Wall clock time and date at job start Tue Mar 31 2020 22:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.59103 * 2 1 4 4 C 1.53193 * 109.70378 * 239.64504 * 2 1 3 5 5 H 1.08992 * 109.50139 * 65.55453 * 4 2 1 6 6 N 1.46507 * 109.49731 * 305.49232 * 4 2 1 7 7 C 1.34776 * 120.00044 * 154.99847 * 6 4 2 8 8 O 1.21594 * 120.00147 * 0.02562 * 7 6 4 9 9 C 1.47439 * 119.99724 * 180.02562 * 7 6 4 10 10 C 1.38744 * 120.33169 * 0.02562 * 9 7 6 11 11 C 1.38864 * 120.71868 * 180.02562 * 10 9 7 12 12 C 1.36354 * 121.06420 * 359.96853 * 11 10 9 13 13 C 1.40438 * 120.08492 * 0.02850 * 12 11 10 14 14 C 1.40806 * 121.27312 * 179.97438 * 13 12 11 15 15 C 1.36632 * 118.15401 * 179.97438 * 14 13 12 16 16 C 1.39230 * 119.91029 * 0.02562 * 15 14 13 17 17 N 1.31231 * 121.69716 * 0.02562 * 16 15 14 18 18 C 1.33351 * 121.34861 * 359.65900 * 17 16 15 19 19 C 1.53045 * 109.31577 * 185.51211 * 4 2 1 20 20 C 1.53036 * 109.53642 * 61.36005 * 19 4 2 21 21 C 1.53625 * 109.24620 * 298.51234 * 20 19 4 22 22 N 1.46926 * 108.53944 * 54.85997 * 21 20 19 23 23 C 1.36938 * 120.63142 * 126.37188 * 22 21 20 24 24 H 1.08002 * 119.99923 * 209.40213 * 23 22 21 25 25 C 1.38816 * 119.99738 * 29.39726 * 23 22 21 26 26 N 1.31616 * 120.00067 * 15.71889 * 25 23 22 27 27 Si 1.86800 * 119.99693 * 195.71918 * 25 23 22 28 28 H 1.48501 * 109.46756 * 265.65557 * 27 25 23 29 29 H 1.48498 * 109.47047 * 25.65282 * 27 25 23 30 30 H 1.48495 * 109.46987 * 145.65653 * 27 25 23 31 31 H 1.09000 * 109.47145 * 299.71543 * 1 2 3 32 32 H 1.08995 * 109.47059 * 59.71602 * 1 2 3 33 33 H 1.09001 * 109.47454 * 179.71808 * 1 2 3 34 34 H 0.97002 * 119.99808 * 334.99852 * 6 4 2 35 35 H 1.07997 * 119.64081 * 359.96900 * 10 9 7 36 36 H 1.08003 * 119.47070 * 180.02562 * 11 10 9 37 37 H 1.07997 * 119.96142 * 180.02562 * 12 11 10 38 38 H 1.08002 * 120.91789 * 359.97438 * 14 13 12 39 39 H 1.07996 * 120.03994 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.14901 * 180.02562 * 16 15 14 41 41 H 1.09003 * 109.46080 * 181.38536 * 19 4 2 42 42 H 1.09002 * 109.45447 * 301.35355 * 19 4 2 43 43 H 1.09000 * 109.49717 * 58.59601 * 20 19 4 44 44 H 1.09005 * 109.49736 * 178.65192 * 20 19 4 45 45 H 1.08996 * 109.73656 * 295.12143 * 21 20 19 46 46 H 1.08998 * 109.66612 * 174.55272 * 21 20 19 47 47 H 0.97003 * 120.00055 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2445 5 1 1.7689 -0.1673 -2.1365 6 7 1.4565 -2.0684 -1.3068 7 6 1.3361 -2.6973 -2.4928 8 8 1.7177 -2.1531 -3.5110 9 6 0.7418 -4.0451 -2.5554 10 6 0.3037 -4.6722 -1.3979 11 6 -0.2567 -5.9418 -1.4476 12 6 -0.3924 -6.6052 -2.6311 13 6 0.0379 -6.0071 -3.8267 14 6 -0.0897 -6.6697 -5.0626 15 6 0.3495 -6.0283 -6.1863 16 6 0.9048 -4.7554 -6.0869 17 7 1.0223 -4.1426 -4.9324 18 6 0.6075 -4.7112 -3.7997 19 6 3.5706 -0.8445 -1.1674 20 6 3.9601 -1.6608 0.0670 21 6 3.4660 -0.9376 1.3291 22 7 2.0225 -0.6981 1.1953 23 6 1.1534 -1.1125 2.1690 24 1 0.1394 -1.3792 1.9098 25 6 1.5757 -1.1900 3.4891 26 7 2.6842 -0.5863 3.8619 27 14 0.5706 -2.1510 4.7363 28 1 -0.3542 -1.2287 5.4431 29 1 -0.2147 -3.1995 4.0369 30 1 1.4816 -2.7887 5.7205 31 1 -0.3633 0.5094 0.8925 32 1 -0.3633 0.5182 -0.8874 33 1 -0.3634 -1.0276 -0.0051 34 1 1.1524 -2.5027 -0.4945 35 1 0.4005 -4.1679 -0.4479 36 1 -0.5914 -6.4109 -0.5342 37 1 -0.8312 -7.5918 -2.6491 38 1 -0.5227 -7.6574 -5.1206 39 1 0.2661 -6.5082 -7.1501 40 1 1.2476 -4.2596 -6.9830 41 1 3.9430 -1.3409 -2.0635 42 1 4.0071 0.1518 -1.0963 43 1 3.5036 -2.6489 0.0086 44 1 5.0446 -1.7631 0.1082 45 1 3.9861 0.0144 1.4352 46 1 3.6538 -1.5585 2.2050 47 1 2.9795 -0.6407 4.7843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993534470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:19 Heat of formation + Delta-G solvation = 31.428684 kcal Electronic energy + Delta-G solvation = -30041.751626 eV Core-core repulsion = 26189.346704 eV Total energy + Delta-G solvation = -3852.404921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.96527 -40.82164 -39.01453 -37.86823 -35.56524 -34.43483 -33.96733 -33.38985 -31.69586 -31.42881 -30.47273 -27.88157 -26.84556 -25.62957 -24.61119 -24.35980 -23.44129 -22.39077 -21.46533 -20.33475 -19.18608 -18.83158 -18.22932 -17.72887 -17.18359 -16.90961 -16.38301 -16.23231 -15.70726 -15.65351 -15.40396 -15.32776 -14.99718 -14.78326 -14.60472 -14.53174 -14.24592 -13.99320 -13.81758 -13.54040 -13.05242 -12.94861 -12.86882 -12.74228 -12.68433 -12.41699 -12.32421 -12.27207 -12.17225 -11.91010 -11.69284 -11.46649 -11.35446 -11.03874 -10.97042 -10.48539 -10.07888 -9.88955 -9.78483 -9.24379 -8.59790 -7.79752 -5.26676 -0.79881 -0.14708 0.80166 1.51391 1.53760 1.61882 1.81873 2.28465 2.31859 2.56110 3.20216 3.36331 3.36648 3.59169 3.60807 3.78874 3.88879 3.96575 4.04553 4.07523 4.08428 4.18874 4.22592 4.37917 4.45991 4.53012 4.56671 4.65846 4.68234 4.80276 4.93758 4.94261 4.97794 5.00558 5.04774 5.11355 5.13759 5.21747 5.25077 5.33583 5.38183 5.44203 5.54661 5.57266 5.68439 5.75973 5.80710 5.86574 6.45751 6.72207 7.11055 7.20734 7.40606 7.90358 8.45149 9.27094 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.003604 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.560018 B = 7767.773828 C = 8948.375325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.031 0.969 4 C 0.146 3.854 5 H 0.074 0.926 6 N -0.697 5.697 7 C 0.547 3.453 8 O -0.552 6.552 9 C -0.147 4.147 10 C -0.054 4.054 11 C -0.132 4.132 12 C -0.054 4.054 13 C -0.130 4.130 14 C -0.050 4.050 15 C -0.175 4.175 16 C 0.118 3.882 17 N -0.496 5.496 18 C 0.134 3.866 19 C -0.114 4.114 20 C -0.125 4.125 21 C 0.182 3.818 22 N -0.596 5.596 23 C -0.249 4.249 24 H 0.081 0.919 25 C -0.049 4.049 26 N -0.936 5.936 27 Si 0.959 3.041 28 H -0.293 1.293 29 H -0.260 1.260 30 H -0.300 1.300 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.405 0.595 35 H 0.137 0.863 36 H 0.165 0.835 37 H 0.177 0.823 38 H 0.183 0.817 39 H 0.176 0.824 40 H 0.173 0.827 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.060 0.940 45 H -0.005 1.005 46 H 0.057 0.943 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 -15.669 -16.243 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.048 0.952 4 C 0.039 3.961 5 H 0.092 0.908 6 N -0.349 5.349 7 C 0.335 3.665 8 O -0.431 6.431 9 C -0.151 4.151 10 C -0.075 4.075 11 C -0.150 4.150 12 C -0.073 4.073 13 C -0.132 4.132 14 C -0.075 4.075 15 C -0.194 4.194 16 C -0.054 4.054 17 N -0.204 5.204 18 C 0.011 3.989 19 C -0.153 4.153 20 C -0.164 4.164 21 C 0.056 3.944 22 N -0.320 5.320 23 C -0.379 4.379 24 H 0.098 0.902 25 C -0.244 4.244 26 N -0.583 5.583 27 Si 0.788 3.212 28 H -0.221 1.221 29 H -0.184 1.184 30 H -0.227 1.227 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.243 0.757 35 H 0.155 0.845 36 H 0.183 0.817 37 H 0.195 0.805 38 H 0.200 0.800 39 H 0.194 0.806 40 H 0.190 0.810 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.014 0.986 46 H 0.076 0.924 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.659 -14.379 -16.644 22.981 hybrid contribution -0.275 -0.535 1.450 1.570 sum -6.934 -14.914 -15.194 22.391 Atomic orbital electron populations 1.21688 0.94244 1.01669 1.00812 1.20818 0.94495 0.93352 0.86185 0.95169 1.21282 0.92785 0.83454 0.98552 0.90800 1.45867 1.62076 1.18103 1.08831 1.18352 0.78977 0.85791 0.83418 1.90755 1.50133 1.67284 1.34889 1.19965 1.06088 0.95379 0.93667 1.21751 0.93081 0.95811 0.96843 1.21220 0.99621 0.93781 1.00353 1.21650 0.94887 1.00704 0.90036 1.19188 1.02270 0.94519 0.97260 1.21974 0.94881 1.00728 0.89955 1.22304 0.99717 0.95759 1.01628 1.23667 0.93033 0.93082 0.95595 1.68256 1.16765 1.36438 0.98934 1.18883 0.96295 0.91994 0.91708 1.21705 0.95691 1.00447 0.97471 1.22017 0.99597 0.98921 0.95853 1.20648 0.83312 0.95716 0.94743 1.44358 1.02868 1.65501 1.19224 1.19496 0.95601 1.36398 0.86383 0.90163 1.25803 0.98955 1.00837 0.98814 1.70188 1.26064 1.45541 1.16462 0.85385 0.77817 0.78878 0.79120 1.22084 1.18378 1.22742 0.93062 0.92126 0.92574 0.75723 0.84533 0.81716 0.80531 0.79995 0.80635 0.80996 0.93267 0.91431 0.93119 0.92131 0.98644 0.92426 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 7.74 71.98 0.56 -4.04 16 2 C 0.16 6.37 3.19 44.97 0.14 6.52 16 3 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 4 C 0.15 5.47 2.33 45.07 0.10 5.58 16 5 H 0.07 2.84 7.58 -2.39 -0.02 2.82 16 6 N -0.70 -25.02 3.42 -445.42 -1.52 -26.54 16 7 C 0.55 20.73 7.73 86.67 0.67 21.40 16 8 O -0.55 -24.41 14.85 -4.01 -0.06 -24.46 16 9 C -0.15 -4.76 5.91 -19.86 -0.12 -4.88 16 10 C -0.05 -1.38 9.52 22.54 0.21 -1.17 16 11 C -0.13 -2.38 9.93 21.98 0.22 -2.16 16 12 C -0.05 -0.84 9.75 22.37 0.22 -0.62 16 13 C -0.13 -2.76 5.74 -21.29 -0.12 -2.88 16 14 C -0.05 -0.69 9.90 22.52 0.22 -0.47 16 15 C -0.17 -2.51 10.03 22.13 0.22 -2.29 16 16 C 0.12 2.66 11.15 85.02 0.95 3.61 16 17 N -0.50 -16.31 8.44 -187.96 -1.59 -17.89 16 18 C 0.13 4.11 6.61 40.61 0.27 4.38 16 19 C -0.11 -4.28 5.58 30.62 0.17 -4.11 16 20 C -0.12 -4.89 5.94 30.82 0.18 -4.71 16 21 C 0.18 8.55 5.31 86.51 0.46 9.01 16 22 N -0.60 -27.72 2.64 -674.39 -1.78 -29.50 16 23 C -0.25 -12.35 8.57 84.03 0.72 -11.63 16 24 H 0.08 3.76 6.24 -2.91 -0.02 3.75 16 25 C -0.05 -2.56 4.94 84.86 0.42 -2.14 16 26 N -0.94 -53.46 11.21 21.65 0.24 -53.22 16 27 Si 0.96 42.26 29.58 68.60 2.03 44.29 16 28 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 29 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 30 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 31 H 0.05 1.98 7.63 -2.39 -0.02 1.96 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.98 6.40 -2.39 -0.02 1.97 16 34 H 0.41 14.32 5.80 -92.71 -0.54 13.78 16 35 H 0.14 3.42 6.37 -2.91 -0.02 3.40 16 36 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 39 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 43 H 0.05 2.01 7.53 -2.39 -0.02 1.99 16 44 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 45 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.06 3.05 6.12 -2.39 -0.01 3.04 16 47 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -73.40 372.43 3.28 -70.11 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.46 Total: 27.82 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 5.50 Total: 9.40 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -4.64 Total: -127.15 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.06 Total: -24.46 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -73.40 3.28 -70.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.541 kcal (2) G-P(sol) polarization free energy of solvation -73.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds