Wall clock time and date at job start Tue Mar 31 2020 22:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.70020 * 2 1 4 4 C 1.53195 * 109.58859 * 239.63933 * 2 1 3 5 5 H 1.08997 * 109.49537 * 305.56284 * 4 2 1 6 6 N 1.46499 * 109.49461 * 65.62353 * 4 2 1 7 7 C 1.34773 * 119.99983 * 204.93472 * 6 4 2 8 8 O 1.21605 * 120.00101 * 0.02562 * 7 6 4 9 9 C 1.47433 * 119.99883 * 180.27901 * 7 6 4 10 10 C 1.38746 * 120.33483 * 359.72443 * 9 7 6 11 11 C 1.38870 * 120.72408 * 180.02562 * 10 9 7 12 12 C 1.36355 * 121.05801 * 359.96020 * 11 10 9 13 13 C 1.40438 * 120.08720 * 0.04199 * 12 11 10 14 14 C 1.40802 * 121.26640 * 179.97438 * 13 12 11 15 15 C 1.36639 * 118.15078 * 180.02562 * 14 13 12 16 16 C 1.39227 * 119.91232 * 0.02562 * 15 14 13 17 17 N 1.31234 * 121.69535 * 359.97438 * 16 15 14 18 18 C 1.33356 * 121.35101 * 359.69964 * 17 16 15 19 19 C 1.53030 * 109.33754 * 185.59380 * 4 2 1 20 20 C 1.53035 * 109.54247 * 61.31947 * 19 4 2 21 21 C 1.53189 * 109.33931 * 298.68113 * 20 19 4 22 22 N 1.46925 * 108.77582 * 54.61684 * 21 20 19 23 23 C 1.36942 * 120.63279 * 126.41428 * 22 21 20 24 24 H 1.07993 * 120.00168 * 209.03173 * 23 22 21 25 25 C 1.38816 * 119.99804 * 29.03544 * 23 22 21 26 26 N 1.31619 * 120.00057 * 15.05288 * 25 23 22 27 27 Si 1.86797 * 120.00005 * 195.05177 * 25 23 22 28 28 H 1.48495 * 109.46838 * 60.00121 * 27 25 23 29 29 H 1.48497 * 109.47100 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46997 * 300.00115 * 27 25 23 31 31 H 1.09006 * 109.46939 * 180.36232 * 1 2 3 32 32 H 1.09002 * 109.47067 * 300.35867 * 1 2 3 33 33 H 1.08999 * 109.46783 * 60.36104 * 1 2 3 34 34 H 0.96999 * 120.00184 * 24.93834 * 6 4 2 35 35 H 1.07996 * 119.63947 * 0.02562 * 10 9 7 36 36 H 1.07995 * 119.46907 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.95492 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.92890 * 359.97438 * 14 13 12 39 39 H 1.07995 * 120.03963 * 179.97438 * 15 14 13 40 40 H 1.07993 * 119.15743 * 180.02562 * 16 15 14 41 41 H 1.09005 * 109.45950 * 181.36717 * 19 4 2 42 42 H 1.09006 * 109.46414 * 301.32512 * 19 4 2 43 43 H 1.08998 * 109.50195 * 178.71346 * 20 19 4 44 44 H 1.09004 * 109.50189 * 58.64655 * 20 19 4 45 45 H 1.08998 * 109.58768 * 294.83318 * 21 20 19 46 46 H 1.09005 * 109.70717 * 174.47792 * 21 20 19 47 47 H 0.97001 * 120.00566 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2454 5 1 1.6026 -1.7252 -1.2915 6 7 1.6706 0.0265 -2.4435 7 6 1.5485 -0.6049 -3.6279 8 8 1.7476 -1.8023 -3.7019 9 6 1.1791 0.1570 -4.8348 10 6 0.9498 1.5232 -4.7581 11 6 0.6009 2.2487 -5.8897 12 6 0.4750 1.6409 -7.1038 13 6 0.6980 0.2598 -7.2263 14 6 0.5743 -0.3932 -8.4676 15 6 0.8052 -1.7392 -8.5138 16 6 1.1513 -2.4245 -7.3523 17 7 1.2652 -1.8111 -6.1978 18 6 1.0595 -0.4982 -6.0864 19 6 3.5674 -0.8487 -1.1704 20 6 3.9569 -1.6657 0.0636 21 6 3.4651 -0.9469 1.3238 22 7 2.0226 -0.6995 1.1946 23 6 1.1537 -1.1126 2.1691 24 1 0.1361 -1.3673 1.9126 25 6 1.5810 -1.2037 3.4867 26 7 2.7037 -0.6246 3.8560 27 14 0.5626 -2.1484 4.7356 28 1 0.4342 -3.5626 4.3014 29 1 1.2307 -2.0956 6.0607 30 1 -0.7870 -1.5373 4.8376 31 1 -0.3633 -1.0277 0.0065 32 1 -0.3633 0.5194 0.8868 33 1 -0.3633 0.5082 -0.8932 34 1 1.5114 0.9815 -2.3844 35 1 1.0438 2.0281 -3.8081 36 1 0.4267 3.3112 -5.8068 37 1 0.2032 2.2224 -7.9724 38 1 0.3037 0.1543 -9.3583 39 1 0.7185 -2.2707 -9.4498 40 1 1.3314 -3.4881 -7.4029 41 1 3.9373 -1.3460 -2.0671 42 1 4.0066 0.1465 -1.1000 43 1 5.0412 -1.7695 0.1039 44 1 3.4988 -2.6531 0.0058 45 1 3.9903 0.0021 1.4317 46 1 3.6521 -1.5695 2.1988 47 1 3.0022 -0.6879 4.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993534468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:15 Heat of formation + Delta-G solvation = 27.333011 kcal Electronic energy + Delta-G solvation = -29279.249362 eV Core-core repulsion = 25426.666839 eV Total energy + Delta-G solvation = -3852.582523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.96609 -40.74831 -39.12261 -37.87316 -35.85910 -34.48963 -34.17574 -33.42491 -31.69899 -31.42393 -30.38443 -27.88584 -26.89315 -25.63861 -24.68741 -24.37037 -23.26706 -22.34143 -21.40613 -20.97902 -19.22094 -18.80318 -18.24247 -17.82305 -17.20282 -16.99238 -16.55429 -16.10685 -15.67020 -15.63131 -15.57016 -15.29225 -15.04207 -14.93518 -14.76031 -14.44350 -14.31152 -14.02225 -13.83631 -13.36463 -13.23384 -13.02872 -12.80675 -12.73250 -12.68749 -12.54029 -12.38342 -12.27573 -12.02091 -11.83355 -11.79027 -11.61969 -11.45747 -11.20797 -10.97970 -10.52169 -10.09614 -9.99467 -9.78186 -9.25171 -8.65567 -7.85363 -5.31382 -0.80216 -0.14417 0.78950 1.46300 1.49433 1.55265 1.82026 2.12192 2.27941 2.53938 3.19503 3.29829 3.36673 3.53372 3.66679 3.78731 3.86078 3.91417 3.99513 4.05262 4.07446 4.18888 4.22317 4.35042 4.44982 4.50774 4.54447 4.60873 4.68837 4.78424 4.87301 4.91307 4.94315 5.00959 5.02306 5.11484 5.12372 5.22466 5.23859 5.28430 5.38888 5.43561 5.49411 5.57979 5.61974 5.69891 5.76585 5.86845 6.41851 6.64010 7.10544 7.16295 7.37060 7.86411 8.38136 9.21487 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.002585 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.336198 B =10830.423552 C =11078.742210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.167 3.833 3 H 0.038 0.962 4 C 0.150 3.850 5 H 0.051 0.949 6 N -0.707 5.707 7 C 0.548 3.452 8 O -0.553 6.553 9 C -0.150 4.150 10 C -0.047 4.047 11 C -0.129 4.129 12 C -0.056 4.056 13 C -0.131 4.131 14 C -0.050 4.050 15 C -0.177 4.177 16 C 0.116 3.884 17 N -0.501 5.501 18 C 0.130 3.870 19 C -0.108 4.108 20 C -0.129 4.129 21 C 0.177 3.823 22 N -0.600 5.600 23 C -0.255 4.255 24 H 0.071 0.929 25 C -0.048 4.048 26 N -0.933 5.933 27 Si 0.961 3.039 28 H -0.284 1.284 29 H -0.293 1.293 30 H -0.274 1.274 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.408 0.592 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.006 0.994 46 H 0.057 0.943 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 8.583 -28.360 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.060 3.940 3 H 0.055 0.945 4 C 0.044 3.956 5 H 0.069 0.931 6 N -0.360 5.360 7 C 0.336 3.664 8 O -0.430 6.430 9 C -0.154 4.154 10 C -0.067 4.067 11 C -0.147 4.147 12 C -0.074 4.074 13 C -0.133 4.133 14 C -0.075 4.075 15 C -0.196 4.196 16 C -0.056 4.056 17 N -0.209 5.209 18 C 0.007 3.993 19 C -0.147 4.147 20 C -0.169 4.169 21 C 0.051 3.949 22 N -0.324 5.324 23 C -0.385 4.385 24 H 0.088 0.912 25 C -0.243 4.243 26 N -0.579 5.579 27 Si 0.790 3.210 28 H -0.210 1.210 29 H -0.219 1.219 30 H -0.199 1.199 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.246 0.754 35 H 0.173 0.827 36 H 0.192 0.808 37 H 0.194 0.806 38 H 0.201 0.799 39 H 0.191 0.809 40 H 0.185 0.815 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.025 0.975 46 H 0.075 0.925 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.274 7.338 -27.379 28.666 hybrid contribution -0.324 -0.241 0.741 0.844 sum -4.599 7.097 -26.638 27.948 Atomic orbital electron populations 1.21730 0.94510 1.00930 1.01322 1.20705 0.94219 0.93558 0.85513 0.94466 1.21258 0.94712 0.95382 0.84271 0.93064 1.45820 1.70587 1.12488 1.07089 1.18468 0.77291 0.87125 0.83566 1.90808 1.50326 1.16149 1.85753 1.19915 1.08516 0.95081 0.91858 1.21842 0.92492 0.91012 1.01347 1.21294 0.99689 1.02344 0.91346 1.21690 0.94153 0.91698 0.99864 1.19194 1.03397 0.96389 0.94293 1.21993 0.93772 0.94876 0.96872 1.22285 1.00918 0.95850 1.00548 1.23608 0.92414 1.01651 0.87896 1.68267 1.14401 1.09931 1.28280 1.18990 0.97255 0.89948 0.93106 1.21668 0.95510 1.00324 0.97167 1.22024 1.00270 0.98655 0.95954 1.20642 0.83160 0.96225 0.94874 1.44266 1.03174 1.65910 1.19074 1.19411 0.95131 1.37194 0.86792 0.91170 1.25748 0.99053 1.00878 0.98627 1.70148 1.24868 1.45998 1.16877 0.85433 0.78512 0.78866 0.78199 1.21049 1.21946 1.19946 0.94433 0.92899 0.90756 0.75398 0.82712 0.80845 0.80627 0.79924 0.80855 0.81500 0.93376 0.91356 0.90946 0.94074 0.97541 0.92474 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 7.84 71.98 0.56 -4.23 16 2 C 0.17 6.84 3.03 44.98 0.14 6.98 16 3 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 4 C 0.15 5.79 1.99 45.07 0.09 5.88 16 5 H 0.05 2.36 7.58 -2.39 -0.02 2.34 16 6 N -0.71 -21.96 4.52 -445.44 -2.02 -23.97 16 7 C 0.55 19.25 7.73 86.67 0.67 19.92 16 8 O -0.55 -24.76 14.85 -4.05 -0.06 -24.82 16 9 C -0.15 -4.17 5.91 -19.86 -0.12 -4.28 16 10 C -0.05 -0.82 9.52 22.54 0.21 -0.60 16 11 C -0.13 -1.43 9.93 21.98 0.22 -1.21 16 12 C -0.06 -0.61 9.75 22.37 0.22 -0.39 16 13 C -0.13 -2.39 5.74 -21.29 -0.12 -2.52 16 14 C -0.05 -0.61 9.90 22.52 0.22 -0.39 16 15 C -0.18 -2.43 10.03 22.13 0.22 -2.21 16 16 C 0.12 2.61 11.15 85.02 0.95 3.56 16 17 N -0.50 -16.18 8.44 -187.97 -1.59 -17.77 16 18 C 0.13 3.68 6.61 40.61 0.27 3.94 16 19 C -0.11 -4.11 5.46 30.62 0.17 -3.94 16 20 C -0.13 -5.41 6.08 30.67 0.19 -5.23 16 21 C 0.18 8.77 5.29 86.36 0.46 9.22 16 22 N -0.60 -30.38 2.99 -675.21 -2.02 -32.40 16 23 C -0.26 -14.03 8.61 84.03 0.72 -13.31 16 24 H 0.07 3.78 6.20 -2.91 -0.02 3.76 16 25 C -0.05 -2.68 4.96 84.86 0.42 -2.26 16 26 N -0.93 -55.17 11.14 21.65 0.24 -54.93 16 27 Si 0.96 45.63 29.58 68.60 2.03 47.66 16 28 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 29 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 30 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 31 H 0.04 1.52 7.40 -2.38 -0.02 1.51 16 32 H 0.05 2.09 7.66 -2.39 -0.02 2.07 16 33 H 0.07 2.22 7.78 -2.39 -0.02 2.20 16 34 H 0.41 9.60 6.63 -92.71 -0.61 8.99 16 35 H 0.16 1.92 6.37 -2.91 -0.02 1.90 16 36 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 38 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 39 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 43 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.06 3.20 6.06 -2.38 -0.01 3.19 16 47 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -81.97 375.48 2.46 -79.51 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.38 Total: 17.78 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.49 Total: 8.94 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -5.38 Total: -129.07 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.06 Total: -24.82 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -81.97 2.46 -79.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.847 kcal (2) G-P(sol) polarization free energy of solvation -81.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds