Wall clock time and date at job start Tue Mar 31 2020 22:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.41449 * 2 1 4 4 C 1.54910 * 110.36931 * 122.29761 * 2 1 3 5 5 C 1.55160 * 101.58360 * 155.84238 * 4 2 1 6 6 H 1.09005 * 110.71373 * 83.03897 * 5 4 2 7 7 N 1.46499 * 110.72282 * 206.13600 * 5 4 2 8 8 C 1.36939 * 119.99933 * 202.83746 * 7 5 4 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 5 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 5 11 11 N 1.31624 * 119.99740 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00044 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47144 * 90.00258 * 12 10 8 14 14 H 1.48500 * 109.47140 * 210.00775 * 12 10 8 15 15 H 1.48502 * 109.46967 * 330.00206 * 12 10 8 16 16 C 1.54322 * 103.10095 * 324.59051 * 5 4 2 17 17 N 1.47322 * 107.12315 * 21.97054 * 16 5 4 18 18 C 1.34766 * 125.61492 * 181.10356 * 17 16 5 19 19 O 1.21733 * 120.00211 * 180.22518 * 18 17 16 20 20 C 1.46396 * 120.00422 * 0.23086 * 18 17 16 21 21 N 1.37630 * 126.32612 * 0.02562 * 20 18 17 22 22 H 0.97007 * 125.54889 * 359.96495 * 21 20 18 23 23 C 1.35644 * 108.90433 * 179.97438 * 21 20 18 24 24 C 1.35125 * 109.21758 * 359.97438 * 23 21 20 25 25 C 1.39091 * 126.33129 * 179.70473 * 20 18 17 26 26 C 1.48188 * 126.63518 * 0.04022 * 25 20 18 27 27 C 1.39445 * 120.12553 * 309.72283 * 26 25 20 28 28 C 1.37992 * 119.86379 * 179.78822 * 27 26 25 29 29 C 1.38340 * 120.13036 * 0.46438 * 28 27 26 30 30 C 1.38343 * 120.26775 * 359.78563 * 29 28 27 31 31 C 1.37992 * 120.12919 * 359.97438 * 30 29 28 32 32 H 1.09007 * 109.46486 * 297.69981 * 1 2 3 33 33 H 1.08989 * 109.47436 * 57.70286 * 1 2 3 34 34 H 1.08997 * 109.47140 * 177.70653 * 1 2 3 35 35 H 1.09002 * 111.00252 * 37.77488 * 4 2 1 36 36 H 1.08993 * 111.00791 * 273.92364 * 4 2 1 37 37 H 0.97001 * 119.99790 * 22.55719 * 7 5 4 38 38 H 0.96998 * 119.99409 * 179.97438 * 11 10 8 39 39 H 1.09004 * 109.87951 * 141.51610 * 16 5 4 40 40 H 1.08994 * 109.88065 * 262.68223 * 16 5 4 41 41 H 1.07997 * 125.39090 * 179.97438 * 23 21 20 42 42 H 1.08000 * 126.09860 * 180.02562 * 24 23 21 43 43 H 1.07997 * 120.06936 * 359.97438 * 27 26 25 44 44 H 1.07994 * 119.93381 * 180.20569 * 28 27 26 45 45 H 1.08005 * 119.87089 * 179.76615 * 29 28 27 46 46 H 1.07996 * 119.93593 * 179.97438 * 30 29 28 47 47 H 1.08000 * 120.06640 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7760 1.2275 5 6 3.4778 -1.1999 0.7340 6 1 4.1952 -0.3914 0.8749 7 7 3.9250 -2.4131 1.4228 8 6 5.2615 -2.6991 1.5075 9 1 5.9856 -2.0326 1.0627 10 6 5.6856 -3.8456 2.1652 11 7 4.8030 -4.6581 2.7069 12 14 7.5087 -4.2361 2.2801 13 1 8.0697 -3.6226 3.5105 14 1 7.6973 -5.7082 2.3307 15 1 8.2082 -3.6881 1.0903 16 6 3.2539 -1.4757 -0.7678 17 7 2.0430 -0.7384 -1.1683 18 6 1.4972 -0.7362 -2.4005 19 8 0.4929 -0.0842 -2.6203 20 6 2.1119 -1.5179 -3.4749 21 7 3.2414 -2.2976 -3.3723 22 1 3.7694 -2.4224 -2.5682 23 6 3.4962 -2.8630 -4.5787 24 6 2.5547 -2.4668 -5.4633 25 6 1.6589 -1.6148 -4.7864 26 6 0.4669 -0.9485 -5.3618 27 6 -0.7658 -1.0399 -4.7162 28 6 -1.8714 -0.4137 -5.2544 29 6 -1.7607 0.2956 -6.4370 30 6 -0.5416 0.3855 -7.0847 31 6 0.5722 -0.2324 -6.5536 32 1 -0.3632 0.4777 0.9100 33 1 -0.3634 0.5490 -0.8686 34 1 -0.3633 -1.0268 -0.0411 35 1 1.4511 -1.6481 1.4407 36 1 2.1399 -0.1266 2.1000 37 1 3.2746 -3.0116 1.8223 38 1 5.0994 -5.4594 3.1661 39 1 4.1121 -1.1248 -1.3410 40 1 3.1080 -2.5434 -0.9308 41 1 4.3210 -3.5249 -4.7975 42 1 2.4966 -2.7549 -6.5025 43 1 -0.8544 -1.5972 -3.7954 44 1 -2.8259 -0.4810 -4.7537 45 1 -2.6296 0.7809 -6.8565 46 1 -0.4613 0.9403 -8.0078 47 1 1.5233 -0.1619 -7.0603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989667708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:54 Heat of formation + Delta-G solvation = 60.040144 kcal Electronic energy + Delta-G solvation = -29368.987295 eV Core-core repulsion = 25517.823060 eV Total energy + Delta-G solvation = -3851.164235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40145 -39.50797 -38.66517 -37.28435 -34.31946 -32.72701 -31.85080 -31.53734 -30.76637 -29.63069 -28.70111 -28.26249 -25.61281 -24.22337 -23.32522 -22.42230 -22.30050 -20.95991 -20.50332 -19.90106 -19.20437 -17.50931 -17.28951 -16.51925 -16.32742 -15.82529 -15.10728 -14.96137 -14.91250 -14.61841 -14.11231 -13.83782 -13.61549 -13.49627 -13.37718 -13.23070 -13.19144 -12.88678 -12.79061 -12.69544 -12.24697 -12.15909 -11.98488 -11.80728 -11.35388 -11.14337 -11.05923 -10.93090 -10.91825 -10.78654 -10.44322 -10.18041 -9.89220 -9.67808 -9.26822 -9.14342 -8.72802 -8.54082 -8.40897 -7.88419 -7.25892 -5.98944 -3.31391 1.14856 1.60251 1.79366 2.76445 3.02030 3.29218 3.29626 3.35116 3.36950 3.49545 4.01382 4.38739 4.62825 4.84998 4.93471 5.03964 5.06660 5.08770 5.14786 5.18045 5.26687 5.35175 5.39534 5.44359 5.47258 5.63278 5.71649 5.73363 5.74078 5.78004 5.85188 5.98283 6.04179 6.07409 6.15237 6.23100 6.30349 6.33821 6.38310 6.51475 6.57761 6.64581 6.69849 6.74517 6.80586 6.97783 7.15207 7.41595 7.48707 7.69579 8.17817 8.34452 9.30155 9.82645 10.17614 11.22513 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.003001 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.037352 B = 9328.226179 C =10617.564067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.074 0.926 4 C -0.137 4.137 5 C 0.175 3.825 6 H 0.069 0.931 7 N -0.712 5.712 8 C -0.257 4.257 9 H 0.073 0.927 10 C -0.005 4.005 11 N -0.926 5.926 12 Si 0.909 3.091 13 H -0.287 1.287 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.060 3.940 17 N -0.611 5.611 18 C 0.598 3.402 19 O -0.525 6.525 20 C -0.032 4.032 21 N -0.536 5.536 22 H 0.426 0.574 23 C 0.021 3.979 24 C -0.199 4.199 25 C -0.055 4.055 26 C -0.009 4.009 27 C -0.064 4.064 28 C -0.125 4.125 29 C -0.124 4.124 30 C -0.131 4.131 31 C -0.107 4.107 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.388 0.612 38 H 0.258 0.742 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.171 0.829 42 H 0.143 0.857 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 7.616 -15.073 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.092 0.908 4 C -0.176 4.176 5 C 0.062 3.938 6 H 0.087 0.913 7 N -0.352 5.352 8 C -0.387 4.387 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.573 5.573 12 Si 0.739 3.261 13 H -0.215 1.215 14 H -0.216 1.216 15 H -0.206 1.206 16 C -0.066 4.066 17 N -0.345 5.345 18 C 0.388 3.612 19 O -0.402 6.402 20 C -0.146 4.146 21 N -0.136 5.136 22 H 0.270 0.730 23 C -0.116 4.116 24 C -0.223 4.223 25 C -0.064 4.064 26 C -0.010 4.010 27 C -0.082 4.082 28 C -0.144 4.144 29 C -0.143 4.143 30 C -0.149 4.149 31 C -0.126 4.126 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.222 0.778 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.188 0.812 42 H 0.160 0.840 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.518 7.909 -15.026 18.997 hybrid contribution 1.353 -0.734 0.599 1.651 sum -7.165 7.176 -14.427 17.634 Atomic orbital electron populations 1.22120 0.94035 1.02690 1.02882 1.21855 0.94982 0.95219 0.84261 0.90848 1.23171 0.97508 1.00458 0.96417 1.21135 0.93596 0.91220 0.87823 0.91265 1.42406 1.05561 1.22993 1.64243 1.19239 0.83408 1.05300 1.30779 0.90919 1.24796 0.97828 0.97410 1.00218 1.69662 1.32474 1.14427 1.40715 0.86186 0.84596 0.77387 0.77936 1.21453 1.21627 1.20634 1.23546 0.85407 0.96158 1.01519 1.48619 1.28412 1.48562 1.08919 1.16653 0.83521 0.80946 0.80106 1.90801 1.24479 1.43638 1.81324 1.20458 0.93668 1.04604 0.95895 1.42866 1.22412 1.36051 1.12262 0.72981 1.21978 1.02296 1.02407 0.84878 1.20839 0.97189 1.04355 0.99913 1.18500 0.96249 1.00698 0.90961 1.18088 0.91457 0.97141 0.94316 1.21123 0.91490 0.97642 0.97944 1.21005 0.98549 0.98570 0.96228 1.21099 0.97438 0.99744 0.95982 1.20945 0.92972 1.00790 1.00161 1.21117 0.98443 0.97566 0.95435 0.92282 0.89891 0.92758 0.90412 0.89919 0.77753 0.93171 0.92433 0.90935 0.81153 0.83964 0.86317 0.86481 0.86689 0.86500 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.59 37.16 0.32 -1.87 16 2 C 0.14 2.00 3.77 -66.42 -0.25 1.75 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.05 6.12 -24.58 -0.15 -2.20 16 5 C 0.17 3.05 3.59 -66.10 -0.24 2.81 16 6 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 7 N -0.71 -15.87 5.16 -51.65 -0.27 -16.14 16 8 C -0.26 -6.41 9.97 -15.06 -0.15 -6.56 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 11 N -0.93 -26.09 13.06 55.49 0.72 -25.36 16 12 Si 0.91 20.80 29.55 -169.99 -5.02 15.78 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.06 0.96 4.88 -2.90 -0.01 0.94 16 17 N -0.61 -9.48 3.25 -164.44 -0.53 -10.01 16 18 C 0.60 9.88 7.57 -12.98 -0.10 9.78 16 19 O -0.53 -9.32 11.15 5.16 0.06 -9.26 16 20 C -0.03 -0.49 6.91 -81.66 -0.56 -1.05 16 21 N -0.54 -7.21 5.61 -9.24 -0.05 -7.26 16 22 H 0.43 5.62 4.91 -40.82 -0.20 5.42 16 23 C 0.02 0.24 11.86 -16.97 -0.20 0.04 16 24 C -0.20 -2.45 10.73 -39.67 -0.43 -2.87 16 25 C -0.06 -0.81 5.67 -104.47 -0.59 -1.40 16 26 C -0.01 -0.14 5.27 -104.91 -0.55 -0.69 16 27 C -0.06 -0.93 7.63 -39.22 -0.30 -1.22 16 28 C -0.13 -1.58 10.03 -39.63 -0.40 -1.98 16 29 C -0.12 -1.41 10.04 -39.51 -0.40 -1.80 16 30 C -0.13 -1.47 10.03 -39.63 -0.40 -1.87 16 31 C -0.11 -1.35 9.74 -39.22 -0.38 -1.74 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.25 6.09 -51.94 -0.32 0.94 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.39 9.38 7.73 -40.82 -0.32 9.06 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 39 H 0.06 0.86 7.26 -51.93 -0.38 0.48 16 40 H 0.07 1.24 6.96 -51.93 -0.36 0.88 16 41 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.12 1.83 7.36 -52.49 -0.39 1.44 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 45 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -29.55 380.39 -10.81 -40.37 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -6.56 Total: 16.32 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -4.89 Total: -10.16 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.13 Total: -58.78 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.06 Total: -9.26 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.55 -10.81 -40.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989667708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.406 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds