Wall clock time and date at job start Tue Mar 31 2020 22:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.33191 * 2 1 4 4 C 1.55130 * 110.42015 * 237.81530 * 2 1 3 5 5 C 1.55154 * 101.48638 * 204.29200 * 4 2 1 6 6 H 1.09000 * 110.72333 * 276.82922 * 5 4 2 7 7 N 1.46505 * 110.71768 * 153.73300 * 5 4 2 8 8 C 1.36931 * 119.99788 * 157.44257 * 7 5 4 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 5 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48508 * 109.46872 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47141 * 119.99997 * 12 10 8 15 15 H 1.48498 * 109.47018 * 240.00044 * 12 10 8 16 16 C 1.54324 * 103.10250 * 35.28336 * 5 4 2 17 17 N 1.47025 * 107.27206 * 337.89245 * 16 5 4 18 18 C 1.34774 * 125.64999 * 178.90305 * 17 16 5 19 19 O 1.21736 * 120.00051 * 180.02562 * 18 17 16 20 20 C 1.46395 * 120.00066 * 0.02794 * 18 17 16 21 21 N 1.37629 * 126.32501 * 0.02562 * 20 18 17 22 22 H 0.96999 * 125.55515 * 359.95907 * 21 20 18 23 23 C 1.35646 * 108.89633 * 179.97438 * 21 20 18 24 24 C 1.35121 * 109.22450 * 359.97438 * 23 21 20 25 25 C 1.39096 * 126.32611 * 179.71237 * 20 18 17 26 26 C 1.48177 * 126.63553 * 0.02983 * 25 20 18 27 27 C 1.39443 * 120.13181 * 309.72505 * 26 25 20 28 28 C 1.37990 * 119.86672 * 179.78921 * 27 26 25 29 29 C 1.38343 * 120.13072 * 0.46581 * 28 27 26 30 30 C 1.38338 * 120.26287 * 359.78890 * 29 28 27 31 31 C 1.37988 * 120.13542 * 359.97438 * 30 29 28 32 32 H 1.09001 * 109.46840 * 299.21772 * 1 2 3 33 33 H 1.09000 * 109.46990 * 59.21108 * 1 2 3 34 34 H 1.09002 * 109.47223 * 179.21261 * 1 2 3 35 35 H 1.09004 * 111.16111 * 86.19862 * 4 2 1 36 36 H 1.08998 * 110.93481 * 322.28886 * 4 2 1 37 37 H 0.97000 * 119.99792 * 337.44052 * 7 5 4 38 38 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 39 39 H 1.09002 * 109.88623 * 97.30606 * 16 5 4 40 40 H 1.08995 * 109.88305 * 218.32143 * 16 5 4 41 41 H 1.07999 * 125.38656 * 180.02562 * 23 21 20 42 42 H 1.08000 * 126.10302 * 180.02562 * 24 23 21 43 43 H 1.08009 * 120.06793 * 0.02562 * 27 26 25 44 44 H 1.08000 * 119.93295 * 180.25750 * 28 27 26 45 45 H 1.07996 * 119.86637 * 179.76559 * 29 28 27 46 46 H 1.08002 * 119.93199 * 180.02562 * 30 29 28 47 47 H 1.08002 * 120.06255 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0712 -0.7744 -1.2304 5 6 3.4778 -1.2004 -0.7331 6 1 4.1968 -0.3931 -0.8719 7 7 3.9249 -2.4143 -1.4208 8 6 5.2608 -2.7053 -1.4970 9 1 5.9848 -2.0403 -1.0497 10 6 5.6841 -3.8584 -2.1436 11 7 4.8018 -4.6691 -2.6881 12 14 7.5060 -4.2594 -2.2408 13 1 8.2841 -3.1959 -1.5561 14 1 7.7616 -5.5642 -1.5795 15 1 7.9206 -4.3365 -3.6647 16 6 3.2494 -1.4761 0.7681 17 7 2.0431 -0.7373 1.1690 18 6 1.4965 -0.7351 2.4009 19 8 0.4916 -0.0838 2.6198 20 6 2.1112 -1.5160 3.4759 21 7 3.2419 -2.2940 3.3744 22 1 3.7704 -2.4188 2.5706 23 6 3.4968 -2.8581 4.5814 24 6 2.5548 -2.4620 5.4654 25 6 1.6638 -1.6038 4.7900 26 6 0.4782 -0.9282 5.3675 27 6 0.2949 0.4419 5.1841 28 6 -0.8135 1.0647 5.7206 29 6 -1.7367 0.3344 6.4473 30 6 -1.5574 -1.0241 6.6370 31 6 -0.4556 -1.6589 6.1013 32 1 -0.3633 0.5016 0.8969 33 1 -0.3633 0.5260 -0.8828 34 1 -0.3634 -1.0276 -0.0141 35 1 2.1453 -0.1249 -2.1027 36 1 1.4523 -1.6455 -1.4454 37 1 3.2747 -3.0118 -1.8221 38 1 5.0977 -5.4747 -3.1403 39 1 3.1013 -2.5437 0.9307 40 1 4.1076 -1.1292 1.3434 41 1 4.3225 -3.5186 4.8011 42 1 2.4972 -2.7486 6.5051 43 1 1.0169 1.0138 4.6201 44 1 -0.9587 2.1251 5.5757 45 1 -2.6006 0.8269 6.8685 46 1 -2.2818 -1.5892 7.2049 47 1 -0.3170 -2.7197 6.2497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989667712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:58 Heat of formation + Delta-G solvation = 60.299399 kcal Electronic energy + Delta-G solvation = -29362.067211 eV Core-core repulsion = 25510.914218 eV Total energy + Delta-G solvation = -3851.152993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.40614 -39.51672 -38.66731 -37.28792 -34.32165 -32.72723 -31.85976 -31.53564 -30.76719 -29.63207 -28.70123 -28.26405 -25.61002 -24.22124 -23.32478 -22.43074 -22.30348 -20.95706 -20.50442 -19.91019 -19.20991 -17.50311 -17.28847 -16.59306 -16.23442 -15.85409 -15.17786 -15.01939 -14.80743 -14.52510 -14.22002 -13.83032 -13.62620 -13.51335 -13.35486 -13.28153 -13.13438 -12.87284 -12.79540 -12.70975 -12.23427 -12.16493 -11.97427 -11.81592 -11.35643 -11.15218 -11.06105 -10.93935 -10.91840 -10.78338 -10.43381 -10.16264 -9.89613 -9.65123 -9.27199 -9.14663 -8.72903 -8.54453 -8.40763 -7.88448 -7.25852 -5.99051 -3.31432 1.14704 1.60075 1.78999 2.76399 3.01741 3.28764 3.29614 3.35242 3.37523 3.49149 4.01110 4.38601 4.63016 4.84939 4.93386 5.04059 5.06462 5.08564 5.14617 5.18014 5.26279 5.34932 5.39452 5.44637 5.47441 5.63056 5.71456 5.73441 5.74168 5.78882 5.85506 5.98957 6.04332 6.07154 6.15106 6.22763 6.30570 6.33866 6.38841 6.51452 6.59437 6.64199 6.70746 6.74255 6.80497 6.97495 7.14934 7.41434 7.49120 7.69741 8.17585 8.34102 9.30063 9.82660 10.17609 11.22452 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.003002 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.734171 B = 9323.809470 C =10579.909337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.074 0.926 4 C -0.137 4.137 5 C 0.175 3.825 6 H 0.070 0.930 7 N -0.712 5.712 8 C -0.256 4.256 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.926 5.926 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.289 1.289 16 C 0.060 3.940 17 N -0.610 5.610 18 C 0.598 3.402 19 O -0.525 6.525 20 C -0.032 4.032 21 N -0.536 5.536 22 H 0.426 0.574 23 C 0.021 3.979 24 C -0.199 4.199 25 C -0.055 4.055 26 C -0.009 4.009 27 C -0.064 4.064 28 C -0.126 4.126 29 C -0.124 4.124 30 C -0.130 4.130 31 C -0.107 4.107 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.388 0.612 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.171 0.829 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 8.060 15.186 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.092 0.908 4 C -0.175 4.175 5 C 0.062 3.938 6 H 0.088 0.912 7 N -0.352 5.352 8 C -0.387 4.387 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.572 5.572 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.216 1.216 16 C -0.067 4.067 17 N -0.344 5.344 18 C 0.388 3.612 19 O -0.402 6.402 20 C -0.146 4.146 21 N -0.136 5.136 22 H 0.270 0.730 23 C -0.116 4.116 24 C -0.223 4.223 25 C -0.064 4.064 26 C -0.010 4.010 27 C -0.083 4.083 28 C -0.144 4.144 29 C -0.143 4.143 30 C -0.148 4.148 31 C -0.125 4.125 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.222 0.778 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.188 0.812 42 H 0.160 0.840 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.249 8.366 15.135 19.160 hybrid contribution 1.271 -0.866 -0.619 1.658 sum -6.978 7.500 14.517 17.767 Atomic orbital electron populations 1.22163 0.94053 1.02603 1.03236 1.21891 0.94972 0.95205 0.84245 0.90837 1.23209 0.97487 1.00470 0.96382 1.21138 0.93607 0.91224 0.87784 0.91246 1.42417 1.05629 1.22998 1.64175 1.19281 0.83462 1.04948 1.30970 0.90860 1.24799 0.97830 0.97352 1.00302 1.69669 1.32422 1.14205 1.40944 0.86125 0.84569 0.77936 0.77536 1.20411 1.21696 1.21617 1.23492 0.85485 0.96158 1.01535 1.48528 1.28450 1.48512 1.08934 1.16654 0.83439 0.80955 0.80145 1.90790 1.24362 1.43702 1.81370 1.20456 0.93528 1.04794 0.95852 1.42863 1.22158 1.36308 1.12253 0.72979 1.21978 1.02327 1.02393 0.84853 1.20839 0.97516 1.04014 0.99925 1.18499 0.96426 1.00541 0.90933 1.18085 0.93011 0.92800 0.97085 1.21106 0.97269 0.93674 0.96221 1.20999 0.94895 0.99729 0.98764 1.21097 0.99142 0.94386 0.99639 1.20950 0.97938 0.94817 1.01107 1.21130 0.94104 0.99469 0.97819 0.89597 0.92298 0.92801 0.89881 0.90434 0.77755 0.93220 0.91009 0.92466 0.81151 0.83959 0.86369 0.86507 0.86686 0.86476 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.71 37.16 0.32 -1.95 16 2 C 0.14 2.00 3.76 -66.30 -0.25 1.75 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.05 6.15 -24.46 -0.15 -2.21 16 5 C 0.18 3.06 3.59 -66.09 -0.24 2.82 16 6 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 7 N -0.71 -15.91 5.16 -51.65 -0.27 -16.18 16 8 C -0.26 -6.39 9.97 -15.06 -0.15 -6.54 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 11 N -0.93 -26.11 13.06 55.49 0.72 -25.39 16 12 Si 0.91 20.80 29.55 -169.99 -5.02 15.77 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 C 0.06 0.95 4.87 -3.06 -0.01 0.94 16 17 N -0.61 -9.47 3.24 -164.54 -0.53 -10.01 16 18 C 0.60 9.88 7.57 -12.98 -0.10 9.78 16 19 O -0.52 -9.30 11.08 5.16 0.06 -9.25 16 20 C -0.03 -0.49 6.91 -81.66 -0.56 -1.05 16 21 N -0.54 -7.21 5.61 -9.24 -0.05 -7.26 16 22 H 0.43 5.61 4.91 -40.82 -0.20 5.41 16 23 C 0.02 0.24 11.86 -16.97 -0.20 0.04 16 24 C -0.20 -2.44 10.73 -39.67 -0.43 -2.87 16 25 C -0.06 -0.81 5.67 -104.47 -0.59 -1.40 16 26 C -0.01 -0.13 5.27 -104.92 -0.55 -0.69 16 27 C -0.06 -0.92 7.63 -39.22 -0.30 -1.22 16 28 C -0.13 -1.56 10.03 -39.63 -0.40 -1.96 16 29 C -0.12 -1.41 10.04 -39.51 -0.40 -1.80 16 30 C -0.13 -1.48 10.03 -39.64 -0.40 -1.88 16 31 C -0.11 -1.37 9.74 -39.22 -0.38 -1.75 16 32 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.24 7.92 -51.93 -0.41 0.83 16 37 H 0.39 9.41 7.73 -40.82 -0.32 9.10 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.07 1.24 6.97 -51.93 -0.36 0.87 16 40 H 0.06 0.85 7.23 -51.93 -0.38 0.47 16 41 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.12 1.76 7.36 -52.48 -0.39 1.38 16 44 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -29.62 380.23 -10.80 -40.41 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -6.55 Total: 16.38 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -4.88 Total: -10.23 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.13 Total: -58.83 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.06 Total: -9.25 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.62 -10.80 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989667712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.714 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds