Wall clock time and date at job start Tue Mar 31 2020 22:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.41449 * 2 1 4 4 C 1.54910 * 110.36931 * 122.29761 * 2 1 3 5 5 C 1.55160 * 101.58360 * 155.84238 * 4 2 1 6 6 H 1.09005 * 110.71373 * 83.03897 * 5 4 2 7 7 N 1.46499 * 110.72282 * 206.13600 * 5 4 2 8 8 C 1.36939 * 119.99933 * 202.83746 * 7 5 4 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 5 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 5 11 11 N 1.31624 * 119.99740 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00044 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47144 * 90.00258 * 12 10 8 14 14 H 1.48500 * 109.47140 * 210.00775 * 12 10 8 15 15 H 1.48502 * 109.46967 * 330.00206 * 12 10 8 16 16 C 1.54322 * 103.10095 * 324.59051 * 5 4 2 17 17 N 1.47322 * 107.12315 * 21.97054 * 16 5 4 18 18 C 1.34766 * 125.61492 * 181.10356 * 17 16 5 19 19 O 1.21733 * 120.00211 * 180.22518 * 18 17 16 20 20 C 1.46396 * 120.00422 * 0.23086 * 18 17 16 21 21 N 1.37630 * 126.32612 * 0.02562 * 20 18 17 22 22 H 0.97007 * 125.54889 * 359.96495 * 21 20 18 23 23 C 1.35644 * 108.90433 * 179.97438 * 21 20 18 24 24 C 1.35125 * 109.21758 * 359.97438 * 23 21 20 25 25 C 1.39091 * 126.33129 * 179.70473 * 20 18 17 26 26 C 1.48188 * 126.63518 * 0.04022 * 25 20 18 27 27 C 1.39445 * 120.12553 * 309.72283 * 26 25 20 28 28 C 1.37992 * 119.86379 * 179.78822 * 27 26 25 29 29 C 1.38340 * 120.13036 * 0.46438 * 28 27 26 30 30 C 1.38343 * 120.26775 * 359.78563 * 29 28 27 31 31 C 1.37992 * 120.12919 * 359.97438 * 30 29 28 32 32 H 1.09007 * 109.46486 * 297.69981 * 1 2 3 33 33 H 1.08989 * 109.47436 * 57.70286 * 1 2 3 34 34 H 1.08997 * 109.47140 * 177.70653 * 1 2 3 35 35 H 1.09002 * 111.00252 * 37.77488 * 4 2 1 36 36 H 1.08993 * 111.00791 * 273.92364 * 4 2 1 37 37 H 0.97001 * 119.99790 * 22.55719 * 7 5 4 38 38 H 0.96998 * 119.99409 * 179.97438 * 11 10 8 39 39 H 1.09004 * 109.87951 * 141.51610 * 16 5 4 40 40 H 1.08994 * 109.88065 * 262.68223 * 16 5 4 41 41 H 1.07997 * 125.39090 * 179.97438 * 23 21 20 42 42 H 1.08000 * 126.09860 * 180.02562 * 24 23 21 43 43 H 1.07997 * 120.06936 * 359.97438 * 27 26 25 44 44 H 1.07994 * 119.93381 * 180.20569 * 28 27 26 45 45 H 1.08005 * 119.87089 * 179.76615 * 29 28 27 46 46 H 1.07996 * 119.93593 * 179.97438 * 30 29 28 47 47 H 1.08000 * 120.06640 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7760 1.2275 5 6 3.4778 -1.1999 0.7340 6 1 4.1952 -0.3914 0.8749 7 7 3.9250 -2.4131 1.4228 8 6 5.2615 -2.6991 1.5075 9 1 5.9856 -2.0326 1.0627 10 6 5.6856 -3.8456 2.1652 11 7 4.8030 -4.6581 2.7069 12 14 7.5087 -4.2361 2.2801 13 1 8.0697 -3.6226 3.5105 14 1 7.6973 -5.7082 2.3307 15 1 8.2082 -3.6881 1.0903 16 6 3.2539 -1.4757 -0.7678 17 7 2.0430 -0.7384 -1.1683 18 6 1.4972 -0.7362 -2.4005 19 8 0.4929 -0.0842 -2.6203 20 6 2.1119 -1.5179 -3.4749 21 7 3.2414 -2.2976 -3.3723 22 1 3.7694 -2.4224 -2.5682 23 6 3.4962 -2.8630 -4.5787 24 6 2.5547 -2.4668 -5.4633 25 6 1.6589 -1.6148 -4.7864 26 6 0.4669 -0.9485 -5.3618 27 6 -0.7658 -1.0399 -4.7162 28 6 -1.8714 -0.4137 -5.2544 29 6 -1.7607 0.2956 -6.4370 30 6 -0.5416 0.3855 -7.0847 31 6 0.5722 -0.2324 -6.5536 32 1 -0.3632 0.4777 0.9100 33 1 -0.3634 0.5490 -0.8686 34 1 -0.3633 -1.0268 -0.0411 35 1 1.4511 -1.6481 1.4407 36 1 2.1399 -0.1266 2.1000 37 1 3.2746 -3.0116 1.8223 38 1 5.0994 -5.4594 3.1661 39 1 4.1121 -1.1248 -1.3410 40 1 3.1080 -2.5434 -0.9308 41 1 4.3210 -3.5249 -4.7975 42 1 2.4966 -2.7549 -6.5025 43 1 -0.8544 -1.5972 -3.7954 44 1 -2.8259 -0.4810 -4.7537 45 1 -2.6296 0.7809 -6.8565 46 1 -0.4613 0.9403 -8.0078 47 1 1.5233 -0.1619 -7.0603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989667708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:53 Heat of formation + Delta-G solvation = 44.703977 kcal Electronic energy + Delta-G solvation = -29369.652321 eV Core-core repulsion = 25517.823060 eV Total energy + Delta-G solvation = -3851.829261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.46483 -40.72459 -39.61602 -38.61070 -36.00672 -33.80229 -33.25407 -32.97285 -31.71521 -30.63445 -30.19806 -29.40199 -26.84968 -25.93485 -24.56350 -23.44794 -23.31211 -22.14695 -21.76617 -21.05681 -20.22138 -19.27203 -18.51332 -17.73930 -17.38086 -17.08165 -16.50127 -16.22433 -15.95345 -15.75577 -15.46873 -15.39849 -14.93833 -14.64823 -14.54222 -14.34250 -14.30807 -14.16547 -13.79756 -13.66791 -13.53179 -13.34606 -13.12926 -13.07728 -12.94087 -12.83195 -12.43221 -12.19119 -12.12019 -11.97945 -11.86915 -11.78098 -11.59000 -11.07838 -10.81901 -10.27780 -9.77776 -9.67693 -9.42293 -9.12276 -8.92969 -7.97678 -5.28794 0.09837 0.63863 0.77811 1.49102 1.50208 1.57860 1.79136 1.84245 2.23369 2.31090 2.54292 3.04348 3.32535 3.39161 3.74636 3.78625 3.84837 3.92601 4.10259 4.13232 4.19025 4.21030 4.29453 4.35746 4.41157 4.43919 4.46238 4.56824 4.66634 4.70046 4.77013 4.79630 4.80535 5.04676 5.05674 5.12858 5.18174 5.25573 5.27223 5.27763 5.48756 5.51586 5.57755 5.70112 5.74326 5.81931 5.95399 6.21584 6.22204 6.40603 6.46374 7.10675 7.30499 8.00345 8.24740 9.24895 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.003001 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.037352 B = 9328.226179 C =10617.564067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.139 3.861 3 H 0.087 0.913 4 C -0.125 4.125 5 C 0.169 3.831 6 H 0.076 0.924 7 N -0.723 5.723 8 C -0.245 4.245 9 H 0.083 0.917 10 C -0.068 4.068 11 N -0.966 5.966 12 Si 0.969 3.031 13 H -0.290 1.290 14 H -0.300 1.300 15 H -0.265 1.265 16 C 0.076 3.924 17 N -0.612 5.612 18 C 0.592 3.408 19 O -0.544 6.544 20 C -0.069 4.069 21 N -0.539 5.539 22 H 0.425 0.575 23 C 0.035 3.965 24 C -0.207 4.207 25 C -0.062 4.062 26 C -0.032 4.032 27 C -0.085 4.085 28 C -0.136 4.136 29 C -0.124 4.124 30 C -0.129 4.129 31 C -0.115 4.115 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.376 0.624 38 H 0.251 0.749 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.208 0.792 42 H 0.165 0.835 43 H 0.096 0.904 44 H 0.130 0.870 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 8.931 -17.103 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.164 4.164 5 C 0.059 3.941 6 H 0.094 0.906 7 N -0.362 5.362 8 C -0.376 4.376 9 H 0.101 0.899 10 C -0.261 4.261 11 N -0.616 5.616 12 Si 0.798 3.202 13 H -0.217 1.217 14 H -0.227 1.227 15 H -0.190 1.190 16 C -0.051 4.051 17 N -0.346 5.346 18 C 0.384 3.616 19 O -0.423 6.423 20 C -0.182 4.182 21 N -0.139 5.139 22 H 0.269 0.731 23 C -0.102 4.102 24 C -0.230 4.230 25 C -0.071 4.071 26 C -0.033 4.033 27 C -0.104 4.104 28 C -0.154 4.154 29 C -0.142 4.142 30 C -0.147 4.147 31 C -0.133 4.133 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.208 0.792 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.225 0.775 42 H 0.183 0.817 43 H 0.114 0.886 44 H 0.148 0.852 45 H 0.162 0.838 46 H 0.166 0.834 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.905 9.279 -17.085 20.988 hybrid contribution 1.078 -1.069 1.120 1.887 sum -6.827 8.210 -15.965 19.206 Atomic orbital electron populations 1.22012 0.93547 1.01776 1.03387 1.21961 0.95367 0.95568 0.83425 0.89527 1.23080 0.95619 1.00377 0.97318 1.21315 0.94999 0.89520 0.88299 0.90640 1.42524 1.04559 1.24244 1.64841 1.19635 0.84730 1.04598 1.28651 0.89872 1.25525 1.01364 0.97971 1.01210 1.69813 1.34095 1.14990 1.42686 0.85216 0.80510 0.76344 0.78113 1.21748 1.22710 1.18980 1.23201 0.86072 0.95510 1.00298 1.48632 1.28270 1.48595 1.09124 1.16887 0.83372 0.80911 0.80476 1.90782 1.25225 1.44572 1.81693 1.20422 0.95202 1.06473 0.96119 1.42873 1.21980 1.36093 1.12905 0.73097 1.22644 1.02519 1.01285 0.83720 1.21160 0.96779 1.03946 1.01108 1.18848 0.96513 1.00696 0.91047 1.18293 0.91352 0.98282 0.95366 1.21068 0.92705 0.98860 0.97732 1.21245 0.98539 0.98552 0.97027 1.21469 0.98664 0.98873 0.95175 1.21346 0.92361 1.00018 1.00945 1.21356 0.99720 0.97319 0.94871 0.89928 0.91300 0.94171 0.91534 0.88187 0.79179 0.94010 0.91268 0.92318 0.77546 0.81718 0.88619 0.85238 0.83761 0.83441 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 8.59 71.98 0.62 -3.45 16 2 C 0.14 3.90 3.77 45.47 0.17 4.07 16 3 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.13 -3.66 6.12 31.99 0.20 -3.46 16 5 C 0.17 5.79 3.59 46.18 0.17 5.96 16 6 H 0.08 2.52 8.11 -2.38 -0.02 2.50 16 7 N -0.72 -32.24 5.16 -317.32 -1.64 -33.88 16 8 C -0.24 -12.10 9.97 84.03 0.84 -11.26 16 9 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 10 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 11 N -0.97 -55.50 13.06 21.65 0.28 -55.22 16 12 Si 0.97 42.75 29.55 68.60 2.03 44.78 16 13 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 14 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 15 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 16 C 0.08 2.37 4.88 86.67 0.42 2.80 16 17 N -0.61 -19.04 3.25 -792.38 -2.57 -21.61 16 18 C 0.59 20.02 7.57 86.37 0.65 20.67 16 19 O -0.54 -19.93 11.15 -4.45 -0.05 -19.98 16 20 C -0.07 -2.14 6.91 40.56 0.28 -1.86 16 21 N -0.54 -14.16 5.61 -183.14 -1.03 -15.19 16 22 H 0.42 10.99 4.91 -92.70 -0.46 10.54 16 23 C 0.03 0.73 11.86 83.39 0.99 1.72 16 24 C -0.21 -4.77 10.73 22.21 0.24 -4.53 16 25 C -0.06 -1.80 5.67 -19.77 -0.11 -1.92 16 26 C -0.03 -0.94 5.27 -20.05 -0.11 -1.04 16 27 C -0.09 -2.55 7.63 22.50 0.17 -2.38 16 28 C -0.14 -3.37 10.03 22.24 0.22 -3.15 16 29 C -0.12 -2.55 10.04 22.32 0.22 -2.33 16 30 C -0.13 -2.60 10.03 22.24 0.22 -2.37 16 31 C -0.11 -2.73 9.74 22.50 0.22 -2.52 16 32 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.07 2.10 6.09 -2.39 -0.01 2.09 16 34 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 2.12 7.92 -2.39 -0.02 2.10 16 36 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.38 18.52 7.73 -92.71 -0.72 17.80 16 38 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 39 H 0.07 2.01 7.26 -2.38 -0.02 1.99 16 40 H 0.06 2.03 6.96 -2.39 -0.02 2.01 16 41 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16 42 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 43 H 0.10 3.20 7.36 -2.91 -0.02 3.18 16 44 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 47 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -64.98 380.39 2.73 -62.25 By element: Atomic # 1 Polarization: 47.18 SS G_CDS: -0.17 Total: 47.01 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 5.88 Total: -8.16 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -4.96 Total: -125.89 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.05 Total: -19.98 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -64.98 2.73 -62.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989667708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.949 kcal (2) G-P(sol) polarization free energy of solvation -64.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds