Wall clock time and date at job start Tue Mar 31 2020 22:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.33191 * 2 1 4 4 C 1.55130 * 110.42015 * 237.81530 * 2 1 3 5 5 C 1.55154 * 101.48638 * 204.29200 * 4 2 1 6 6 H 1.09000 * 110.72333 * 276.82922 * 5 4 2 7 7 N 1.46505 * 110.71768 * 153.73300 * 5 4 2 8 8 C 1.36931 * 119.99788 * 157.44257 * 7 5 4 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 5 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48508 * 109.46872 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47141 * 119.99997 * 12 10 8 15 15 H 1.48498 * 109.47018 * 240.00044 * 12 10 8 16 16 C 1.54324 * 103.10250 * 35.28336 * 5 4 2 17 17 N 1.47025 * 107.27206 * 337.89245 * 16 5 4 18 18 C 1.34774 * 125.64999 * 178.90305 * 17 16 5 19 19 O 1.21736 * 120.00051 * 180.02562 * 18 17 16 20 20 C 1.46395 * 120.00066 * 0.02794 * 18 17 16 21 21 N 1.37629 * 126.32501 * 0.02562 * 20 18 17 22 22 H 0.96999 * 125.55515 * 359.95907 * 21 20 18 23 23 C 1.35646 * 108.89633 * 179.97438 * 21 20 18 24 24 C 1.35121 * 109.22450 * 359.97438 * 23 21 20 25 25 C 1.39096 * 126.32611 * 179.71237 * 20 18 17 26 26 C 1.48177 * 126.63553 * 0.02983 * 25 20 18 27 27 C 1.39443 * 120.13181 * 309.72505 * 26 25 20 28 28 C 1.37990 * 119.86672 * 179.78921 * 27 26 25 29 29 C 1.38343 * 120.13072 * 0.46581 * 28 27 26 30 30 C 1.38338 * 120.26287 * 359.78890 * 29 28 27 31 31 C 1.37988 * 120.13542 * 359.97438 * 30 29 28 32 32 H 1.09001 * 109.46840 * 299.21772 * 1 2 3 33 33 H 1.09000 * 109.46990 * 59.21108 * 1 2 3 34 34 H 1.09002 * 109.47223 * 179.21261 * 1 2 3 35 35 H 1.09004 * 111.16111 * 86.19862 * 4 2 1 36 36 H 1.08998 * 110.93481 * 322.28886 * 4 2 1 37 37 H 0.97000 * 119.99792 * 337.44052 * 7 5 4 38 38 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 39 39 H 1.09002 * 109.88623 * 97.30606 * 16 5 4 40 40 H 1.08995 * 109.88305 * 218.32143 * 16 5 4 41 41 H 1.07999 * 125.38656 * 180.02562 * 23 21 20 42 42 H 1.08000 * 126.10302 * 180.02562 * 24 23 21 43 43 H 1.08009 * 120.06793 * 0.02562 * 27 26 25 44 44 H 1.08000 * 119.93295 * 180.25750 * 28 27 26 45 45 H 1.07996 * 119.86637 * 179.76559 * 29 28 27 46 46 H 1.08002 * 119.93199 * 180.02562 * 30 29 28 47 47 H 1.08002 * 120.06255 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0712 -0.7744 -1.2304 5 6 3.4778 -1.2004 -0.7331 6 1 4.1968 -0.3931 -0.8719 7 7 3.9249 -2.4143 -1.4208 8 6 5.2608 -2.7053 -1.4970 9 1 5.9848 -2.0403 -1.0497 10 6 5.6841 -3.8584 -2.1436 11 7 4.8018 -4.6691 -2.6881 12 14 7.5060 -4.2594 -2.2408 13 1 8.2841 -3.1959 -1.5561 14 1 7.7616 -5.5642 -1.5795 15 1 7.9206 -4.3365 -3.6647 16 6 3.2494 -1.4761 0.7681 17 7 2.0431 -0.7373 1.1690 18 6 1.4965 -0.7351 2.4009 19 8 0.4916 -0.0838 2.6198 20 6 2.1112 -1.5160 3.4759 21 7 3.2419 -2.2940 3.3744 22 1 3.7704 -2.4188 2.5706 23 6 3.4968 -2.8581 4.5814 24 6 2.5548 -2.4620 5.4654 25 6 1.6638 -1.6038 4.7900 26 6 0.4782 -0.9282 5.3675 27 6 0.2949 0.4419 5.1841 28 6 -0.8135 1.0647 5.7206 29 6 -1.7367 0.3344 6.4473 30 6 -1.5574 -1.0241 6.6370 31 6 -0.4556 -1.6589 6.1013 32 1 -0.3633 0.5016 0.8969 33 1 -0.3633 0.5260 -0.8828 34 1 -0.3634 -1.0276 -0.0141 35 1 2.1453 -0.1249 -2.1027 36 1 1.4523 -1.6455 -1.4454 37 1 3.2747 -3.0118 -1.8221 38 1 5.0977 -5.4747 -3.1403 39 1 3.1013 -2.5437 0.9307 40 1 4.1076 -1.1292 1.3434 41 1 4.3225 -3.5186 4.8011 42 1 2.4972 -2.7486 6.5051 43 1 1.0169 1.0138 4.6201 44 1 -0.9587 2.1251 5.5757 45 1 -2.6006 0.8269 6.8685 46 1 -2.2818 -1.5892 7.2049 47 1 -0.3170 -2.7197 6.2497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989667712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:57 Heat of formation + Delta-G solvation = 44.931471 kcal Electronic energy + Delta-G solvation = -29362.733614 eV Core-core repulsion = 25510.914218 eV Total energy + Delta-G solvation = -3851.819397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.46949 -40.73234 -39.61519 -38.61326 -36.00945 -33.80376 -33.25349 -32.98014 -31.71327 -30.63579 -30.19811 -29.40442 -26.85023 -25.93531 -24.56069 -23.45789 -23.31043 -22.14506 -21.76523 -21.06687 -20.22479 -19.27298 -18.50453 -17.79253 -17.29386 -17.11297 -16.51814 -16.30070 -15.89755 -15.65811 -15.51478 -15.41261 -15.00450 -14.64957 -14.51096 -14.34049 -14.33701 -14.13382 -13.79587 -13.69229 -13.51150 -13.34406 -13.12449 -13.09671 -12.94438 -12.86932 -12.40660 -12.19252 -12.09362 -11.97925 -11.86679 -11.78315 -11.59074 -11.08729 -10.79618 -10.27969 -9.77759 -9.67109 -9.42361 -9.13083 -8.92404 -7.97818 -5.28868 0.09831 0.63973 0.77584 1.48156 1.50128 1.58679 1.79505 1.83719 2.23253 2.30911 2.54114 3.04344 3.32457 3.39176 3.74386 3.78876 3.84551 3.92547 4.10128 4.13230 4.19411 4.20900 4.29413 4.35901 4.41078 4.43816 4.46245 4.57029 4.66780 4.70146 4.77004 4.79685 4.80568 5.04461 5.05932 5.12717 5.18145 5.25688 5.27489 5.27796 5.50143 5.51912 5.57749 5.70151 5.74101 5.81995 5.95194 6.21636 6.22131 6.40597 6.46432 7.10423 7.30412 8.00240 8.24607 9.24960 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.003002 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.734171 B = 9323.809470 C =10579.909337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.125 4.125 5 C 0.170 3.830 6 H 0.076 0.924 7 N -0.723 5.723 8 C -0.243 4.243 9 H 0.084 0.916 10 C -0.068 4.068 11 N -0.966 5.966 12 Si 0.968 3.032 13 H -0.263 1.263 14 H -0.296 1.296 15 H -0.298 1.298 16 C 0.075 3.925 17 N -0.611 5.611 18 C 0.593 3.407 19 O -0.543 6.543 20 C -0.068 4.068 21 N -0.538 5.538 22 H 0.425 0.575 23 C 0.035 3.965 24 C -0.207 4.207 25 C -0.061 4.061 26 C -0.033 4.033 27 C -0.084 4.084 28 C -0.135 4.135 29 C -0.124 4.124 30 C -0.130 4.130 31 C -0.117 4.117 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.376 0.624 38 H 0.251 0.749 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.208 0.792 42 H 0.165 0.835 43 H 0.100 0.900 44 H 0.132 0.868 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 8.728 16.856 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.164 4.164 5 C 0.059 3.941 6 H 0.094 0.906 7 N -0.362 5.362 8 C -0.375 4.375 9 H 0.102 0.898 10 C -0.261 4.261 11 N -0.616 5.616 12 Si 0.798 3.202 13 H -0.187 1.187 14 H -0.223 1.223 15 H -0.226 1.226 16 C -0.051 4.051 17 N -0.345 5.345 18 C 0.384 3.616 19 O -0.422 6.422 20 C -0.182 4.182 21 N -0.138 5.138 22 H 0.269 0.731 23 C -0.102 4.102 24 C -0.230 4.230 25 C -0.071 4.071 26 C -0.033 4.033 27 C -0.102 4.102 28 C -0.153 4.153 29 C -0.142 4.142 30 C -0.148 4.148 31 C -0.135 4.135 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.208 0.792 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.224 0.776 42 H 0.182 0.818 43 H 0.118 0.882 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.164 0.836 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.185 9.092 16.836 20.811 hybrid contribution 1.168 -0.998 -1.029 1.849 sum -7.017 8.094 15.807 19.095 Atomic orbital electron populations 1.22058 0.93683 1.01714 1.03635 1.21998 0.95258 0.95646 0.83386 0.89341 1.23121 0.95605 1.00369 0.97317 1.21320 0.95009 0.89522 0.88256 0.90559 1.42538 1.04631 1.24243 1.64784 1.19669 0.84769 1.04245 1.28791 0.89838 1.25525 1.01347 0.97927 1.01308 1.69816 1.34055 1.14774 1.42938 0.85154 0.80580 0.77658 0.76810 1.18672 1.22310 1.22561 1.23146 0.86181 0.95462 1.00335 1.48539 1.28309 1.48542 1.09141 1.16883 0.83322 0.80895 0.80499 1.90771 1.25157 1.44580 1.81717 1.20419 0.95090 1.06633 0.96063 1.42870 1.21729 1.36351 1.12893 0.73092 1.22641 1.02534 1.01281 0.83705 1.21159 0.97114 1.03663 1.01085 1.18845 0.96747 1.00504 0.90980 1.18294 0.93790 0.93104 0.98127 1.21084 0.97990 0.93936 0.97203 1.21261 0.94570 1.00744 0.98696 1.21470 0.99502 0.94521 0.98726 1.21332 0.97783 0.95162 1.00492 1.21352 0.94333 1.00083 0.97752 0.91054 0.89897 0.94323 0.88108 0.91646 0.79196 0.94016 0.92464 0.91253 0.77555 0.81757 0.88174 0.85008 0.83770 0.83626 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 8.71 71.98 0.63 -3.58 16 2 C 0.14 3.89 3.76 45.54 0.17 4.06 16 3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.13 -3.67 6.15 32.06 0.20 -3.47 16 5 C 0.17 5.79 3.59 46.18 0.17 5.96 16 6 H 0.08 2.53 8.11 -2.39 -0.02 2.51 16 7 N -0.72 -32.25 5.16 -317.32 -1.64 -33.89 16 8 C -0.24 -12.01 9.97 84.04 0.84 -11.18 16 9 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 10 C -0.07 -3.60 5.50 84.86 0.47 -3.14 16 11 N -0.97 -55.50 13.06 21.65 0.28 -55.22 16 12 Si 0.97 42.76 29.55 68.60 2.03 44.79 16 13 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 14 H -0.30 -13.20 7.11 99.48 0.71 -12.50 16 15 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 16 C 0.08 2.36 4.87 86.73 0.42 2.78 16 17 N -0.61 -18.96 3.24 -792.68 -2.57 -21.53 16 18 C 0.59 19.96 7.57 86.37 0.65 20.61 16 19 O -0.54 -19.80 11.08 -4.46 -0.05 -19.85 16 20 C -0.07 -2.13 6.91 40.56 0.28 -1.85 16 21 N -0.54 -14.15 5.61 -183.14 -1.03 -15.17 16 22 H 0.43 10.98 4.91 -92.71 -0.46 10.53 16 23 C 0.03 0.74 11.86 83.39 0.99 1.72 16 24 C -0.21 -4.79 10.73 22.21 0.24 -4.55 16 25 C -0.06 -1.79 5.67 -19.77 -0.11 -1.91 16 26 C -0.03 -0.94 5.27 -20.06 -0.11 -1.05 16 27 C -0.08 -2.44 7.63 22.50 0.17 -2.27 16 28 C -0.13 -3.26 10.03 22.24 0.22 -3.04 16 29 C -0.12 -2.56 10.04 22.32 0.22 -2.33 16 30 C -0.13 -2.69 10.03 22.23 0.22 -2.46 16 31 C -0.12 -2.87 9.74 22.50 0.22 -2.65 16 32 H 0.07 2.21 5.88 -2.39 -0.01 2.19 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.06 2.09 7.92 -2.39 -0.02 2.08 16 37 H 0.38 18.54 7.73 -92.71 -0.72 17.82 16 38 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 39 H 0.06 1.99 6.97 -2.39 -0.02 1.97 16 40 H 0.07 2.00 7.23 -2.39 -0.02 1.99 16 41 H 0.21 2.72 8.06 -2.91 -0.02 2.69 16 42 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 43 H 0.10 3.17 7.36 -2.91 -0.02 3.15 16 44 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 46 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 47 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -64.90 380.23 2.75 -62.16 By element: Atomic # 1 Polarization: 47.22 SS G_CDS: -0.17 Total: 47.05 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.89 Total: -8.33 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -4.95 Total: -125.81 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -64.90 2.75 -62.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989667712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.087 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds