Wall clock time and date at job start Tue Mar 31 2020 22:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.99758 * 2 1 4 4 C 1.54325 * 109.88263 * 238.90242 * 2 1 3 5 5 C 1.55154 * 102.94404 * 218.38988 * 4 2 1 6 6 H 1.09002 * 111.00378 * 153.57794 * 5 4 2 7 7 N 1.46508 * 111.00515 * 277.39382 * 5 4 2 8 8 C 1.36928 * 119.99741 * 201.81950 * 7 5 4 9 9 H 1.08005 * 120.00561 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00040 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00172 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99684 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46772 * 90.00534 * 12 10 8 14 14 H 1.48504 * 109.47065 * 210.00385 * 12 10 8 15 15 H 1.48502 * 109.47032 * 330.00423 * 12 10 8 16 16 C 1.54914 * 101.58036 * 35.50280 * 5 4 2 17 17 N 1.47018 * 109.88163 * 121.09724 * 2 1 3 18 18 C 1.34775 * 125.64781 * 298.38135 * 17 2 1 19 19 O 1.21285 * 120.00298 * 359.97438 * 18 17 2 20 20 C 1.50708 * 119.99975 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.46859 * 179.97438 * 20 18 17 22 22 C 1.36118 * 120.12623 * 264.99884 * 21 20 18 23 23 C 1.39314 * 121.06416 * 180.02562 * 22 21 20 24 24 C 1.36169 * 120.87147 * 359.95683 * 23 22 21 25 25 C 1.40391 * 119.61576 * 0.02562 * 24 23 22 26 26 C 1.40777 * 121.38908 * 180.02562 * 25 24 23 27 27 C 1.36575 * 118.14898 * 179.12584 * 26 25 24 28 28 C 1.39336 * 119.93709 * 0.88327 * 27 26 25 29 29 N 1.31078 * 121.75385 * 359.38615 * 28 27 26 30 30 C 1.33689 * 121.31906 * 0.02562 * 29 28 27 31 31 H 1.09000 * 109.46918 * 181.09031 * 1 2 3 32 32 H 1.08997 * 109.47474 * 301.09952 * 1 2 3 33 33 H 1.08999 * 109.46984 * 61.09988 * 1 2 3 34 34 H 1.09011 * 110.71859 * 100.02630 * 4 2 1 35 35 H 1.09004 * 110.87491 * 336.82866 * 4 2 1 36 36 H 0.96995 * 119.99891 * 21.81742 * 7 5 4 37 37 H 0.96997 * 119.99596 * 179.97438 * 11 10 8 38 38 H 1.08998 * 110.36125 * 81.82698 * 16 5 4 39 39 H 1.08994 * 110.36786 * 204.14975 * 16 5 4 40 40 H 1.08991 * 109.47322 * 299.99640 * 20 18 17 41 41 H 1.08997 * 109.46897 * 60.00354 * 20 18 17 42 42 H 1.08004 * 119.46414 * 0.02562 * 22 21 20 43 43 H 1.08003 * 119.55780 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.19093 * 180.02562 * 24 23 22 45 45 H 1.08004 * 120.91920 * 359.97438 * 26 25 24 46 46 H 1.08002 * 120.03404 * 180.27077 * 27 26 25 47 47 H 1.08001 * 119.12417 * 179.41488 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 6 3.2876 -1.5143 -0.6924 6 1 3.4852 -2.4111 -1.2796 7 7 4.4677 -0.6470 -0.6501 8 6 5.7214 -1.1973 -0.6338 9 1 5.8405 -2.2706 -0.6525 10 6 6.8396 -0.3757 -0.5933 11 7 8.0447 -0.9046 -0.5781 12 14 6.6338 1.4807 -0.5617 13 1 6.5486 1.9453 0.8462 14 1 7.7994 2.1193 -1.2241 15 1 5.3897 1.8531 -1.2820 16 6 2.8145 -1.8794 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8075 -0.3619 2.4656 19 8 1.1439 0.6214 2.7180 20 6 2.3834 -1.1901 3.5854 21 6 1.9916 -0.5863 4.9094 22 6 2.8359 0.2710 5.5459 23 6 2.4938 0.8400 6.7707 24 6 1.3026 0.5542 7.3655 25 6 0.4069 -0.3256 6.7373 26 6 -0.8345 -0.6467 7.3185 27 6 -1.6625 -1.4959 6.6413 28 6 -1.2605 -2.0322 5.4198 29 7 -0.1014 -1.7357 4.8842 30 6 0.7508 -0.9021 5.4893 31 1 -0.3633 -1.0275 0.0196 32 1 -0.3634 0.5308 0.8799 33 1 -0.3633 0.4967 -0.8997 34 1 2.3529 -0.0460 -2.0201 35 1 1.3064 -1.4459 -1.6211 36 1 4.3608 0.3169 -0.6338 37 1 8.8260 -0.3304 -0.5501 38 1 2.1886 -2.7715 0.7128 39 1 3.6715 -2.0339 1.3923 40 1 1.9969 -2.2071 3.5210 41 1 3.4700 -1.2082 3.5021 42 1 3.7863 0.5139 5.0941 43 1 3.1824 1.5168 7.2546 44 1 1.0484 1.0019 8.3149 45 1 -1.1297 -0.2222 8.2667 46 1 -2.6239 -1.7593 7.0570 47 1 -1.9217 -2.7098 4.9001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989268488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:26 Heat of formation + Delta-G solvation = 15.851211 kcal Electronic energy + Delta-G solvation = -29435.276077 eV Core-core repulsion = 25582.195666 eV Total energy + Delta-G solvation = -3853.080411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.94204 -41.08012 -38.94762 -37.97537 -35.90144 -35.07708 -33.46585 -33.13217 -31.92966 -31.46992 -30.58179 -28.52367 -26.76274 -25.43504 -25.13050 -24.53099 -23.64195 -22.08768 -21.37349 -19.88230 -19.69467 -19.20551 -18.13089 -17.90077 -17.68929 -17.39568 -16.40371 -16.25850 -15.71941 -15.66828 -15.39554 -15.27294 -15.01021 -14.91250 -14.66910 -14.58624 -14.10990 -13.91805 -13.87808 -13.69654 -13.48554 -13.31603 -13.01826 -12.91386 -12.81127 -12.66846 -12.58023 -12.32596 -12.18467 -12.11883 -11.98843 -11.78397 -11.52889 -11.44912 -11.09847 -10.79456 -10.39777 -9.72455 -9.70376 -9.23682 -9.13771 -8.02788 -5.34885 -0.54365 -0.11185 1.01667 1.34215 1.36760 1.42236 1.67590 1.94959 2.16069 2.45610 3.13061 3.27590 3.38003 3.50406 3.51829 3.59772 3.78321 3.85147 3.88758 3.99950 4.07081 4.07442 4.11471 4.23554 4.33125 4.33602 4.41795 4.45469 4.55290 4.59496 4.67618 4.69750 4.77689 4.85742 4.92664 5.05964 5.06862 5.12401 5.13399 5.15494 5.17799 5.31260 5.43374 5.45653 5.51904 5.62346 5.79712 5.94068 6.22078 6.59494 7.00587 7.06963 7.20946 7.83698 8.00558 9.18272 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.003389 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.461902 B = 8260.632365 C = 9412.906431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.130 3.870 3 H 0.045 0.955 4 C -0.123 4.123 5 C 0.162 3.838 6 H 0.090 0.910 7 N -0.742 5.742 8 C -0.221 4.221 9 H 0.072 0.928 10 C -0.055 4.055 11 N -0.979 5.979 12 Si 0.938 3.062 13 H -0.290 1.290 14 H -0.296 1.296 15 H -0.257 1.257 16 C 0.078 3.922 17 N -0.606 5.606 18 C 0.537 3.463 19 O -0.580 6.580 20 C -0.085 4.085 21 C -0.064 4.064 22 C -0.107 4.107 23 C -0.120 4.120 24 C -0.096 4.096 25 C -0.125 4.125 26 C -0.058 4.058 27 C -0.175 4.175 28 C 0.118 3.882 29 N -0.505 5.505 30 C 0.115 3.885 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.360 0.640 37 H 0.256 0.744 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.127 0.873 43 H 0.154 0.846 44 H 0.165 0.835 45 H 0.173 0.827 46 H 0.174 0.826 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.026 -1.346 14.818 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.063 0.937 4 C -0.162 4.162 5 C 0.053 3.947 6 H 0.108 0.892 7 N -0.384 5.384 8 C -0.352 4.352 9 H 0.090 0.910 10 C -0.247 4.247 11 N -0.629 5.629 12 Si 0.768 3.232 13 H -0.217 1.217 14 H -0.222 1.222 15 H -0.182 1.182 16 C -0.047 4.047 17 N -0.339 5.339 18 C 0.327 3.673 19 O -0.461 6.461 20 C -0.124 4.124 21 C -0.065 4.065 22 C -0.127 4.127 23 C -0.138 4.138 24 C -0.114 4.114 25 C -0.127 4.127 26 C -0.084 4.084 27 C -0.194 4.194 28 C -0.054 4.054 29 N -0.213 5.213 30 C -0.006 4.006 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.193 0.807 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.145 0.855 43 H 0.171 0.829 44 H 0.183 0.817 45 H 0.191 0.809 46 H 0.191 0.809 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -21.864 -1.292 14.168 26.085 hybrid contribution 0.594 1.577 0.612 1.792 sum -21.270 0.285 14.779 25.902 Atomic orbital electron populations 1.21984 0.93695 1.02497 1.02093 1.21581 0.95093 0.95368 0.85239 0.93678 1.23030 0.97396 1.00232 0.95513 1.21598 0.85527 0.94447 0.93169 0.89171 1.42747 1.01851 1.04379 1.89408 1.19074 0.82922 0.92974 1.40201 0.91027 1.25292 0.94993 1.01210 1.03224 1.69838 0.97720 1.35427 1.59952 0.85659 0.77339 0.82683 0.77556 1.21672 1.22230 1.18234 1.23250 0.94592 0.88024 0.98848 1.48556 1.51817 1.28943 1.04562 1.20314 0.79568 0.84660 0.82782 1.90613 1.42095 1.29442 1.83941 1.20442 1.02026 1.00447 0.89515 1.19131 0.93386 0.98650 0.95335 1.21060 0.99918 0.95509 0.96239 1.21182 0.97957 0.99963 0.94711 1.21366 0.92974 0.96376 1.00700 1.19187 0.97740 1.00063 0.95739 1.21894 0.91002 0.95161 1.00353 1.22265 1.02499 0.98573 0.96087 1.23550 0.92140 0.96257 0.93435 1.67948 1.04902 1.14268 1.34227 1.18807 0.93992 0.95315 0.92452 0.91526 0.94418 0.89817 0.89769 0.86750 0.80704 0.93464 0.89030 0.91668 0.86967 0.88039 0.85523 0.82862 0.81746 0.80950 0.80857 0.80239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.10 71.98 0.65 -3.20 16 2 C 0.13 4.01 3.45 45.34 0.16 4.16 16 3 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.12 -3.28 6.05 31.78 0.19 -3.08 16 5 C 0.16 5.40 3.70 46.38 0.17 5.57 16 6 H 0.09 2.89 8.11 -2.39 -0.02 2.87 16 7 N -0.74 -32.62 5.06 -316.35 -1.60 -34.21 16 8 C -0.22 -11.85 10.46 84.04 0.88 -10.97 16 9 H 0.07 4.11 8.06 -2.91 -0.02 4.08 16 10 C -0.06 -3.18 5.50 84.86 0.47 -2.72 16 11 N -0.98 -61.35 13.97 21.65 0.30 -61.04 16 12 Si 0.94 45.98 27.74 68.60 1.90 47.88 16 13 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 14 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 15 H -0.26 -11.59 6.52 99.48 0.65 -10.94 16 16 C 0.08 2.43 6.39 86.86 0.55 2.98 16 17 N -0.61 -20.29 3.06 -788.07 -2.42 -22.70 16 18 C 0.54 19.68 7.64 87.66 0.67 20.35 16 19 O -0.58 -24.77 15.08 -3.04 -0.05 -24.82 16 20 C -0.08 -2.72 4.56 29.10 0.13 -2.59 16 21 C -0.06 -2.02 4.38 -19.79 -0.09 -2.10 16 22 C -0.11 -3.04 9.57 22.04 0.21 -2.83 16 23 C -0.12 -2.66 9.95 22.05 0.22 -2.44 16 24 C -0.10 -1.90 9.78 22.31 0.22 -1.68 16 25 C -0.13 -2.98 5.74 -21.28 -0.12 -3.10 16 26 C -0.06 -0.95 9.90 22.50 0.22 -0.73 16 27 C -0.17 -2.60 10.03 22.15 0.22 -2.38 16 28 C 0.12 2.41 11.15 85.07 0.95 3.36 16 29 N -0.51 -14.58 9.51 -188.64 -1.79 -16.38 16 30 C 0.11 3.46 6.58 40.28 0.27 3.72 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.22 6.90 -2.39 -0.02 1.20 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 2.25 8.14 -2.38 -0.02 2.24 16 35 H 0.11 2.29 7.86 -2.39 -0.02 2.27 16 36 H 0.36 16.16 5.70 -92.71 -0.53 15.63 16 37 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 2.28 7.48 -2.39 -0.02 2.26 16 40 H 0.11 3.39 7.72 -2.39 -0.02 3.37 16 41 H 0.10 3.17 7.74 -2.39 -0.02 3.15 16 42 H 0.13 3.47 8.04 -2.91 -0.02 3.44 16 43 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 44 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 45 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 46 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 47 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -78.46 386.00 2.72 -75.74 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.39 Total: 33.21 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.98 Total: 2.32 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -5.51 Total: -134.34 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.82 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.88 kcal Total: -78.46 2.72 -75.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989268488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.589 kcal (2) G-P(sol) polarization free energy of solvation -78.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds