079 32 1 -0.3633 0.5069 0.8938 33 1 -0.3633 0.5206 -0.8861 34 1 2.3529 -0.0488 2.0200 35 1 1.3039 -1.4459 1.6181 36 1 4.3605 0.3142 0.5877 37 1 7.4758 1.5059 0.5472 38 1 2.1801 -2.7708 -0.7154 39 1 3.6656 -2.0392 -1.3961 40 1 3.4710 -1.2017 -3.5036 41 1 1.9989 -2.2021 -3.5241 42 1 0.1948 -1.7364 -5.0537 43 1 -0.4946 -0.7841 -7.1882 44 1 -0.0269 0.7880 -9.0774 45 1 3.3994 3.1323 -9.0563 46 1 4.1449 2.2326 -6.9174 47 1 3.7113 0.6623 -4.9962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989182458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:43 Heat of formation + Delta-G solvation = 10.516125 kcal Electronic energy + Delta-G solvation = -28788.564289 eV Core-core repulsion = 24935.252531 eV Total energy + Delta-G solvation = -3853.311758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.86746 -41.12964 -39.12937 -38.12247 -35.77646 -34.15431 -33.77259 -33.14581 -32.54687 -30.72860 -30.11768 -28.92344 -26.69574 -25.71051 -24.98702 -24.32381 -23.30810 -22.77429 -21.38654 -19.89034 -19.25336 -18.76031 -18.13003 -18.04898 -17.58880 -17.22172 -16.44260 -16.18367 -15.88848 -15.60079 -15.36690 -15.28825 -15.09352 -14.90334 -14.75694 -14.42697 -14.38121 -14.07604 -13.61159 -13.46576 -13.23878 -13.21121 -12.98701 -12.84883 -12.84105 -12.71991 -12.64123 -12.26414 -12.23547 -12.06051 -11.98449 -11.62641 -11.46889 -11.19487 -11.03012 -10.82811 -10.51113 -9.90763 -9.61940 -9.04244 -8.96732 -7.92863 -5.21879 -0.60495 -0.12534 0.94635 1.49406 1.51027 1.57059 1.66214 1.91310 2.26911 2.57079 3.08777 3.38767 3.46099 3.53837 3.57186 3.61287 3.83670 3.88390 3.90395 3.95773 4.02479 4.06697 4.15545 4.19730 4.32186 4.39339 4.44569 4.49721 4.54512 4.68052 4.71709 4.76127 4.78616 4.81819 4.85653 4.96841 5.08342 5.10688 5.12745 5.20122 5.24990 5.35679 5.37226 5.51570 5.54373 5.56635 5.67655 5.87198 6.27757 6.65034 6.97190 7.21571 7.34389 8.10007 8.31681 9.30243 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.003039 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.973856 B = 9210.817014 C =11001.727009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 H 0.034 0.966 4 C -0.124 4.124 5 C 0.155 3.845 6 H 0.090 0.910 7 N -0.727 5.727 8 C -0.235 4.235 9 H 0.087 0.913 10 C -0.076 4.076 11 N -0.972 5.972 12 Si 0.969 3.031 13 H -0.276 1.276 14 H -0.305 1.305 15 H -0.276 1.276 16 C 0.076 3.924 17 N -0.602 5.602 18 C 0.525 3.475 19 O -0.582 6.582 20 C -0.097 4.097 21 C -0.041 4.041 22 C -0.113 4.113 23 C -0.079 4.079 24 C -0.131 4.131 25 C 0.148 3.852 26 N -0.515 5.515 27 C 0.066 3.934 28 C -0.168 4.168 29 C -0.040 4.040 30 C -0.126 4.126 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.369 0.631 37 H 0.247 0.753 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.172 0.828 44 H 0.197 0.803 45 H 0.172 0.828 46 H 0.145 0.855 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.985 -8.278 -11.754 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.163 4.163 5 C 0.045 3.955 6 H 0.107 0.893 7 N -0.365 5.365 8 C -0.367 4.367 9 H 0.105 0.895 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.798 3.202 13 H -0.202 1.202 14 H -0.232 1.232 15 H -0.202 1.202 16 C -0.049 4.049 17 N -0.334 5.334 18 C 0.315 3.685 19 O -0.463 6.463 20 C -0.136 4.136 21 C -0.043 4.043 22 C -0.130 4.130 23 C -0.099 4.099 24 C -0.133 4.133 25 C -0.023 4.023 26 N -0.223 5.223 27 C -0.076 4.076 28 C -0.188 4.188 29 C -0.045 4.045 30 C -0.144 4.144 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.200 0.800 37 H 0.056 0.944 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.189 0.811 44 H 0.214 0.786 45 H 0.189 0.811 46 H 0.162 0.838 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.276 -7.415 -12.724 21.219 hybrid contribution 1.893 0.489 1.063 2.225 sum -13.383 -6.926 -11.661 19.054 Atomic orbital electron populations 1.22008 0.93423 1.02821 1.02142 1.21494 0.95090 0.95012 0.85362 0.94822 1.23005 0.97854 1.00022 0.95409 1.21699 0.86042 0.94373 0.93365 0.89259 1.42542 1.01171 1.05306 1.87439 1.19659 0.84187 0.92537 1.40276 0.89510 1.25538 1.01587 0.95692 1.04026 1.69832 1.29339 1.03565 1.59532 0.85281 0.79928 0.76648 0.78312 1.20246 1.23182 1.20211 1.23381 0.94789 0.87813 0.98888 1.48553 1.51628 1.28739 1.04514 1.20511 0.80004 0.84971 0.83002 1.90659 1.42205 1.29464 1.83971 1.20755 1.03061 1.00901 0.88924 1.19366 0.94951 0.95523 0.94422 1.21075 0.95384 1.00858 0.95722 1.21324 0.99566 0.94109 0.94860 1.19336 0.95927 1.00286 0.97777 1.23743 0.98306 0.89888 0.90403 1.67472 1.05595 1.13490 1.35752 1.22488 0.93228 0.98893 0.93038 1.22130 1.01444 0.97942 0.97293 1.18401 0.95015 0.96305 0.94828 1.20904 1.00887 0.97570 0.95064 0.90822 0.90413 0.93946 0.91101 0.86867 0.80035 0.94382 0.88182 0.91507 0.87989 0.84620 0.83203 0.81077 0.78610 0.81061 0.83752 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.10 71.98 0.66 -3.05 16 2 C 0.13 4.12 3.45 45.34 0.16 4.28 16 3 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.12 -3.40 6.07 31.78 0.19 -3.21 16 5 C 0.16 5.05 3.72 46.46 0.17 5.22 16 6 H 0.09 2.67 8.09 -2.38 -0.02 2.65 16 7 N -0.73 -33.28 5.25 -316.02 -1.66 -34.94 16 8 C -0.23 -11.91 9.96 84.03 0.84 -11.07 16 9 H 0.09 4.07 7.83 -2.91 -0.02 4.04 16 10 C -0.08 -4.19 5.50 84.86 0.47 -3.72 16 11 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 12 Si 0.97 44.25 29.55 68.60 2.03 46.28 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 C 0.08 2.12 6.41 86.93 0.56 2.67 16 17 N -0.60 -18.66 3.06 -787.61 -2.41 -21.07 16 18 C 0.53 17.19 7.64 87.65 0.67 17.86 16 19 O -0.58 -23.19 15.06 -3.01 -0.05 -23.23 16 20 C -0.10 -2.45 4.80 29.10 0.14 -2.31 16 21 C -0.04 -1.07 4.34 -20.06 -0.09 -1.16 16 22 C -0.11 -2.36 9.58 22.06 0.21 -2.15 16 23 C -0.08 -1.48 9.81 22.31 0.22 -1.26 16 24 C -0.13 -3.06 5.74 -21.31 -0.12 -3.18 16 25 C 0.15 3.02 11.05 85.32 0.94 3.97 16 26 N -0.51 -12.41 10.30 -195.52 -2.01 -14.43 16 27 C 0.07 1.52 11.07 84.10 0.93 2.45 16 28 C -0.17 -4.24 9.88 22.39 0.22 -4.01 16 29 C -0.04 -1.11 5.75 -21.28 -0.12 -1.24 16 30 C -0.13 -3.67 9.42 22.28 0.21 -3.46 16 31 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.28 6.87 -2.38 -0.02 1.27 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.11 2.25 7.85 -2.39 -0.02 2.23 16 36 H 0.37 19.28 7.86 -92.70 -0.73 18.56 16 37 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 2.05 7.48 -2.39 -0.02 2.03 16 40 H 0.10 2.69 7.78 -2.38 -0.02 2.67 16 41 H 0.14 2.41 8.08 -2.39 -0.02 2.39 16 42 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.20 2.35 8.06 -2.91 -0.02 2.33 16 45 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 46 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 47 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -73.73 390.09 2.68 -71.04 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: 0.25 Total: 37.91 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 6.25 Total: -3.37 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -5.80 Total: -128.64 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -73.73 2.68 -71.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989182458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.561 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds