Wall clock time and date at job start Tue Mar 31 2020 22:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.59103 * 2 1 4 4 C 1.53193 * 109.70378 * 239.64504 * 2 1 3 5 5 H 1.08992 * 109.50139 * 65.55453 * 4 2 1 6 6 N 1.46507 * 109.49731 * 305.49232 * 4 2 1 7 7 C 1.34776 * 120.00044 * 154.99847 * 6 4 2 8 8 O 1.21594 * 120.00147 * 0.02562 * 7 6 4 9 9 C 1.47439 * 119.99724 * 180.02562 * 7 6 4 10 10 C 1.38744 * 120.33169 * 0.02562 * 9 7 6 11 11 C 1.38864 * 120.71868 * 180.02562 * 10 9 7 12 12 C 1.36354 * 121.06420 * 359.96853 * 11 10 9 13 13 C 1.40438 * 120.08492 * 0.02850 * 12 11 10 14 14 C 1.40806 * 121.27312 * 179.97438 * 13 12 11 15 15 C 1.36632 * 118.15401 * 179.97438 * 14 13 12 16 16 C 1.39230 * 119.91029 * 0.02562 * 15 14 13 17 17 N 1.31231 * 121.69716 * 0.02562 * 16 15 14 18 18 C 1.33351 * 121.34861 * 359.65900 * 17 16 15 19 19 C 1.53045 * 109.31577 * 185.51211 * 4 2 1 20 20 C 1.53036 * 109.53642 * 61.36005 * 19 4 2 21 21 C 1.53625 * 109.24620 * 298.51234 * 20 19 4 22 22 N 1.46926 * 108.53944 * 54.85997 * 21 20 19 23 23 C 1.36938 * 120.63142 * 126.37188 * 22 21 20 24 24 H 1.08002 * 119.99923 * 209.40213 * 23 22 21 25 25 C 1.38816 * 119.99738 * 29.39726 * 23 22 21 26 26 N 1.31616 * 120.00067 * 15.71889 * 25 23 22 27 27 Si 1.86800 * 119.99693 * 195.71918 * 25 23 22 28 28 H 1.48501 * 109.46756 * 265.65557 * 27 25 23 29 29 H 1.48498 * 109.47047 * 25.65282 * 27 25 23 30 30 H 1.48495 * 109.46987 * 145.65653 * 27 25 23 31 31 H 1.09000 * 109.47145 * 299.71543 * 1 2 3 32 32 H 1.08995 * 109.47059 * 59.71602 * 1 2 3 33 33 H 1.09001 * 109.47454 * 179.71808 * 1 2 3 34 34 H 0.97002 * 119.99808 * 334.99852 * 6 4 2 35 35 H 1.07997 * 119.64081 * 359.96900 * 10 9 7 36 36 H 1.08003 * 119.47070 * 180.02562 * 11 10 9 37 37 H 1.07997 * 119.96142 * 180.02562 * 12 11 10 38 38 H 1.08002 * 120.91789 * 359.97438 * 14 13 12 39 39 H 1.07996 * 120.03994 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.14901 * 180.02562 * 16 15 14 41 41 H 1.09003 * 109.46080 * 181.38536 * 19 4 2 42 42 H 1.09002 * 109.45447 * 301.35355 * 19 4 2 43 43 H 1.09000 * 109.49717 * 58.59601 * 20 19 4 44 44 H 1.09005 * 109.49736 * 178.65192 * 20 19 4 45 45 H 1.08996 * 109.73656 * 295.12143 * 21 20 19 46 46 H 1.08998 * 109.66612 * 174.55272 * 21 20 19 47 47 H 0.97003 * 120.00055 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2445 5 1 1.7689 -0.1673 -2.1365 6 7 1.4565 -2.0684 -1.3068 7 6 1.3361 -2.6973 -2.4928 8 8 1.7177 -2.1531 -3.5110 9 6 0.7418 -4.0451 -2.5554 10 6 0.3037 -4.6722 -1.3979 11 6 -0.2567 -5.9418 -1.4476 12 6 -0.3924 -6.6052 -2.6311 13 6 0.0379 -6.0071 -3.8267 14 6 -0.0897 -6.6697 -5.0626 15 6 0.3495 -6.0283 -6.1863 16 6 0.9048 -4.7554 -6.0869 17 7 1.0223 -4.1426 -4.9324 18 6 0.6075 -4.7112 -3.7997 19 6 3.5706 -0.8445 -1.1674 20 6 3.9601 -1.6608 0.0670 21 6 3.4660 -0.9376 1.3291 22 7 2.0225 -0.6981 1.1953 23 6 1.1534 -1.1125 2.1690 24 1 0.1394 -1.3792 1.9098 25 6 1.5757 -1.1900 3.4891 26 7 2.6842 -0.5863 3.8619 27 14 0.5706 -2.1510 4.7363 28 1 -0.3542 -1.2287 5.4431 29 1 -0.2147 -3.1995 4.0369 30 1 1.4816 -2.7887 5.7205 31 1 -0.3633 0.5094 0.8925 32 1 -0.3633 0.5182 -0.8874 33 1 -0.3634 -1.0276 -0.0051 34 1 1.1524 -2.5027 -0.4945 35 1 0.4005 -4.1679 -0.4479 36 1 -0.5914 -6.4109 -0.5342 37 1 -0.8312 -7.5918 -2.6491 38 1 -0.5227 -7.6574 -5.1206 39 1 0.2661 -6.5082 -7.1501 40 1 1.2476 -4.2596 -6.9830 41 1 3.9430 -1.3409 -2.0635 42 1 4.0071 0.1518 -1.0963 43 1 3.5036 -2.6489 0.0086 44 1 5.0446 -1.7631 0.1082 45 1 3.9861 0.0144 1.4352 46 1 3.6538 -1.5585 2.2050 47 1 2.9795 -0.6407 4.7843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993534470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:20 Heat of formation + Delta-G solvation = 49.250978 kcal Electronic energy + Delta-G solvation = -30040.978793 eV Core-core repulsion = 26189.346704 eV Total energy + Delta-G solvation = -3851.632089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.02576 -39.43147 -37.53617 -36.90018 -33.87306 -33.50889 -32.38077 -31.73281 -30.63199 -30.35871 -29.05411 -26.25161 -25.02784 -24.68996 -23.60421 -23.38792 -21.83252 -20.77132 -20.16775 -18.82596 -18.21846 -17.73877 -16.90672 -16.37914 -16.05754 -15.31507 -14.95367 -14.90125 -14.70814 -14.21258 -14.15540 -13.98602 -13.86366 -13.37472 -13.22524 -13.13138 -12.97012 -12.80459 -12.52531 -12.19649 -11.84778 -11.81160 -11.48002 -11.24621 -11.18175 -10.98930 -10.69179 -10.61782 -10.58241 -10.50046 -10.11431 -9.99647 -9.77001 -9.62155 -9.27676 -9.03142 -8.93765 -8.54156 -8.46694 -8.25562 -6.67555 -5.82741 -3.27796 0.06721 0.69196 1.66936 2.69593 3.32223 3.39345 3.40847 3.47301 3.61216 4.15641 4.19754 4.43043 4.45315 4.58177 4.68657 4.74077 4.92750 5.00980 5.16413 5.30748 5.33683 5.34482 5.53303 5.63273 5.68263 5.74195 5.78783 5.82251 5.90014 6.00993 6.07909 6.15464 6.20721 6.26126 6.31953 6.40272 6.46812 6.57811 6.65695 6.71166 6.72945 6.81596 6.96935 6.99976 7.19267 7.39094 7.66365 7.76243 7.93073 8.14577 8.40905 8.78007 9.16856 9.80175 10.38165 11.25103 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.003604 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.560018 B = 7767.773828 C = 8948.375325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.137 3.863 5 H 0.076 0.924 6 N -0.700 5.700 7 C 0.547 3.453 8 O -0.514 6.514 9 C -0.102 4.102 10 C -0.062 4.062 11 C -0.120 4.120 12 C -0.080 4.080 13 C -0.112 4.112 14 C -0.061 4.061 15 C -0.178 4.178 16 C 0.126 3.874 17 N -0.433 5.433 18 C 0.161 3.839 19 C -0.121 4.121 20 C -0.140 4.140 21 C 0.172 3.828 22 N -0.586 5.586 23 C -0.256 4.256 24 H 0.070 0.930 25 C 0.006 3.994 26 N -0.899 5.899 27 Si 0.898 3.102 28 H -0.288 1.288 29 H -0.279 1.279 30 H -0.291 1.291 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.404 0.596 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.158 0.842 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.018 0.982 46 H 0.085 0.915 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.234 -12.120 -14.755 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.057 0.943 4 C 0.031 3.969 5 H 0.094 0.906 6 N -0.353 5.353 7 C 0.332 3.668 8 O -0.390 6.390 9 C -0.106 4.106 10 C -0.083 4.083 11 C -0.138 4.138 12 C -0.099 4.099 13 C -0.114 4.114 14 C -0.087 4.087 15 C -0.198 4.198 16 C -0.047 4.047 17 N -0.139 5.139 18 C 0.038 3.962 19 C -0.160 4.160 20 C -0.179 4.179 21 C 0.047 3.953 22 N -0.310 5.310 23 C -0.386 4.386 24 H 0.088 0.912 25 C -0.193 4.193 26 N -0.543 5.543 27 Si 0.728 3.272 28 H -0.215 1.215 29 H -0.204 1.204 30 H -0.217 1.217 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.242 0.758 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.175 0.825 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.036 0.964 46 H 0.104 0.896 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.512 -10.815 -15.135 19.142 hybrid contribution -0.907 -1.591 1.137 2.156 sum -5.419 -12.407 -13.999 19.474 Atomic orbital electron populations 1.21777 0.95681 1.01353 1.00469 1.20729 0.93308 0.93928 0.86861 0.94328 1.21500 0.92835 0.82869 0.99692 0.90575 1.45951 1.62067 1.18591 1.08717 1.17895 0.79822 0.84868 0.84192 1.90799 1.48298 1.66047 1.33828 1.20087 1.02581 0.96002 0.91912 1.21640 0.93909 0.94742 0.98008 1.20895 0.99534 0.94805 0.98539 1.21126 0.97714 0.99607 0.91409 1.18835 1.02096 0.95479 0.94980 1.21432 0.96451 0.99435 0.91363 1.21931 1.01126 0.97093 0.99643 1.23166 0.93664 0.91669 0.96185 1.68345 1.14031 1.34106 0.97462 1.18642 0.95168 0.90315 0.92120 1.21768 0.95579 1.00369 0.98236 1.22207 0.98842 0.99538 0.97318 1.20881 0.83099 0.97100 0.94258 1.44190 1.03026 1.65036 1.18769 1.19143 0.95169 1.38083 0.86189 0.91248 1.25099 0.97795 0.99434 0.96967 1.70026 1.24112 1.43465 1.16657 0.86359 0.79396 0.79923 0.81503 1.21534 1.20417 1.21679 0.91785 0.94177 0.92901 0.75826 0.84159 0.84704 0.85022 0.84447 0.84656 0.82483 0.93073 0.91985 0.92910 0.93571 0.96377 0.89631 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.74 37.16 0.29 -2.19 16 2 C 0.16 3.16 3.19 -67.60 -0.22 2.95 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.14 2.53 2.33 -67.80 -0.16 2.37 16 5 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 6 N -0.70 -12.33 3.42 -54.76 -0.19 -12.52 16 7 C 0.55 10.00 7.73 -12.51 -0.10 9.91 16 8 O -0.51 -10.85 14.85 5.28 0.08 -10.77 16 9 C -0.10 -1.62 5.91 -104.61 -0.62 -2.24 16 10 C -0.06 -0.82 9.52 -39.16 -0.37 -1.19 16 11 C -0.12 -1.26 9.93 -40.03 -0.40 -1.66 16 12 C -0.08 -0.78 9.75 -39.43 -0.38 -1.17 16 13 C -0.11 -1.34 5.74 -106.82 -0.61 -1.95 16 14 C -0.06 -0.56 9.90 -39.19 -0.39 -0.94 16 15 C -0.18 -1.58 10.03 -39.79 -0.40 -1.98 16 16 C 0.13 1.48 11.15 -17.44 -0.19 1.28 16 17 N -0.43 -6.98 8.44 -10.76 -0.09 -7.07 16 18 C 0.16 2.48 6.61 -84.58 -0.56 1.92 16 19 C -0.12 -2.22 5.58 -26.69 -0.15 -2.37 16 20 C -0.14 -2.70 5.94 -26.39 -0.16 -2.86 16 21 C 0.17 3.92 5.31 -3.49 -0.02 3.91 16 22 N -0.59 -13.40 2.64 -164.51 -0.43 -13.83 16 23 C -0.26 -6.33 8.57 -15.06 -0.13 -6.46 16 24 H 0.07 1.65 6.24 -52.49 -0.33 1.33 16 25 C 0.01 0.16 4.94 -17.43 -0.09 0.08 16 26 N -0.90 -24.89 11.21 55.49 0.62 -24.27 16 27 Si 0.90 20.43 29.58 -169.99 -5.03 15.40 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 30 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 31 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.95 6.40 -51.93 -0.33 0.62 16 34 H 0.40 7.05 5.80 -40.82 -0.24 6.82 16 35 H 0.14 1.78 6.37 -52.49 -0.33 1.44 16 36 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 1.03 7.53 -51.93 -0.39 0.64 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 2.18 6.12 -51.93 -0.32 1.86 16 47 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -31.66 372.43 -10.59 -42.25 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.52 Total: 7.79 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -4.65 Total: -2.59 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.09 Total: -57.69 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.66 -10.59 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.501 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds