Wall clock time and date at job start Tue Mar 31 2020 22:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.32916 * 2 1 4 4 C 1.54911 * 110.36871 * 122.23920 * 2 1 3 5 5 C 1.55157 * 101.58089 * 155.84152 * 4 2 1 6 6 H 1.08997 * 110.71450 * 83.04345 * 5 4 2 7 7 N 1.46505 * 110.71872 * 206.13575 * 5 4 2 8 8 C 1.36931 * 119.99788 * 202.56290 * 7 5 4 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 5 11 11 N 1.31617 * 119.99873 * 180.27450 * 10 8 7 12 12 Si 1.86800 * 120.00209 * 0.27770 * 10 8 7 13 13 H 1.48498 * 109.47118 * 89.99559 * 12 10 8 14 14 H 1.48499 * 109.47134 * 210.00079 * 12 10 8 15 15 H 1.48507 * 109.46904 * 329.99901 * 12 10 8 16 16 C 1.54315 * 103.10667 * 324.59003 * 5 4 2 17 17 N 1.47324 * 107.12170 * 21.97350 * 16 5 4 18 18 C 1.34773 * 125.61696 * 181.11259 * 17 16 5 19 19 O 1.21720 * 119.99838 * 180.22098 * 18 17 16 20 20 C 1.46579 * 120.00099 * 0.22475 * 18 17 16 21 21 C 1.38054 * 126.00812 * 179.69217 * 20 18 17 22 22 C 1.39359 * 107.44447 * 179.83962 * 21 20 18 23 23 C 1.37825 * 107.65026 * 0.41577 * 22 21 20 24 24 C 1.47817 * 125.82240 * 179.73762 * 23 22 21 25 25 C 1.39584 * 120.14407 * 179.72740 * 24 23 22 26 26 C 1.37960 * 119.84894 * 179.74395 * 25 24 23 27 27 C 1.38363 * 120.14648 * 0.53728 * 26 25 24 28 28 C 1.38364 * 120.29312 * 359.73436 * 27 26 25 29 29 C 1.37955 * 120.14737 * 359.97438 * 28 27 26 30 30 N 1.36404 * 108.35283 * 359.74399 * 23 22 21 31 31 H 0.97006 * 125.71618 * 180.02562 * 30 23 22 32 32 H 1.09002 * 109.46606 * 297.76325 * 1 2 3 33 33 H 1.09004 * 109.46940 * 57.75374 * 1 2 3 34 34 H 1.08994 * 109.47715 * 177.76008 * 1 2 3 35 35 H 1.09003 * 110.99893 * 37.77109 * 4 2 1 36 36 H 1.08996 * 111.03870 * 273.93620 * 4 2 1 37 37 H 0.97000 * 119.99792 * 22.56084 * 7 5 4 38 38 H 0.97000 * 120.00553 * 180.02562 * 11 10 8 39 39 H 1.08991 * 109.88989 * 141.52005 * 16 5 4 40 40 H 1.09007 * 109.88443 * 262.68941 * 16 5 4 41 41 H 1.08005 * 126.27466 * 359.96482 * 21 20 18 42 42 H 1.07991 * 126.17532 * 180.16018 * 22 21 20 43 43 H 1.07999 * 120.08060 * 0.02562 * 25 24 23 44 44 H 1.08003 * 119.92341 * 180.25051 * 26 25 24 45 45 H 1.07991 * 119.85252 * 179.71918 * 27 26 25 46 46 H 1.07996 * 119.92169 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.06884 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0692 -0.7747 1.2284 5 6 3.4777 -1.1991 0.7352 6 1 4.1951 -0.3906 0.8753 7 7 3.9249 -2.4117 1.4253 8 6 5.2610 -2.7005 1.5054 9 1 5.9852 -2.0343 1.0603 10 6 5.6850 -3.8465 2.1642 11 7 6.9696 -4.1214 2.2459 12 14 4.4325 -4.9984 2.9347 13 1 4.0232 -6.0218 1.9395 14 1 5.0363 -5.6687 4.1143 15 1 3.2422 -4.2205 3.3629 16 6 3.2540 -1.4765 -0.7662 17 7 2.0430 -0.7396 -1.1676 18 6 1.4971 -0.7387 -2.3999 19 8 0.4930 -0.0870 -2.6201 20 6 2.1126 -1.5226 -3.4747 21 6 1.6569 -1.6157 -4.7746 22 6 2.5302 -2.4546 -5.4643 23 6 3.4996 -2.8694 -4.5768 24 6 4.6249 -3.7765 -4.8864 25 6 5.5457 -4.1154 -3.8935 26 6 6.5906 -4.9667 -4.1878 27 6 6.7334 -5.4755 -5.4666 28 6 5.8274 -5.1390 -6.4568 29 6 4.7746 -4.2935 -6.1743 30 7 3.2435 -2.3001 -3.3640 31 1 3.7701 -2.4222 -2.5585 32 1 -0.3632 0.4787 0.9094 33 1 -0.3633 0.5483 -0.8692 34 1 -0.3634 -1.0268 -0.0402 35 1 1.4510 -1.6466 1.4424 36 1 2.1399 -0.1249 2.1006 37 1 3.2745 -3.0098 1.8254 38 1 7.2659 -4.9223 2.7059 39 1 4.1120 -1.1263 -1.3399 40 1 3.1080 -2.5445 -0.9283 41 1 0.7849 -1.1262 -5.1826 42 1 2.4577 -2.7332 -6.5051 43 1 5.4378 -3.7158 -2.8960 44 1 7.3014 -5.2330 -3.4195 45 1 7.5557 -6.1379 -5.6929 46 1 5.9444 -5.5399 -7.4527 47 1 4.0684 -4.0314 -6.9483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989853379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:07 Heat of formation + Delta-G solvation = 42.047601 kcal Electronic energy + Delta-G solvation = -29279.256364 eV Core-core repulsion = 25427.311914 eV Total energy + Delta-G solvation = -3851.944451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.54370 -40.93209 -39.64877 -38.76589 -36.15863 -33.73570 -33.49114 -32.85468 -32.25311 -31.46335 -30.65362 -29.05553 -26.95003 -25.78588 -24.67226 -23.72842 -23.13421 -22.29260 -21.58707 -21.17127 -20.65143 -19.73199 -18.70201 -17.92264 -17.64191 -16.97418 -16.56648 -16.41350 -15.94175 -15.84793 -15.44338 -15.38712 -15.07451 -14.92692 -14.63140 -14.60844 -14.42270 -14.26762 -13.79540 -13.68159 -13.62870 -13.55659 -13.43357 -13.21632 -13.06402 -12.94788 -12.43690 -12.28569 -12.24274 -12.04740 -11.93714 -11.89356 -11.65405 -11.15706 -10.89325 -10.48931 -10.13232 -9.92751 -9.82665 -9.46299 -8.68821 -8.06936 -5.43300 -0.24193 0.43806 0.68551 1.36221 1.37002 1.44576 1.73168 1.77664 2.02196 2.27235 2.43376 2.93648 3.21309 3.22890 3.53364 3.56564 3.64315 3.73829 3.89452 4.01206 4.03132 4.11858 4.24447 4.25845 4.32060 4.33101 4.39140 4.49138 4.51872 4.57404 4.61508 4.73715 4.84425 4.97223 5.00072 5.02897 5.07300 5.09432 5.17726 5.21111 5.39741 5.46778 5.49532 5.57528 5.71616 5.78673 5.87651 6.00849 6.15695 6.22152 6.33294 6.97956 7.01090 7.73657 7.92302 9.13187 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007069 B = 0.004980 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3960.053828 B = 5621.534646 C = 9114.362309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.090 0.910 4 C -0.127 4.127 5 C 0.173 3.827 6 H 0.078 0.922 7 N -0.738 5.738 8 C -0.237 4.237 9 H 0.065 0.935 10 C -0.049 4.049 11 N -0.975 5.975 12 Si 0.942 3.058 13 H -0.284 1.284 14 H -0.298 1.298 15 H -0.249 1.249 16 C 0.074 3.926 17 N -0.612 5.612 18 C 0.599 3.401 19 O -0.556 6.556 20 C -0.069 4.069 21 C -0.109 4.109 22 C -0.183 4.183 23 C 0.076 3.924 24 C -0.041 4.041 25 C -0.138 4.138 26 C -0.127 4.127 27 C -0.118 4.118 28 C -0.112 4.112 29 C -0.098 4.098 30 N -0.536 5.536 31 H 0.419 0.581 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.368 0.632 38 H 0.258 0.742 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.148 0.852 46 H 0.161 0.839 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 1.825 -15.614 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.108 0.892 4 C -0.165 4.165 5 C 0.063 3.937 6 H 0.096 0.904 7 N -0.380 5.380 8 C -0.368 4.368 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.624 5.624 12 Si 0.770 3.230 13 H -0.210 1.210 14 H -0.224 1.224 15 H -0.174 1.174 16 C -0.053 4.053 17 N -0.345 5.345 18 C 0.390 3.610 19 O -0.436 6.436 20 C -0.183 4.183 21 C -0.136 4.136 22 C -0.207 4.207 23 C -0.042 4.042 24 C -0.042 4.042 25 C -0.157 4.157 26 C -0.145 4.145 27 C -0.136 4.136 28 C -0.130 4.130 29 C -0.117 4.117 30 N -0.136 5.136 31 H 0.263 0.737 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.202 0.798 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.177 0.823 42 H 0.195 0.805 43 H 0.118 0.882 44 H 0.143 0.857 45 H 0.166 0.834 46 H 0.179 0.821 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.193 2.218 -15.571 17.734 hybrid contribution 0.266 -1.035 1.412 1.771 sum -7.927 1.183 -14.159 16.270 Atomic orbital electron populations 1.22042 0.93158 1.02098 1.03640 1.22050 0.95670 0.95771 0.83164 0.89221 1.23150 0.94787 1.00975 0.97610 1.21281 0.95578 0.89037 0.87821 0.90444 1.42688 1.03740 1.25515 1.66047 1.19007 0.83380 1.05235 1.29149 0.91676 1.25369 0.97176 1.00099 1.01556 1.69851 1.14900 1.28439 1.49192 0.85607 0.79784 0.79552 0.78026 1.21037 1.22436 1.17365 1.23159 0.86077 0.95618 1.00416 1.48623 1.28005 1.48470 1.09402 1.16882 0.83055 0.80560 0.80467 1.90745 1.25711 1.45104 1.82047 1.20509 0.94292 1.06032 0.97449 1.21415 1.00952 1.00652 0.90572 1.21394 0.95534 1.03125 1.00599 1.19626 0.98609 1.00283 0.85634 1.18240 0.93026 0.97526 0.95404 1.21256 0.96230 0.99818 0.98418 1.21281 0.97711 0.97191 0.98298 1.21608 1.00068 0.99554 0.92355 1.21496 0.93680 0.97095 1.00709 1.21430 0.99000 0.96670 0.94590 1.42949 1.22488 1.36391 1.11818 0.73728 0.89439 0.91416 0.93774 0.90559 0.87318 0.79782 0.93274 0.91997 0.92159 0.82262 0.80487 0.88179 0.85687 0.83388 0.82143 0.82767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.59 71.98 0.62 -3.11 16 2 C 0.14 3.51 3.77 45.47 0.17 3.68 16 3 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.13 -3.29 6.12 31.99 0.20 -3.09 16 5 C 0.17 5.70 3.59 46.18 0.17 5.87 16 6 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 7 N -0.74 -30.52 4.97 -317.33 -1.58 -32.10 16 8 C -0.24 -12.22 10.45 84.04 0.88 -11.34 16 9 H 0.07 3.67 8.06 -2.91 -0.02 3.65 16 10 C -0.05 -2.70 5.50 84.86 0.47 -2.24 16 11 N -0.97 -58.83 13.97 21.65 0.30 -58.53 16 12 Si 0.94 42.77 27.74 68.60 1.90 44.67 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 15 H -0.25 -10.09 6.51 99.48 0.65 -9.45 16 16 C 0.07 2.33 4.87 86.67 0.42 2.75 16 17 N -0.61 -18.47 3.25 -792.15 -2.57 -21.04 16 18 C 0.60 19.68 7.60 86.42 0.66 20.34 16 19 O -0.56 -19.98 14.59 -4.41 -0.06 -20.04 16 20 C -0.07 -2.13 6.88 40.36 0.28 -1.85 16 21 C -0.11 -2.93 10.60 22.50 0.24 -2.69 16 22 C -0.18 -4.26 10.22 22.44 0.23 -4.03 16 23 C 0.08 2.05 6.93 40.87 0.28 2.33 16 24 C -0.04 -1.04 5.87 -20.09 -0.12 -1.16 16 25 C -0.14 -3.92 9.70 22.53 0.22 -3.70 16 26 C -0.13 -3.18 10.03 22.23 0.22 -2.95 16 27 C -0.12 -2.24 10.04 22.33 0.22 -2.01 16 28 C -0.11 -1.82 10.03 22.23 0.22 -1.60 16 29 C -0.10 -1.86 9.56 22.53 0.22 -1.64 16 30 N -0.54 -15.90 5.52 -172.30 -0.95 -16.85 16 31 H 0.42 12.77 3.95 -92.70 -0.37 12.40 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.92 6.09 -2.38 -0.01 1.91 16 34 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 2.02 7.92 -2.39 -0.02 2.00 16 36 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.37 14.87 5.59 -92.71 -0.52 14.35 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.06 1.96 7.25 -2.39 -0.02 1.94 16 40 H 0.06 2.06 6.95 -2.38 -0.02 2.04 16 41 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 42 H 0.18 2.80 7.26 -2.91 -0.02 2.78 16 43 H 0.10 3.14 7.14 -2.91 -0.02 3.11 16 44 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 45 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 46 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 47 H 0.15 2.02 6.98 -2.91 -0.02 2.00 16 Total: -1.00 -67.25 379.53 2.69 -64.56 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: 0.06 Total: 45.78 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 5.59 Total: -6.45 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -4.80 Total: -128.52 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.06 Total: -20.04 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.90 Total: 44.67 kcal Total: -67.25 2.69 -64.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989853379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.609 kcal (2) G-P(sol) polarization free energy of solvation -67.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds