Wall clock time and date at job start Tue Mar 31 2020 22:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.99758 * 2 1 4 4 C 1.54325 * 109.88263 * 238.90242 * 2 1 3 5 5 C 1.55154 * 102.94404 * 218.38988 * 4 2 1 6 6 H 1.09002 * 111.00378 * 153.57794 * 5 4 2 7 7 N 1.46508 * 111.00515 * 277.39382 * 5 4 2 8 8 C 1.36928 * 119.99741 * 201.81950 * 7 5 4 9 9 H 1.08005 * 120.00561 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00040 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00172 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99684 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46772 * 90.00534 * 12 10 8 14 14 H 1.48504 * 109.47065 * 210.00385 * 12 10 8 15 15 H 1.48502 * 109.47032 * 330.00423 * 12 10 8 16 16 C 1.54914 * 101.58036 * 35.50280 * 5 4 2 17 17 N 1.47018 * 109.88163 * 121.09724 * 2 1 3 18 18 C 1.34775 * 125.64781 * 298.38135 * 17 2 1 19 19 O 1.21285 * 120.00298 * 359.97438 * 18 17 2 20 20 C 1.50708 * 119.99975 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.46859 * 179.97438 * 20 18 17 22 22 C 1.36118 * 120.12623 * 264.99884 * 21 20 18 23 23 C 1.39314 * 121.06416 * 180.02562 * 22 21 20 24 24 C 1.36169 * 120.87147 * 359.95683 * 23 22 21 25 25 C 1.40391 * 119.61576 * 0.02562 * 24 23 22 26 26 C 1.40777 * 121.38908 * 180.02562 * 25 24 23 27 27 C 1.36575 * 118.14898 * 179.12584 * 26 25 24 28 28 C 1.39336 * 119.93709 * 0.88327 * 27 26 25 29 29 N 1.31078 * 121.75385 * 359.38615 * 28 27 26 30 30 C 1.33689 * 121.31906 * 0.02562 * 29 28 27 31 31 H 1.09000 * 109.46918 * 181.09031 * 1 2 3 32 32 H 1.08997 * 109.47474 * 301.09952 * 1 2 3 33 33 H 1.08999 * 109.46984 * 61.09988 * 1 2 3 34 34 H 1.09011 * 110.71859 * 100.02630 * 4 2 1 35 35 H 1.09004 * 110.87491 * 336.82866 * 4 2 1 36 36 H 0.96995 * 119.99891 * 21.81742 * 7 5 4 37 37 H 0.96997 * 119.99596 * 179.97438 * 11 10 8 38 38 H 1.08998 * 110.36125 * 81.82698 * 16 5 4 39 39 H 1.08994 * 110.36786 * 204.14975 * 16 5 4 40 40 H 1.08991 * 109.47322 * 299.99640 * 20 18 17 41 41 H 1.08997 * 109.46897 * 60.00354 * 20 18 17 42 42 H 1.08004 * 119.46414 * 0.02562 * 22 21 20 43 43 H 1.08003 * 119.55780 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.19093 * 180.02562 * 24 23 22 45 45 H 1.08004 * 120.91920 * 359.97438 * 26 25 24 46 46 H 1.08002 * 120.03404 * 180.27077 * 27 26 25 47 47 H 1.08001 * 119.12417 * 179.41488 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 6 3.2876 -1.5143 -0.6924 6 1 3.4852 -2.4111 -1.2796 7 7 4.4677 -0.6470 -0.6501 8 6 5.7214 -1.1973 -0.6338 9 1 5.8405 -2.2706 -0.6525 10 6 6.8396 -0.3757 -0.5933 11 7 8.0447 -0.9046 -0.5781 12 14 6.6338 1.4807 -0.5617 13 1 6.5486 1.9453 0.8462 14 1 7.7994 2.1193 -1.2241 15 1 5.3897 1.8531 -1.2820 16 6 2.8145 -1.8794 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8075 -0.3619 2.4656 19 8 1.1439 0.6214 2.7180 20 6 2.3834 -1.1901 3.5854 21 6 1.9916 -0.5863 4.9094 22 6 2.8359 0.2710 5.5459 23 6 2.4938 0.8400 6.7707 24 6 1.3026 0.5542 7.3655 25 6 0.4069 -0.3256 6.7373 26 6 -0.8345 -0.6467 7.3185 27 6 -1.6625 -1.4959 6.6413 28 6 -1.2605 -2.0322 5.4198 29 7 -0.1014 -1.7357 4.8842 30 6 0.7508 -0.9021 5.4893 31 1 -0.3633 -1.0275 0.0196 32 1 -0.3634 0.5308 0.8799 33 1 -0.3633 0.4967 -0.8997 34 1 2.3529 -0.0460 -2.0201 35 1 1.3064 -1.4459 -1.6211 36 1 4.3608 0.3169 -0.6338 37 1 8.8260 -0.3304 -0.5501 38 1 2.1886 -2.7715 0.7128 39 1 3.6715 -2.0339 1.3923 40 1 1.9969 -2.2071 3.5210 41 1 3.4700 -1.2082 3.5021 42 1 3.7863 0.5139 5.0941 43 1 3.1824 1.5168 7.2546 44 1 1.0484 1.0019 8.3149 45 1 -1.1297 -0.2222 8.2667 46 1 -2.6239 -1.7593 7.0570 47 1 -1.9217 -2.7098 4.9001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989268488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:27 Heat of formation + Delta-G solvation = 37.033100 kcal Electronic energy + Delta-G solvation = -29434.357561 eV Core-core repulsion = 25582.195666 eV Total energy + Delta-G solvation = -3852.161896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.02759 -39.78375 -37.67077 -36.96097 -34.21733 -34.00707 -32.02655 -31.48954 -30.92205 -30.63096 -28.95239 -27.45118 -25.50720 -24.31680 -23.68190 -23.49983 -22.38758 -20.95381 -19.99981 -18.54435 -18.36299 -17.71981 -17.05823 -16.86091 -16.70988 -15.98466 -15.07832 -14.74081 -14.60773 -14.38529 -14.27426 -14.05491 -13.89425 -13.75225 -13.35506 -13.16024 -13.03154 -12.76196 -12.71555 -12.28116 -12.12952 -11.93753 -11.79893 -11.71321 -11.66879 -11.36926 -11.26284 -11.05374 -10.84334 -10.63266 -10.57420 -10.35346 -10.07226 -9.65596 -9.56374 -9.45528 -9.06927 -8.84687 -8.24563 -8.22320 -7.34751 -5.84674 -3.21194 0.29030 0.74751 1.88483 2.83824 3.05682 3.33885 3.38435 3.39465 3.42694 4.03723 4.22230 4.39233 4.53284 4.58225 4.69602 4.76629 4.80091 4.95707 5.05066 5.07134 5.14051 5.23869 5.25048 5.32454 5.35300 5.40541 5.51154 5.61406 5.65788 5.73164 5.74895 5.82019 5.84558 5.93897 5.95599 6.01889 6.08717 6.15317 6.29747 6.34880 6.36347 6.38846 6.43072 6.52731 6.58725 6.77389 6.81297 7.84618 7.90339 7.95964 8.34434 8.57934 9.11936 9.84811 10.03890 11.33028 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.003389 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.461902 B = 8260.632365 C = 9412.906431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.068 0.932 4 C -0.141 4.141 5 C 0.174 3.826 6 H 0.081 0.919 7 N -0.737 5.737 8 C -0.249 4.249 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.930 5.930 12 Si 0.881 3.119 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.070 3.930 17 N -0.603 5.603 18 C 0.542 3.458 19 O -0.548 6.548 20 C -0.095 4.095 21 C -0.030 4.030 22 C -0.094 4.094 23 C -0.106 4.106 24 C -0.106 4.106 25 C -0.102 4.102 26 C -0.060 4.060 27 C -0.179 4.179 28 C 0.126 3.874 29 N -0.464 5.464 30 C 0.143 3.857 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.363 0.637 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.746 -1.489 13.731 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.086 0.914 4 C -0.180 4.180 5 C 0.063 3.937 6 H 0.099 0.901 7 N -0.379 5.379 8 C -0.379 4.379 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.577 5.577 12 Si 0.711 3.289 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.056 4.056 17 N -0.337 5.337 18 C 0.331 3.669 19 O -0.426 6.426 20 C -0.134 4.134 21 C -0.032 4.032 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.104 4.104 26 C -0.086 4.086 27 C -0.199 4.199 28 C -0.047 4.047 29 N -0.171 5.171 30 C 0.021 3.979 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.196 0.804 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.523 -1.415 13.098 22.730 hybrid contribution -0.261 1.739 0.901 1.975 sum -18.784 0.324 13.998 23.428 Atomic orbital electron populations 1.22102 0.95336 1.01887 1.02223 1.21444 0.93785 0.96341 0.84982 0.91405 1.23088 0.98391 1.00114 0.96370 1.21292 0.86064 0.94336 0.92048 0.90142 1.42697 1.01843 1.03958 1.89352 1.19060 0.81262 0.93920 1.43657 0.88906 1.24648 0.95099 0.97224 1.01660 1.69693 0.96931 1.34141 1.56911 0.86615 0.76973 0.87385 0.77931 1.21063 1.21643 1.20339 1.23347 0.94598 0.87148 1.00511 1.48431 1.52070 1.28762 1.04407 1.19874 0.80041 0.84894 0.82111 1.90648 1.40576 1.28002 1.83412 1.20540 1.02591 1.00683 0.89606 1.19020 0.92071 0.96961 0.95099 1.20876 1.00115 0.95354 0.95054 1.20893 0.96818 0.99386 0.95314 1.20918 0.93935 0.97743 0.99882 1.18794 0.95994 0.99530 0.96069 1.21423 0.92344 0.95622 0.99190 1.21846 1.01178 0.99746 0.97160 1.22926 0.92856 0.96434 0.92488 1.67987 1.03424 1.12930 1.32789 1.18601 0.93864 0.94275 0.91121 0.92709 0.91680 0.92239 0.90016 0.90315 0.80436 0.92955 0.92221 0.89890 0.87288 0.87722 0.85062 0.85400 0.85430 0.84647 0.84782 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.10 37.16 0.34 -1.90 16 2 C 0.14 2.20 3.45 -66.95 -0.23 1.97 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.14 -2.06 6.05 -24.90 -0.15 -2.22 16 5 C 0.17 3.04 3.70 -65.78 -0.24 2.80 16 6 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 7 N -0.74 -16.42 5.06 -51.34 -0.26 -16.68 16 8 C -0.25 -6.63 10.46 -15.06 -0.16 -6.78 16 9 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 11 N -0.93 -28.30 13.97 55.49 0.78 -27.53 16 12 Si 0.88 21.90 27.74 -169.99 -4.71 17.19 16 13 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 16 C 0.07 1.12 6.39 -2.53 -0.02 1.10 16 17 N -0.60 -10.19 3.06 -163.02 -0.50 -10.69 16 18 C 0.54 9.68 7.64 -10.98 -0.08 9.60 16 19 O -0.55 -11.31 15.08 5.55 0.08 -11.23 16 20 C -0.09 -1.44 4.56 -29.03 -0.13 -1.57 16 21 C -0.03 -0.46 4.38 -104.51 -0.46 -0.92 16 22 C -0.09 -1.28 9.57 -39.94 -0.38 -1.66 16 23 C -0.11 -1.20 9.95 -39.93 -0.40 -1.60 16 24 C -0.11 -1.15 9.78 -39.52 -0.39 -1.53 16 25 C -0.10 -1.28 5.74 -106.80 -0.61 -1.89 16 26 C -0.06 -0.58 9.90 -39.22 -0.39 -0.97 16 27 C -0.18 -1.62 10.03 -39.77 -0.40 -2.01 16 28 C 0.13 1.38 11.15 -17.47 -0.19 1.18 16 29 N -0.46 -6.69 9.51 -10.98 -0.10 -6.79 16 30 C 0.14 2.12 6.58 -84.86 -0.56 1.56 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.07 6.90 -51.93 -0.36 0.71 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 35 H 0.08 0.96 7.86 -51.93 -0.41 0.56 16 36 H 0.36 8.29 5.70 -40.82 -0.23 8.06 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.44 7.48 -51.93 -0.39 1.05 16 40 H 0.11 1.56 7.72 -51.93 -0.40 1.16 16 41 H 0.10 1.51 7.74 -51.93 -0.40 1.11 16 42 H 0.13 1.66 8.04 -52.48 -0.42 1.24 16 43 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -34.39 386.00 -10.31 -44.70 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.85 Total: 9.86 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -4.55 Total: -4.65 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.09 Total: -61.68 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.39 -10.31 -44.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989268488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.734 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds