Wall clock time and date at job start Tue Mar 31 2020 22:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.58510 * 2 1 4 4 C 1.53191 * 109.58919 * 120.28036 * 2 1 3 5 5 H 1.09000 * 109.49923 * 54.43765 * 4 2 1 6 6 N 1.46502 * 109.49688 * 294.37498 * 4 2 1 7 7 C 1.34780 * 119.99731 * 155.00185 * 6 4 2 8 8 O 1.21600 * 120.00065 * 359.97438 * 7 6 4 9 9 C 1.47434 * 119.99477 * 180.02562 * 7 6 4 10 10 C 1.38739 * 120.33498 * 359.97438 * 9 7 6 11 11 C 1.38868 * 120.72392 * 180.02562 * 10 9 7 12 12 C 1.36350 * 121.05787 * 0.23510 * 11 10 9 13 13 C 1.40436 * 120.08684 * 359.48857 * 12 11 10 14 14 C 1.40810 * 121.26679 * 180.21271 * 13 12 11 15 15 C 1.36629 * 118.15480 * 180.29859 * 14 13 12 16 16 C 1.39235 * 119.91077 * 0.02562 * 15 14 13 17 17 N 1.31235 * 121.69218 * 0.02562 * 16 15 14 18 18 C 1.33347 * 121.35346 * 359.97438 * 17 16 15 19 19 C 1.53040 * 109.31409 * 174.42130 * 4 2 1 20 20 C 1.53040 * 109.54004 * 298.63918 * 19 4 2 21 21 C 1.53186 * 109.31481 * 61.35906 * 20 19 4 22 22 N 1.46921 * 108.78025 * 305.37084 * 21 20 19 23 23 C 1.36932 * 120.63245 * 233.58791 * 22 21 20 24 24 H 1.08005 * 120.00635 * 150.17527 * 23 22 21 25 25 C 1.38818 * 119.99793 * 330.17250 * 23 22 21 26 26 N 1.31610 * 119.99973 * 344.49562 * 25 23 22 27 27 Si 1.86802 * 120.00011 * 164.49366 * 25 23 22 28 28 H 1.48498 * 109.47349 * 59.99883 * 27 25 23 29 29 H 1.48496 * 109.47364 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47052 * 300.00384 * 27 25 23 31 31 H 1.09004 * 109.47219 * 299.71529 * 1 2 3 32 32 H 1.08995 * 109.47316 * 59.71780 * 1 2 3 33 33 H 1.09000 * 109.47070 * 179.72072 * 1 2 3 34 34 H 0.96994 * 120.00134 * 334.99535 * 6 4 2 35 35 H 1.07998 * 119.64015 * 0.02562 * 10 9 7 36 36 H 1.08008 * 119.47351 * 179.97438 * 11 10 9 37 37 H 1.08007 * 119.95582 * 179.75077 * 12 11 10 38 38 H 1.07999 * 120.92051 * 0.31840 * 14 13 12 39 39 H 1.07994 * 120.04432 * 180.02562 * 15 14 13 40 40 H 1.07991 * 119.15252 * 179.97438 * 16 15 14 41 41 H 1.09002 * 109.46149 * 58.65461 * 19 4 2 42 42 H 1.08994 * 109.46147 * 178.61437 * 19 4 2 43 43 H 1.08998 * 109.49232 * 301.41143 * 20 19 4 44 44 H 1.08994 * 109.52626 * 181.33271 * 20 19 4 45 45 H 1.09000 * 109.59162 * 185.57576 * 21 20 19 46 46 H 1.09011 * 109.58541 * 65.15452 * 21 20 19 47 47 H 0.97000 * 120.00141 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7277 1.2463 5 1 1.6026 -1.7234 1.2939 6 7 1.6705 0.0299 2.4435 7 6 1.5473 -0.6002 3.6285 8 8 1.7453 -1.7976 3.7039 9 6 1.1713 0.1623 4.8331 10 6 0.9433 1.5286 4.7548 11 6 0.5894 2.2547 5.8843 12 6 0.4610 1.6482 7.0988 13 6 0.6770 0.2660 7.2218 14 6 0.5469 -0.3864 8.4628 15 6 0.7777 -1.7322 8.5110 16 6 1.1310 -2.4179 7.3519 17 7 1.2519 -1.8049 6.1979 18 6 1.0405 -0.4933 6.0835 19 6 3.5675 -0.8464 1.1712 20 6 3.9569 -1.6657 -0.0614 21 6 3.4650 -0.9486 -1.3225 22 7 2.0225 -0.7010 -1.1936 23 6 1.1537 -1.1155 -2.1675 24 1 0.1396 -1.3822 -1.9087 25 6 1.5763 -1.1928 -3.4875 26 7 2.6871 -0.5925 -3.8591 27 14 0.5686 -2.1489 -4.7364 28 1 -0.7919 -1.5610 -4.8291 29 1 1.2300 -2.0791 -6.0640 30 1 0.4666 -3.5674 -4.3086 31 1 -0.3634 0.5094 0.8926 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3633 -1.0277 -0.0050 34 1 1.5123 0.9850 2.3832 35 1 1.0422 2.0330 3.8049 36 1 0.4170 3.3176 5.8003 37 1 0.1888 2.2309 7.9665 38 1 0.2720 0.1618 9.3518 39 1 0.6861 -2.2633 9.4469 40 1 1.3111 -3.4815 7.4041 41 1 4.0062 0.1488 1.0990 42 1 3.9378 -1.3421 2.0685 43 1 3.4983 -2.6527 -0.0018 44 1 5.0411 -1.7701 -0.1018 45 1 3.6518 -1.5745 -2.1952 46 1 3.9902 0.0003 -1.4317 47 1 2.9826 -0.6468 -4.7813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993534473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:24 Heat of formation + Delta-G solvation = 48.628136 kcal Electronic energy + Delta-G solvation = -29277.274336 eV Core-core repulsion = 25425.615239 eV Total energy + Delta-G solvation = -3851.659097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.15340 -39.42838 -37.60725 -37.03882 -34.21474 -33.63470 -32.53440 -31.69240 -30.77664 -30.49124 -28.91261 -26.21328 -25.04169 -24.76242 -23.72900 -23.50025 -21.77815 -20.64309 -20.15040 -19.36581 -18.46866 -17.78868 -17.04178 -16.36357 -16.09518 -15.56094 -15.02562 -14.97463 -14.80501 -14.26908 -14.15600 -14.07563 -13.71903 -13.66702 -13.33708 -13.24088 -13.09462 -12.72218 -12.48734 -12.36036 -11.98353 -11.65915 -11.62774 -11.48521 -11.06741 -10.88265 -10.73141 -10.72180 -10.52108 -10.23531 -10.08741 -10.00956 -9.93035 -9.67263 -9.37580 -9.11663 -9.07452 -8.63722 -8.47613 -8.37896 -6.63332 -5.76834 -3.21286 -0.07292 0.55801 1.54552 2.54589 3.33929 3.36925 3.40783 3.46062 3.48871 4.01936 4.07035 4.29793 4.44505 4.50854 4.55700 4.61599 4.75765 4.84707 5.01051 5.18658 5.32880 5.38130 5.45367 5.57528 5.60412 5.64751 5.68045 5.76757 5.85847 5.90599 6.02524 6.04028 6.14607 6.19920 6.26783 6.39902 6.46116 6.51533 6.60000 6.69938 6.79267 6.80984 6.92355 7.03528 7.13419 7.43984 7.69682 7.79664 7.84438 7.90994 8.47120 8.60499 9.23145 9.85818 10.42768 11.31878 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.002585 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.735927 B =10829.137106 C =11076.542863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.134 3.866 5 H 0.086 0.914 6 N -0.719 5.719 7 C 0.548 3.452 8 O -0.500 6.500 9 C -0.100 4.100 10 C -0.066 4.066 11 C -0.123 4.123 12 C -0.077 4.077 13 C -0.111 4.111 14 C -0.061 4.061 15 C -0.175 4.175 16 C 0.129 3.871 17 N -0.434 5.434 18 C 0.160 3.840 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.170 3.830 22 N -0.582 5.582 23 C -0.252 4.252 24 H 0.069 0.931 25 C 0.005 3.995 26 N -0.902 5.902 27 Si 0.902 3.098 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.391 0.609 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.160 0.840 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.019 0.981 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 5.822 24.881 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.044 0.956 4 C 0.028 3.972 5 H 0.105 0.895 6 N -0.371 5.371 7 C 0.333 3.667 8 O -0.374 6.374 9 C -0.104 4.104 10 C -0.087 4.087 11 C -0.141 4.141 12 C -0.096 4.096 13 C -0.114 4.114 14 C -0.087 4.087 15 C -0.195 4.195 16 C -0.043 4.043 17 N -0.140 5.140 18 C 0.037 3.963 19 C -0.155 4.155 20 C -0.180 4.180 21 C 0.045 3.955 22 N -0.305 5.305 23 C -0.382 4.382 24 H 0.087 0.913 25 C -0.194 4.194 26 N -0.547 5.547 27 Si 0.731 3.269 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.210 1.210 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.177 0.823 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.037 0.963 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.868 4.542 23.871 24.468 hybrid contribution -0.721 0.553 0.150 0.922 sum -3.589 5.095 24.021 24.817 Atomic orbital electron populations 1.21818 0.95716 1.01750 1.00121 1.20555 0.93204 0.93509 0.86690 0.95583 1.21763 0.95016 0.96852 0.83552 0.89543 1.46090 1.70741 1.11919 1.08318 1.17884 0.78684 0.87460 0.82641 1.90848 1.47924 1.13728 1.84880 1.20097 1.03564 0.93563 0.93193 1.21505 0.95145 0.92630 0.99406 1.20851 1.00326 1.00655 0.92292 1.21137 0.97358 0.92808 0.98284 1.18843 1.03030 0.95049 0.94436 1.21445 0.95980 0.94837 0.96444 1.21967 1.01768 0.95340 1.00459 1.23210 0.92833 1.00816 0.87468 1.68359 1.11520 1.08369 1.25775 1.18656 0.96094 0.89784 0.91766 1.21758 0.95473 0.99961 0.98337 1.22179 0.99174 0.99746 0.96882 1.20822 0.83116 0.97146 0.94422 1.44014 1.03136 1.64995 1.18335 1.19121 0.95192 1.37829 0.86024 0.91294 1.25079 0.97900 0.99471 0.96943 1.70014 1.24104 1.43725 1.16810 0.86387 0.79565 0.80334 0.80573 1.20899 1.21678 1.20973 0.94354 0.91801 0.92647 0.77428 0.84594 0.84768 0.84956 0.84349 0.84505 0.82312 0.92864 0.93142 0.92502 0.93064 0.89520 0.96311 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.84 37.16 0.29 -2.29 16 2 C 0.17 3.44 3.03 -67.60 -0.21 3.23 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.13 2.52 2.00 -67.81 -0.14 2.38 16 5 H 0.09 1.89 7.58 -51.93 -0.39 1.49 16 6 N -0.72 -11.17 4.52 -54.76 -0.25 -11.42 16 7 C 0.55 9.30 7.73 -12.51 -0.10 9.21 16 8 O -0.50 -10.45 14.85 5.28 0.08 -10.37 16 9 C -0.10 -1.40 5.91 -104.61 -0.62 -2.01 16 10 C -0.07 -0.66 9.52 -39.16 -0.37 -1.03 16 11 C -0.12 -0.96 9.93 -40.03 -0.40 -1.36 16 12 C -0.08 -0.61 9.75 -39.43 -0.38 -0.99 16 13 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 14 C -0.06 -0.49 9.90 -39.19 -0.39 -0.88 16 15 C -0.18 -1.41 10.03 -39.79 -0.40 -1.81 16 16 C 0.13 1.43 11.15 -17.44 -0.19 1.23 16 17 N -0.43 -6.65 8.44 -10.76 -0.09 -6.74 16 18 C 0.16 2.26 6.61 -84.58 -0.56 1.70 16 19 C -0.12 -2.19 5.46 -26.69 -0.15 -2.34 16 20 C -0.14 -2.85 6.08 -26.61 -0.16 -3.01 16 21 C 0.17 4.09 5.28 -3.72 -0.02 4.07 16 22 N -0.58 -14.34 2.99 -164.78 -0.49 -14.83 16 23 C -0.25 -6.77 8.58 -15.06 -0.13 -6.90 16 24 H 0.07 1.82 6.23 -52.48 -0.33 1.49 16 25 C 0.00 0.13 4.94 -17.43 -0.09 0.05 16 26 N -0.90 -25.95 11.23 55.49 0.62 -25.33 16 27 Si 0.90 21.72 29.58 -169.99 -5.03 16.69 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 31 H 0.04 0.60 7.79 -51.93 -0.40 0.19 16 32 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16 33 H 0.05 1.11 7.40 -51.93 -0.38 0.73 16 34 H 0.39 4.89 6.63 -40.82 -0.27 4.62 16 35 H 0.14 1.06 6.37 -52.49 -0.33 0.72 16 36 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 2.32 6.15 -51.93 -0.32 2.00 16 46 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -34.35 375.64 -10.73 -45.08 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.62 Total: 3.80 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -4.61 Total: -2.54 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.21 Total: -58.32 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.35 -10.73 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.710 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds