Wall clock time and date at job start Tue Mar 31 2020 22:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.70020 * 2 1 4 4 C 1.53195 * 109.58859 * 239.63933 * 2 1 3 5 5 H 1.08997 * 109.49537 * 305.56284 * 4 2 1 6 6 N 1.46499 * 109.49461 * 65.62353 * 4 2 1 7 7 C 1.34773 * 119.99983 * 204.93472 * 6 4 2 8 8 O 1.21605 * 120.00101 * 0.02562 * 7 6 4 9 9 C 1.47433 * 119.99883 * 180.27901 * 7 6 4 10 10 C 1.38746 * 120.33483 * 359.72443 * 9 7 6 11 11 C 1.38870 * 120.72408 * 180.02562 * 10 9 7 12 12 C 1.36355 * 121.05801 * 359.96020 * 11 10 9 13 13 C 1.40438 * 120.08720 * 0.04199 * 12 11 10 14 14 C 1.40802 * 121.26640 * 179.97438 * 13 12 11 15 15 C 1.36639 * 118.15078 * 180.02562 * 14 13 12 16 16 C 1.39227 * 119.91232 * 0.02562 * 15 14 13 17 17 N 1.31234 * 121.69535 * 359.97438 * 16 15 14 18 18 C 1.33356 * 121.35101 * 359.69964 * 17 16 15 19 19 C 1.53030 * 109.33754 * 185.59380 * 4 2 1 20 20 C 1.53035 * 109.54247 * 61.31947 * 19 4 2 21 21 C 1.53189 * 109.33931 * 298.68113 * 20 19 4 22 22 N 1.46925 * 108.77582 * 54.61684 * 21 20 19 23 23 C 1.36942 * 120.63279 * 126.41428 * 22 21 20 24 24 H 1.07993 * 120.00168 * 209.03173 * 23 22 21 25 25 C 1.38816 * 119.99804 * 29.03544 * 23 22 21 26 26 N 1.31619 * 120.00057 * 15.05288 * 25 23 22 27 27 Si 1.86797 * 120.00005 * 195.05177 * 25 23 22 28 28 H 1.48495 * 109.46838 * 60.00121 * 27 25 23 29 29 H 1.48497 * 109.47100 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46997 * 300.00115 * 27 25 23 31 31 H 1.09006 * 109.46939 * 180.36232 * 1 2 3 32 32 H 1.09002 * 109.47067 * 300.35867 * 1 2 3 33 33 H 1.08999 * 109.46783 * 60.36104 * 1 2 3 34 34 H 0.96999 * 120.00184 * 24.93834 * 6 4 2 35 35 H 1.07996 * 119.63947 * 0.02562 * 10 9 7 36 36 H 1.07995 * 119.46907 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.95492 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.92890 * 359.97438 * 14 13 12 39 39 H 1.07995 * 120.03963 * 179.97438 * 15 14 13 40 40 H 1.07993 * 119.15743 * 180.02562 * 16 15 14 41 41 H 1.09005 * 109.45950 * 181.36717 * 19 4 2 42 42 H 1.09006 * 109.46414 * 301.32512 * 19 4 2 43 43 H 1.08998 * 109.50195 * 178.71346 * 20 19 4 44 44 H 1.09004 * 109.50189 * 58.64655 * 20 19 4 45 45 H 1.08998 * 109.58768 * 294.83318 * 21 20 19 46 46 H 1.09005 * 109.70717 * 174.47792 * 21 20 19 47 47 H 0.97001 * 120.00566 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2454 5 1 1.6026 -1.7252 -1.2915 6 7 1.6706 0.0265 -2.4435 7 6 1.5485 -0.6049 -3.6279 8 8 1.7476 -1.8023 -3.7019 9 6 1.1791 0.1570 -4.8348 10 6 0.9498 1.5232 -4.7581 11 6 0.6009 2.2487 -5.8897 12 6 0.4750 1.6409 -7.1038 13 6 0.6980 0.2598 -7.2263 14 6 0.5743 -0.3932 -8.4676 15 6 0.8052 -1.7392 -8.5138 16 6 1.1513 -2.4245 -7.3523 17 7 1.2652 -1.8111 -6.1978 18 6 1.0595 -0.4982 -6.0864 19 6 3.5674 -0.8487 -1.1704 20 6 3.9569 -1.6657 0.0636 21 6 3.4651 -0.9469 1.3238 22 7 2.0226 -0.6995 1.1946 23 6 1.1537 -1.1126 2.1691 24 1 0.1361 -1.3673 1.9126 25 6 1.5810 -1.2037 3.4867 26 7 2.7037 -0.6246 3.8560 27 14 0.5626 -2.1484 4.7356 28 1 0.4342 -3.5626 4.3014 29 1 1.2307 -2.0956 6.0607 30 1 -0.7870 -1.5373 4.8376 31 1 -0.3633 -1.0277 0.0065 32 1 -0.3633 0.5194 0.8868 33 1 -0.3633 0.5082 -0.8932 34 1 1.5114 0.9815 -2.3844 35 1 1.0438 2.0281 -3.8081 36 1 0.4267 3.3112 -5.8068 37 1 0.2032 2.2224 -7.9724 38 1 0.3037 0.1543 -9.3583 39 1 0.7185 -2.2707 -9.4498 40 1 1.3314 -3.4881 -7.4029 41 1 3.9373 -1.3460 -2.0671 42 1 4.0066 0.1465 -1.1000 43 1 5.0412 -1.7695 0.1039 44 1 3.4988 -2.6531 0.0058 45 1 3.9903 0.0021 1.4317 46 1 3.6521 -1.5695 2.1988 47 1 3.0022 -0.6879 4.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993534468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:17 Heat of formation + Delta-G solvation = 49.020915 kcal Electronic energy + Delta-G solvation = -29278.308904 eV Core-core repulsion = 25426.666839 eV Total energy + Delta-G solvation = -3851.642065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.15331 -39.42843 -37.60718 -37.03852 -34.21731 -33.63475 -32.52993 -31.69737 -30.77667 -30.48905 -28.90493 -26.21362 -25.04689 -24.76393 -23.72893 -23.49934 -21.77479 -20.64407 -20.14992 -19.36249 -18.46903 -17.78901 -17.04188 -16.36611 -16.09633 -15.56070 -15.02559 -14.97742 -14.80842 -14.27084 -14.15168 -14.07833 -13.71108 -13.66380 -13.33914 -13.24120 -13.09467 -12.71995 -12.48220 -12.36059 -11.98348 -11.65935 -11.62686 -11.48523 -11.07089 -10.87773 -10.73153 -10.72384 -10.52005 -10.23311 -10.08547 -10.00411 -9.92968 -9.66909 -9.37537 -9.11756 -9.07482 -8.63712 -8.47535 -8.37712 -6.64138 -5.76351 -3.20563 -0.07353 0.55764 1.54513 2.54548 3.33814 3.36947 3.40907 3.46129 3.48861 4.01879 4.07063 4.29762 4.44494 4.50895 4.55722 4.61573 4.75730 4.84662 5.01025 5.18640 5.32901 5.38170 5.45326 5.57635 5.60389 5.64733 5.68154 5.76759 5.86020 5.90570 6.02572 6.03997 6.14693 6.19880 6.26600 6.39716 6.45943 6.51504 6.60060 6.70291 6.79450 6.81111 6.92720 7.02977 7.13293 7.44961 7.71790 7.79624 7.84240 7.90965 8.47086 8.60482 9.23354 9.86091 10.42397 11.32195 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.002585 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.336198 B =10830.423552 C =11078.742210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.134 3.866 5 H 0.086 0.914 6 N -0.719 5.719 7 C 0.548 3.452 8 O -0.500 6.500 9 C -0.100 4.100 10 C -0.066 4.066 11 C -0.123 4.123 12 C -0.077 4.077 13 C -0.111 4.111 14 C -0.061 4.061 15 C -0.175 4.175 16 C 0.129 3.871 17 N -0.434 5.434 18 C 0.160 3.840 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.169 3.831 22 N -0.582 5.582 23 C -0.251 4.251 24 H 0.070 0.930 25 C 0.004 3.996 26 N -0.904 5.904 27 Si 0.902 3.098 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.391 0.609 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.160 0.840 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.018 0.982 46 H 0.089 0.911 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 5.863 -24.890 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.044 0.956 4 C 0.028 3.972 5 H 0.105 0.895 6 N -0.371 5.371 7 C 0.333 3.667 8 O -0.374 6.374 9 C -0.104 4.104 10 C -0.087 4.087 11 C -0.141 4.141 12 C -0.096 4.096 13 C -0.114 4.114 14 C -0.087 4.087 15 C -0.195 4.195 16 C -0.043 4.043 17 N -0.140 5.140 18 C 0.037 3.963 19 C -0.155 4.155 20 C -0.180 4.180 21 C 0.044 3.956 22 N -0.305 5.305 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.195 4.195 26 N -0.548 5.548 27 Si 0.732 3.268 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.226 0.774 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.177 0.823 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.108 0.892 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.881 4.579 -23.876 24.481 hybrid contribution -0.721 0.560 -0.159 0.927 sum -3.602 5.139 -24.035 24.841 Atomic orbital electron populations 1.21821 0.95709 1.01765 1.00123 1.20561 0.93193 0.93523 0.86693 0.95567 1.21761 0.95028 0.96876 0.83518 0.89550 1.46089 1.70724 1.11925 1.08327 1.17884 0.78678 0.87460 0.82651 1.90850 1.47855 1.13743 1.84933 1.20096 1.03596 0.93575 0.93146 1.21507 0.95151 0.92625 0.99407 1.20851 1.00341 1.00645 0.92289 1.21137 0.97342 0.92808 0.98298 1.18842 1.02995 0.95080 0.94438 1.21445 0.95978 0.94826 0.96458 1.21967 1.01778 0.95339 1.00448 1.23208 0.92844 1.00831 0.87446 1.68364 1.11456 1.08329 1.25870 1.18658 0.96121 0.89777 0.91746 1.21759 0.95461 0.99966 0.98344 1.22178 0.99169 0.99754 0.96866 1.20853 0.83029 0.97201 0.94551 1.44032 1.03174 1.65108 1.18216 1.19139 0.94819 1.37925 0.86165 0.91237 1.25065 0.97830 0.99675 0.96923 1.70008 1.23352 1.44490 1.16938 0.86374 0.79576 0.80263 0.80578 1.20982 1.21677 1.20921 0.92629 0.91807 0.94338 0.77429 0.84596 0.84769 0.84956 0.84347 0.84505 0.82312 0.93142 0.92875 0.93075 0.92515 0.96376 0.89243 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.84 37.16 0.29 -2.29 16 2 C 0.17 3.43 3.03 -67.59 -0.21 3.23 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.13 2.52 1.99 -67.81 -0.14 2.38 16 5 H 0.09 1.89 7.58 -51.93 -0.39 1.49 16 6 N -0.72 -11.17 4.52 -54.77 -0.25 -11.42 16 7 C 0.55 9.30 7.73 -12.52 -0.10 9.21 16 8 O -0.50 -10.45 14.85 5.27 0.08 -10.38 16 9 C -0.10 -1.40 5.91 -104.61 -0.62 -2.01 16 10 C -0.07 -0.66 9.52 -39.16 -0.37 -1.03 16 11 C -0.12 -0.96 9.93 -40.03 -0.40 -1.36 16 12 C -0.08 -0.61 9.75 -39.43 -0.38 -0.99 16 13 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 14 C -0.06 -0.49 9.90 -39.19 -0.39 -0.88 16 15 C -0.18 -1.41 10.03 -39.79 -0.40 -1.81 16 16 C 0.13 1.43 11.15 -17.44 -0.19 1.23 16 17 N -0.43 -6.65 8.44 -10.76 -0.09 -6.74 16 18 C 0.16 2.26 6.61 -84.58 -0.56 1.70 16 19 C -0.12 -2.19 5.46 -26.70 -0.15 -2.34 16 20 C -0.14 -2.85 6.08 -26.62 -0.16 -3.01 16 21 C 0.17 4.06 5.29 -3.71 -0.02 4.04 16 22 N -0.58 -14.36 2.99 -164.77 -0.49 -14.85 16 23 C -0.25 -6.74 8.61 -15.06 -0.13 -6.87 16 24 H 0.07 1.83 6.20 -52.49 -0.33 1.51 16 25 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 26 N -0.90 -25.97 11.14 55.49 0.62 -25.35 16 27 Si 0.90 21.73 29.58 -169.99 -5.03 16.71 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 31 H 0.05 1.11 7.40 -51.93 -0.38 0.73 16 32 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 33 H 0.04 0.60 7.78 -51.93 -0.40 0.19 16 34 H 0.39 4.89 6.63 -40.82 -0.27 4.62 16 35 H 0.14 1.06 6.37 -52.49 -0.33 0.72 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -34.35 375.48 -10.73 -45.08 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.61 Total: 3.88 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -4.62 Total: -2.58 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.21 Total: -58.36 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.35 -10.73 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.098 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds