Wall clock time and date at job start Tue Mar 31 2020 22:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.58510 * 2 1 4 4 C 1.53191 * 109.58919 * 120.28036 * 2 1 3 5 5 H 1.09000 * 109.49923 * 54.43765 * 4 2 1 6 6 N 1.46502 * 109.49688 * 294.37498 * 4 2 1 7 7 C 1.34780 * 119.99731 * 155.00185 * 6 4 2 8 8 O 1.21600 * 120.00065 * 359.97438 * 7 6 4 9 9 C 1.47434 * 119.99477 * 180.02562 * 7 6 4 10 10 C 1.38739 * 120.33498 * 359.97438 * 9 7 6 11 11 C 1.38868 * 120.72392 * 180.02562 * 10 9 7 12 12 C 1.36350 * 121.05787 * 0.23510 * 11 10 9 13 13 C 1.40436 * 120.08684 * 359.48857 * 12 11 10 14 14 C 1.40810 * 121.26679 * 180.21271 * 13 12 11 15 15 C 1.36629 * 118.15480 * 180.29859 * 14 13 12 16 16 C 1.39235 * 119.91077 * 0.02562 * 15 14 13 17 17 N 1.31235 * 121.69218 * 0.02562 * 16 15 14 18 18 C 1.33347 * 121.35346 * 359.97438 * 17 16 15 19 19 C 1.53040 * 109.31409 * 174.42130 * 4 2 1 20 20 C 1.53040 * 109.54004 * 298.63918 * 19 4 2 21 21 C 1.53186 * 109.31481 * 61.35906 * 20 19 4 22 22 N 1.46921 * 108.78025 * 305.37084 * 21 20 19 23 23 C 1.36932 * 120.63245 * 233.58791 * 22 21 20 24 24 H 1.08005 * 120.00635 * 150.17527 * 23 22 21 25 25 C 1.38818 * 119.99793 * 330.17250 * 23 22 21 26 26 N 1.31610 * 119.99973 * 344.49562 * 25 23 22 27 27 Si 1.86802 * 120.00011 * 164.49366 * 25 23 22 28 28 H 1.48498 * 109.47349 * 59.99883 * 27 25 23 29 29 H 1.48496 * 109.47364 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47052 * 300.00384 * 27 25 23 31 31 H 1.09004 * 109.47219 * 299.71529 * 1 2 3 32 32 H 1.08995 * 109.47316 * 59.71780 * 1 2 3 33 33 H 1.09000 * 109.47070 * 179.72072 * 1 2 3 34 34 H 0.96994 * 120.00134 * 334.99535 * 6 4 2 35 35 H 1.07998 * 119.64015 * 0.02562 * 10 9 7 36 36 H 1.08008 * 119.47351 * 179.97438 * 11 10 9 37 37 H 1.08007 * 119.95582 * 179.75077 * 12 11 10 38 38 H 1.07999 * 120.92051 * 0.31840 * 14 13 12 39 39 H 1.07994 * 120.04432 * 180.02562 * 15 14 13 40 40 H 1.07991 * 119.15252 * 179.97438 * 16 15 14 41 41 H 1.09002 * 109.46149 * 58.65461 * 19 4 2 42 42 H 1.08994 * 109.46147 * 178.61437 * 19 4 2 43 43 H 1.08998 * 109.49232 * 301.41143 * 20 19 4 44 44 H 1.08994 * 109.52626 * 181.33271 * 20 19 4 45 45 H 1.09000 * 109.59162 * 185.57576 * 21 20 19 46 46 H 1.09011 * 109.58541 * 65.15452 * 21 20 19 47 47 H 0.97000 * 120.00141 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7277 1.2463 5 1 1.6026 -1.7234 1.2939 6 7 1.6705 0.0299 2.4435 7 6 1.5473 -0.6002 3.6285 8 8 1.7453 -1.7976 3.7039 9 6 1.1713 0.1623 4.8331 10 6 0.9433 1.5286 4.7548 11 6 0.5894 2.2547 5.8843 12 6 0.4610 1.6482 7.0988 13 6 0.6770 0.2660 7.2218 14 6 0.5469 -0.3864 8.4628 15 6 0.7777 -1.7322 8.5110 16 6 1.1310 -2.4179 7.3519 17 7 1.2519 -1.8049 6.1979 18 6 1.0405 -0.4933 6.0835 19 6 3.5675 -0.8464 1.1712 20 6 3.9569 -1.6657 -0.0614 21 6 3.4650 -0.9486 -1.3225 22 7 2.0225 -0.7010 -1.1936 23 6 1.1537 -1.1155 -2.1675 24 1 0.1396 -1.3822 -1.9087 25 6 1.5763 -1.1928 -3.4875 26 7 2.6871 -0.5925 -3.8591 27 14 0.5686 -2.1489 -4.7364 28 1 -0.7919 -1.5610 -4.8291 29 1 1.2300 -2.0791 -6.0640 30 1 0.4666 -3.5674 -4.3086 31 1 -0.3634 0.5094 0.8926 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3633 -1.0277 -0.0050 34 1 1.5123 0.9850 2.3832 35 1 1.0422 2.0330 3.8049 36 1 0.4170 3.3176 5.8003 37 1 0.1888 2.2309 7.9665 38 1 0.2720 0.1618 9.3518 39 1 0.6861 -2.2633 9.4469 40 1 1.3111 -3.4815 7.4041 41 1 4.0062 0.1488 1.0990 42 1 3.9378 -1.3421 2.0685 43 1 3.4983 -2.6527 -0.0018 44 1 5.0411 -1.7701 -0.1018 45 1 3.6518 -1.5745 -2.1952 46 1 3.9902 0.0003 -1.4317 47 1 2.9826 -0.6468 -4.7813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993534473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:23 Heat of formation + Delta-G solvation = 26.936021 kcal Electronic energy + Delta-G solvation = -29278.214977 eV Core-core repulsion = 25425.615239 eV Total energy + Delta-G solvation = -3852.599738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.96615 -40.74798 -39.12223 -37.87350 -35.85595 -34.49061 -34.17966 -33.42070 -31.70376 -31.42404 -30.38893 -27.88534 -26.88753 -25.63882 -24.68868 -24.37061 -23.26921 -22.34001 -21.40683 -20.98059 -19.22061 -18.80297 -18.23897 -17.82317 -17.20081 -16.99294 -16.55069 -16.10613 -15.67311 -15.63436 -15.57538 -15.29051 -15.04408 -14.93697 -14.75647 -14.44464 -14.31694 -14.02283 -13.83618 -13.36208 -13.23815 -13.02866 -12.80355 -12.73482 -12.68771 -12.54161 -12.38726 -12.27560 -12.02743 -11.83065 -11.79148 -11.62124 -11.45726 -11.20874 -10.97773 -10.52594 -10.09576 -9.99455 -9.78171 -9.25177 -8.64837 -7.85869 -5.32183 -0.80171 -0.14390 0.78986 1.46134 1.49386 1.55132 1.82053 2.12251 2.27976 2.53772 3.19547 3.29501 3.36645 3.53389 3.66697 3.78735 3.86108 3.91437 3.99564 4.05241 4.07452 4.18823 4.22326 4.35044 4.44960 4.50680 4.54419 4.61001 4.68873 4.78450 4.87234 4.91338 4.94345 5.00958 5.02314 5.11450 5.12384 5.22425 5.23870 5.28462 5.38915 5.43783 5.49001 5.57647 5.61300 5.70033 5.75508 5.86863 6.41844 6.64041 7.10572 7.16173 7.37073 7.86083 8.38445 9.21117 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.002585 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.735927 B =10829.137106 C =11076.542863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.167 3.833 3 H 0.037 0.963 4 C 0.150 3.850 5 H 0.051 0.949 6 N -0.707 5.707 7 C 0.548 3.452 8 O -0.552 6.552 9 C -0.150 4.150 10 C -0.047 4.047 11 C -0.129 4.129 12 C -0.056 4.056 13 C -0.131 4.131 14 C -0.050 4.050 15 C -0.177 4.177 16 C 0.116 3.884 17 N -0.501 5.501 18 C 0.130 3.870 19 C -0.108 4.108 20 C -0.129 4.129 21 C 0.178 3.822 22 N -0.600 5.600 23 C -0.256 4.256 24 H 0.070 0.930 25 C -0.046 4.046 26 N -0.932 5.932 27 Si 0.961 3.039 28 H -0.274 1.274 29 H -0.293 1.293 30 H -0.284 1.284 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.036 0.964 34 H 0.408 0.592 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.183 0.817 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.007 0.993 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 8.526 28.346 29.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.060 3.940 3 H 0.055 0.945 4 C 0.044 3.956 5 H 0.070 0.930 6 N -0.360 5.360 7 C 0.336 3.664 8 O -0.430 6.430 9 C -0.154 4.154 10 C -0.067 4.067 11 C -0.147 4.147 12 C -0.074 4.074 13 C -0.133 4.133 14 C -0.075 4.075 15 C -0.196 4.196 16 C -0.056 4.056 17 N -0.209 5.209 18 C 0.007 3.993 19 C -0.147 4.147 20 C -0.169 4.169 21 C 0.052 3.948 22 N -0.324 5.324 23 C -0.386 4.386 24 H 0.087 0.913 25 C -0.242 4.242 26 N -0.578 5.578 27 Si 0.789 3.211 28 H -0.199 1.199 29 H -0.219 1.219 30 H -0.210 1.210 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.246 0.754 35 H 0.173 0.827 36 H 0.192 0.808 37 H 0.194 0.806 38 H 0.201 0.799 39 H 0.191 0.809 40 H 0.185 0.815 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.025 0.975 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.251 7.284 27.369 28.639 hybrid contribution -0.328 -0.243 -0.749 0.853 sum -4.579 7.041 26.620 27.914 Atomic orbital electron populations 1.21726 0.94537 1.00915 1.01296 1.20697 0.94214 0.93544 0.85532 0.94496 1.21260 0.94717 0.95361 0.84285 0.93049 1.45822 1.70606 1.12479 1.07086 1.18468 0.77301 0.87127 0.83549 1.90806 1.50389 1.16131 1.85702 1.19916 1.08460 0.95064 0.91931 1.21840 0.92503 0.91019 1.01332 1.21295 0.99676 1.02352 0.91353 1.21690 0.94168 0.91705 0.99844 1.19195 1.03431 0.96355 0.94294 1.21992 0.93785 0.94891 0.96847 1.22284 1.00906 0.95847 1.00562 1.23611 0.92410 1.01637 0.87908 1.68262 1.14457 1.09973 1.28186 1.18987 0.97230 0.89959 0.93121 1.21668 0.95502 1.00321 0.97178 1.22025 1.00289 0.98655 0.95942 1.20616 0.83224 0.96169 0.94763 1.44248 1.03146 1.65801 1.19182 1.19388 0.95481 1.37104 0.86662 0.91266 1.25759 0.99111 1.00673 0.98637 1.70150 1.25630 1.45242 1.16755 0.85446 0.78539 0.78895 0.78201 1.19926 1.21931 1.21049 0.90776 0.92927 0.94447 0.75402 0.82716 0.80846 0.80627 0.79928 0.80854 0.81495 0.91349 0.93362 0.94045 0.90913 0.92750 0.97475 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 7.84 71.98 0.56 -4.23 16 2 C 0.17 6.85 3.03 44.97 0.14 6.98 16 3 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 4 C 0.15 5.79 2.00 45.07 0.09 5.88 16 5 H 0.05 2.37 7.58 -2.39 -0.02 2.35 16 6 N -0.71 -21.97 4.52 -445.42 -2.02 -23.98 16 7 C 0.55 19.25 7.73 86.67 0.67 19.92 16 8 O -0.55 -24.74 14.85 -4.03 -0.06 -24.80 16 9 C -0.15 -4.17 5.91 -19.86 -0.12 -4.28 16 10 C -0.05 -0.82 9.52 22.54 0.21 -0.60 16 11 C -0.13 -1.43 9.93 21.98 0.22 -1.21 16 12 C -0.06 -0.61 9.75 22.36 0.22 -0.39 16 13 C -0.13 -2.39 5.74 -21.29 -0.12 -2.52 16 14 C -0.05 -0.61 9.90 22.52 0.22 -0.39 16 15 C -0.18 -2.43 10.03 22.13 0.22 -2.21 16 16 C 0.12 2.61 11.15 85.02 0.95 3.56 16 17 N -0.50 -16.18 8.44 -187.96 -1.59 -17.76 16 18 C 0.13 3.68 6.61 40.61 0.27 3.95 16 19 C -0.11 -4.10 5.46 30.62 0.17 -3.94 16 20 C -0.13 -5.40 6.08 30.67 0.19 -5.22 16 21 C 0.18 8.82 5.28 86.36 0.46 9.27 16 22 N -0.60 -30.36 2.99 -675.24 -2.02 -32.37 16 23 C -0.26 -14.10 8.58 84.04 0.72 -13.38 16 24 H 0.07 3.73 6.23 -2.91 -0.02 3.72 16 25 C -0.05 -2.60 4.94 84.86 0.42 -2.18 16 26 N -0.93 -55.12 11.23 21.65 0.24 -54.88 16 27 Si 0.96 45.61 29.58 68.60 2.03 47.64 16 28 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 29 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 30 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 31 H 0.07 2.22 7.79 -2.38 -0.02 2.20 16 32 H 0.05 2.09 7.67 -2.39 -0.02 2.07 16 33 H 0.04 1.52 7.40 -2.39 -0.02 1.50 16 34 H 0.41 9.61 6.63 -92.71 -0.61 9.00 16 35 H 0.16 1.92 6.37 -2.91 -0.02 1.90 16 36 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 37 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 38 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 39 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.17 3.04 8.06 -2.92 -0.02 3.01 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 44 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.05 3.04 6.15 -2.39 -0.01 3.02 16 46 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 47 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -81.96 375.64 2.46 -79.50 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.38 Total: 17.63 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.48 Total: 9.02 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -5.37 Total: -128.99 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.06 Total: -24.80 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -81.96 2.46 -79.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993534473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.440 kcal (2) G-P(sol) polarization free energy of solvation -81.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds