Wall clock time and date at job start Tue Mar 31 2020 22:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.69835 * 2 1 4 4 C 1.53621 * 109.66755 * 120.59575 * 2 1 3 5 5 H 1.09000 * 109.45727 * 294.43733 * 4 2 1 6 6 N 1.46503 * 109.63306 * 54.55796 * 4 2 1 7 7 C 1.34781 * 120.00289 * 204.83457 * 6 4 2 8 8 O 1.21608 * 119.99566 * 0.02562 * 7 6 4 9 9 C 1.47425 * 120.00134 * 180.02562 * 7 6 4 10 10 C 1.38739 * 120.33756 * 0.02562 * 9 7 6 11 11 C 1.38867 * 120.72876 * 179.97438 * 10 9 7 12 12 C 1.36347 * 121.05787 * 0.02562 * 11 10 9 13 13 C 1.40440 * 120.08651 * 359.97438 * 12 11 10 14 14 C 1.40800 * 121.26804 * 180.02562 * 13 12 11 15 15 C 1.36644 * 118.15582 * 179.26308 * 14 13 12 16 16 C 1.39232 * 119.90032 * 0.70547 * 15 14 13 17 17 N 1.31224 * 121.70023 * 359.50722 * 16 15 14 18 18 C 1.33352 * 121.35374 * 359.97438 * 17 16 15 19 19 C 1.53041 * 109.24456 * 174.55113 * 4 2 1 20 20 C 1.53045 * 109.53397 * 298.50911 * 19 4 2 21 21 C 1.53198 * 109.31264 * 61.36886 * 20 19 4 22 22 N 1.46928 * 108.77332 * 305.35925 * 21 20 19 23 23 C 1.36932 * 120.63276 * 233.59079 * 22 21 20 24 24 H 1.08001 * 120.00350 * 150.65283 * 23 22 21 25 25 C 1.38818 * 119.99660 * 330.64568 * 23 22 21 26 26 N 1.31620 * 119.99983 * 336.02138 * 25 23 22 27 27 Si 1.86799 * 119.99867 * 156.02006 * 25 23 22 28 28 H 1.48501 * 109.46978 * 60.00204 * 27 25 23 29 29 H 1.48501 * 109.47272 * 300.00172 * 27 25 23 30 30 H 1.48502 * 109.47224 * 179.97438 * 27 25 23 31 31 H 1.09010 * 109.47063 * 180.34985 * 1 2 3 32 32 H 1.08999 * 109.47325 * 300.34954 * 1 2 3 33 33 H 1.08996 * 109.47353 * 60.35712 * 1 2 3 34 34 H 0.97004 * 120.00309 * 24.83945 * 6 4 2 35 35 H 1.08003 * 119.63542 * 359.95813 * 10 9 7 36 36 H 1.08002 * 119.47300 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.96012 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.92209 * 359.95769 * 14 13 12 39 39 H 1.07994 * 120.04837 * 180.21134 * 15 14 13 40 40 H 1.08003 * 119.15057 * 179.48515 * 16 15 14 41 41 H 1.09000 * 109.46093 * 178.49561 * 19 4 2 42 42 H 1.08997 * 109.46011 * 58.52849 * 19 4 2 43 43 H 1.08990 * 109.50245 * 301.41382 * 20 19 4 44 44 H 1.08999 * 109.51810 * 181.32882 * 20 19 4 45 45 H 1.08993 * 109.58638 * 185.57560 * 21 20 19 46 46 H 1.09000 * 109.58861 * 65.14612 * 21 20 19 47 47 H 0.96999 * 119.99926 * 354.26228 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0470 -0.7363 1.2452 5 1 1.7688 -0.1777 2.1389 6 7 1.4592 -2.0769 1.3038 7 6 1.3428 -2.7106 2.4877 8 8 1.7254 -2.1693 3.5072 9 6 0.7519 -4.0600 2.5465 10 6 0.3137 -4.6842 1.3876 11 6 -0.2438 -5.9553 1.4336 12 6 -0.3761 -6.6230 2.6150 13 6 0.0544 -6.0280 3.8121 14 6 -0.0699 -6.6951 5.0457 15 6 0.3838 -6.0632 6.1691 16 6 0.9362 -4.7887 6.0733 17 7 1.0455 -4.1694 4.9215 18 6 0.6313 -4.7353 3.7873 19 6 3.5712 -0.8497 1.1675 20 6 3.9615 -1.6627 -0.0690 21 6 3.4657 -0.9418 -1.3266 22 7 2.0225 -0.6995 -1.1946 23 6 1.1537 -1.1126 -2.1690 24 1 0.1386 -1.3763 -1.9111 25 6 1.5776 -1.1923 -3.4885 26 7 2.5937 -0.4630 -3.8985 27 14 0.7060 -2.3347 -4.6821 28 1 -0.7228 -1.9440 -4.7873 29 1 0.8020 -3.7323 -4.1893 30 1 1.3455 -2.2355 -6.0187 31 1 -0.3634 -1.0277 0.0063 32 1 -0.3634 0.5192 0.8868 33 1 -0.3634 0.5082 -0.8931 34 1 1.1538 -2.5087 0.4906 35 1 0.4069 -4.1760 0.4392 36 1 -0.5778 -6.4225 0.5189 37 1 -0.8126 -7.6108 2.6303 38 1 -0.5014 -7.6837 5.1011 39 1 0.3068 -6.5482 7.1309 40 1 1.2834 -4.2970 6.9700 41 1 3.9443 -1.3481 2.0623 42 1 4.0066 0.1472 1.0990 43 1 3.5062 -2.6514 -0.0131 44 1 5.0460 -1.7634 -0.1113 45 1 3.6532 -1.5635 -2.2020 46 1 3.9877 0.0091 -1.4324 47 1 2.9931 0.1904 -3.3032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993534459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:13 Heat of formation + Delta-G solvation = 46.361809 kcal Electronic energy + Delta-G solvation = -30089.319772 eV Core-core repulsion = 26237.562399 eV Total energy + Delta-G solvation = -3851.757372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.05101 -39.50229 -37.65817 -36.94286 -34.09980 -33.53326 -32.49731 -31.82302 -30.64591 -30.32805 -28.95965 -26.32623 -24.96031 -24.69503 -23.62292 -23.40814 -21.75042 -20.97400 -20.21428 -18.87299 -18.25752 -17.78265 -17.04397 -16.86278 -16.09071 -15.34093 -14.97406 -14.84755 -14.57519 -14.35410 -14.21084 -13.98924 -13.84129 -13.58906 -13.31077 -13.16452 -13.14643 -12.89908 -12.59051 -12.22640 -11.87632 -11.75765 -11.52253 -11.42241 -11.23349 -10.99806 -10.80437 -10.63690 -10.62009 -10.21358 -10.09839 -10.03349 -9.79354 -9.76595 -9.14400 -9.06933 -8.95807 -8.56074 -8.41405 -8.29218 -6.90291 -6.07587 -3.29050 0.04420 0.67155 1.64585 2.67371 3.43404 3.45004 3.46311 3.56182 3.65198 4.12833 4.17522 4.42779 4.53619 4.56127 4.66616 4.72215 4.90286 4.98550 5.13424 5.16612 5.28677 5.33638 5.50586 5.53330 5.61437 5.67315 5.71883 5.78548 5.86014 5.88924 6.05602 6.06039 6.17063 6.17918 6.25686 6.32675 6.37867 6.43606 6.54438 6.59300 6.63539 6.68186 6.84021 6.94916 7.05259 7.11737 7.23000 7.90551 7.97521 8.09551 8.54708 8.73000 9.07762 9.81338 10.26771 11.18867 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.003637 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.679546 B = 7697.056905 C = 8896.547164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.161 3.839 3 H 0.037 0.963 4 C 0.137 3.863 5 H 0.077 0.923 6 N -0.701 5.701 7 C 0.547 3.453 8 O -0.514 6.514 9 C -0.103 4.103 10 C -0.062 4.062 11 C -0.120 4.120 12 C -0.079 4.079 13 C -0.112 4.112 14 C -0.060 4.060 15 C -0.178 4.178 16 C 0.126 3.874 17 N -0.434 5.434 18 C 0.161 3.839 19 C -0.121 4.121 20 C -0.134 4.134 21 C 0.152 3.848 22 N -0.594 5.594 23 C -0.352 4.352 24 H 0.061 0.939 25 C -0.021 4.021 26 N -0.915 5.915 27 Si 1.061 2.939 28 H -0.293 1.293 29 H -0.293 1.293 30 H -0.286 1.286 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.405 0.595 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.158 0.842 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.016 0.984 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.283 -12.447 15.187 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 H 0.055 0.945 4 C 0.031 3.969 5 H 0.095 0.905 6 N -0.354 5.354 7 C 0.333 3.667 8 O -0.390 6.390 9 C -0.107 4.107 10 C -0.082 4.082 11 C -0.138 4.138 12 C -0.098 4.098 13 C -0.114 4.114 14 C -0.086 4.086 15 C -0.198 4.198 16 C -0.047 4.047 17 N -0.140 5.140 18 C 0.038 3.962 19 C -0.160 4.160 20 C -0.173 4.173 21 C 0.026 3.974 22 N -0.319 5.319 23 C -0.481 4.481 24 H 0.079 0.921 25 C -0.224 4.224 26 N -0.554 5.554 27 Si 0.892 3.108 28 H -0.220 1.220 29 H -0.221 1.221 30 H -0.212 1.212 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.243 0.757 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.175 0.825 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.034 0.966 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.632 -11.746 14.167 18.977 hybrid contribution -0.526 -0.503 1.219 1.419 sum -5.158 -12.249 15.385 20.331 Atomic orbital electron populations 1.21745 0.95419 1.01459 1.00357 1.20806 0.93561 0.93566 0.86687 0.94500 1.21545 0.92712 0.82998 0.99669 0.90519 1.45932 1.62180 1.18377 1.08884 1.17907 0.79770 0.84909 0.84142 1.90803 1.48202 1.66298 1.33659 1.20060 1.02772 0.95855 0.92002 1.21642 0.93873 0.94782 0.97938 1.20899 0.99531 0.94741 0.98602 1.21134 0.97648 0.99603 0.91388 1.18835 1.01997 0.95571 0.94996 1.21438 0.96401 0.99428 0.91374 1.21937 1.01035 0.97151 0.99669 1.23165 0.93692 0.91589 0.96208 1.68337 1.14087 1.34136 0.97463 1.18635 0.95145 0.90339 0.92100 1.21770 0.95721 1.00300 0.98195 1.22010 0.98963 0.99653 0.96694 1.20963 0.84162 0.96748 0.95543 1.44258 1.02554 1.65374 1.19676 1.19927 0.96199 1.43774 0.88192 0.92095 1.25819 1.00061 1.00781 0.95746 1.70765 1.25946 1.20696 1.38005 0.83570 0.75064 0.75825 0.76391 1.22041 1.22075 1.21207 0.92798 0.94225 0.91828 0.75749 0.84185 0.84634 0.84972 0.84412 0.84630 0.82481 0.92781 0.91993 0.92548 0.93313 0.90391 0.96594 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 7.75 37.16 0.29 -2.18 16 2 C 0.16 3.20 3.22 -67.37 -0.22 2.99 16 3 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.14 2.52 2.33 -67.59 -0.16 2.37 16 5 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 6 N -0.70 -12.39 3.42 -54.54 -0.19 -12.58 16 7 C 0.55 10.03 7.73 -12.52 -0.10 9.93 16 8 O -0.51 -10.84 14.85 5.27 0.08 -10.77 16 9 C -0.10 -1.64 5.90 -104.62 -0.62 -2.26 16 10 C -0.06 -0.81 9.52 -39.16 -0.37 -1.18 16 11 C -0.12 -1.26 9.93 -40.03 -0.40 -1.65 16 12 C -0.08 -0.77 9.75 -39.43 -0.38 -1.16 16 13 C -0.11 -1.33 5.74 -106.82 -0.61 -1.95 16 14 C -0.06 -0.55 9.90 -39.19 -0.39 -0.94 16 15 C -0.18 -1.58 10.03 -39.79 -0.40 -1.98 16 16 C 0.13 1.48 11.15 -17.44 -0.19 1.28 16 17 N -0.43 -6.99 8.44 -10.76 -0.09 -7.08 16 18 C 0.16 2.48 6.61 -84.58 -0.56 1.92 16 19 C -0.12 -2.20 5.57 -26.69 -0.15 -2.35 16 20 C -0.13 -2.55 5.93 -26.61 -0.16 -2.71 16 21 C 0.15 3.38 4.69 -3.71 -0.02 3.36 16 22 N -0.59 -13.49 2.48 -164.52 -0.41 -13.90 16 23 C -0.35 -8.79 8.48 -15.06 -0.13 -8.92 16 24 H 0.06 1.50 6.29 -52.49 -0.33 1.17 16 25 C -0.02 -0.56 4.70 -17.43 -0.08 -0.64 16 26 N -0.91 -26.15 12.46 55.49 0.69 -25.46 16 27 Si 1.06 23.73 29.98 -169.99 -5.10 18.64 16 28 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 30 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 31 H 0.05 0.99 6.42 -51.92 -0.33 0.66 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.27 7.62 -51.93 -0.40 0.88 16 34 H 0.41 7.15 5.81 -40.82 -0.24 6.92 16 35 H 0.14 1.79 6.37 -52.48 -0.33 1.46 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.16 1.40 8.06 -52.48 -0.42 0.97 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.10 7.53 -51.93 -0.39 0.71 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.95 6.39 -51.93 -0.33 1.62 16 46 H 0.02 0.37 7.85 -51.93 -0.41 -0.04 16 47 H 0.27 7.82 6.69 -40.82 -0.27 7.55 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -32.19 371.43 -10.51 -42.70 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.45 Total: 8.91 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -4.64 Total: -6.07 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.01 Total: -59.01 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.10 Total: 18.64 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.19 -10.51 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.057 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds