Wall clock time and date at job start Tue Mar 31 2020 22:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.58461 * 2 1 4 4 C 1.53186 * 109.58431 * 120.28767 * 2 1 3 5 5 H 1.09004 * 109.49886 * 294.36831 * 4 2 1 6 6 N 1.46494 * 109.50150 * 54.47322 * 4 2 1 7 7 C 1.34782 * 120.00180 * 205.00160 * 6 4 2 8 8 O 1.21545 * 119.99658 * 359.97438 * 7 6 4 9 9 C 1.47897 * 120.00034 * 179.97438 * 7 6 4 10 10 C 1.38894 * 121.11704 * 0.04783 * 9 7 6 11 11 C 1.39264 * 119.58459 * 179.69422 * 10 9 7 12 12 N 1.30998 * 121.87996 * 0.64622 * 11 10 9 13 13 C 1.33528 * 121.82998 * 359.65473 * 12 11 10 14 14 C 1.40716 * 120.97369 * 180.02562 * 13 12 11 15 15 C 1.36054 * 119.74642 * 179.97438 * 14 13 12 16 16 C 1.39355 * 121.05399 * 0.02562 * 15 14 13 17 17 C 1.36246 * 120.83827 * 359.97438 * 16 15 14 18 18 C 1.40110 * 119.64456 * 0.02562 * 17 16 15 19 19 C 1.53081 * 109.29331 * 174.28378 * 4 2 1 20 20 C 1.53042 * 109.65456 * 298.84211 * 19 4 2 21 21 C 1.53197 * 109.31364 * 61.30083 * 20 19 4 22 22 N 1.46921 * 108.77582 * 305.36797 * 21 20 19 23 23 C 1.36933 * 120.62951 * 233.62825 * 22 21 20 24 24 H 1.07999 * 120.00534 * 149.61550 * 23 22 21 25 25 C 1.38815 * 120.00090 * 329.61849 * 23 22 21 26 26 N 1.31621 * 120.00427 * 161.72912 * 25 23 22 27 27 Si 1.86803 * 119.99764 * 341.72791 * 25 23 22 28 28 H 1.48500 * 109.47000 * 87.02911 * 27 25 23 29 29 H 1.48502 * 109.47115 * 207.03060 * 27 25 23 30 30 H 1.48508 * 109.46905 * 327.02969 * 27 25 23 31 31 H 1.09002 * 109.46899 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47302 * 299.99630 * 1 2 3 33 33 H 1.08999 * 109.46802 * 60.00022 * 1 2 3 34 34 H 0.96998 * 119.99934 * 24.99455 * 6 4 2 35 35 H 1.07998 * 120.20412 * 0.02562 * 10 9 7 36 36 H 1.07994 * 119.06233 * 180.32317 * 11 10 9 37 37 H 1.08005 * 120.12442 * 0.02562 * 14 13 12 38 38 H 1.07994 * 119.47559 * 179.97438 * 15 14 13 39 39 H 1.07997 * 119.58013 * 179.97438 * 16 15 14 40 40 H 1.07998 * 120.17765 * 180.02562 * 17 16 15 41 41 H 1.08998 * 109.45125 * 178.75636 * 19 4 2 42 42 H 1.08988 * 109.34958 * 58.86393 * 19 4 2 43 43 H 1.09005 * 109.50277 * 301.35100 * 20 19 4 44 44 H 1.09002 * 109.52615 * 181.26906 * 20 19 4 45 45 H 1.08994 * 109.58926 * 185.57256 * 21 20 19 46 46 H 1.09001 * 109.58209 * 65.15061 * 21 20 19 47 47 H 0.96995 * 120.00388 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 1.2462 5 1 1.7661 -0.1642 2.1370 6 7 1.4515 -2.0664 1.3096 7 6 1.3284 -2.6934 2.4963 8 8 1.7091 -2.1485 3.5138 9 6 0.7301 -4.0445 2.5602 10 6 0.2883 -4.6889 1.4119 11 6 -0.2642 -5.9636 1.5083 12 7 -0.3938 -6.5764 2.6588 13 6 0.0030 -6.0157 3.8039 14 6 -0.1443 -6.6905 5.0299 15 6 0.2692 -6.0960 6.1816 16 6 0.8384 -4.8240 6.1698 17 6 0.9970 -4.1406 5.0019 18 6 0.5824 -4.7225 3.7967 19 6 3.5675 -0.8494 1.1690 20 6 3.9569 -1.6656 -0.0656 21 6 3.4650 -0.9452 -1.3250 22 7 2.0226 -0.6979 -1.1954 23 6 1.1537 -1.1106 -2.1700 24 1 0.1424 -1.3865 -1.9103 25 6 1.5728 -1.1744 -3.4918 26 7 0.8946 -1.8905 -4.3634 27 14 3.0992 -0.2438 -4.0337 28 1 4.3000 -1.0873 -3.8061 29 1 2.9917 0.0853 -5.4778 30 1 3.2192 1.0106 -3.2477 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.1479 -2.5013 0.4974 35 1 0.3777 -4.2067 0.4497 36 1 -0.6002 -6.4591 0.6094 37 1 -0.5832 -7.6770 5.0563 38 1 0.1536 -6.6177 7.1201 39 1 1.1580 -4.3744 7.0983 40 1 1.4399 -3.1556 5.0051 41 1 3.9378 -1.3475 2.0651 42 1 4.0061 0.1459 1.0994 43 1 3.4983 -2.6529 -0.0088 44 1 5.0412 -1.7700 -0.1063 45 1 3.6519 -1.5688 -2.1992 46 1 3.9903 0.0039 -1.4317 47 1 1.1877 -1.9354 -5.2870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993574210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:28 Heat of formation + Delta-G solvation = 51.925537 kcal Electronic energy + Delta-G solvation = -30082.333712 eV Core-core repulsion = 26230.817601 eV Total energy + Delta-G solvation = -3851.516111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.15797 -39.71291 -37.90807 -37.16457 -34.25299 -33.53415 -32.71876 -31.87314 -30.66680 -30.49737 -29.61566 -26.65400 -25.21075 -24.88095 -23.63584 -23.11738 -22.29715 -21.19113 -20.48543 -19.12408 -18.25724 -17.63758 -17.31853 -16.58627 -15.81614 -15.51052 -15.39192 -15.19661 -14.81801 -14.67352 -14.34323 -14.11598 -13.95158 -13.59449 -13.52122 -13.48971 -13.21792 -13.02493 -12.60232 -12.19789 -11.87572 -11.81256 -11.74079 -11.64309 -11.43092 -11.35225 -10.90491 -10.74052 -10.64670 -10.50888 -10.35970 -10.23817 -10.08890 -9.59227 -9.57717 -9.24109 -8.88930 -8.82863 -8.68520 -8.32080 -7.06029 -6.05958 -3.47023 0.03821 0.71249 1.66320 2.74222 3.17092 3.23506 3.24356 3.42167 3.43939 4.07168 4.16567 4.43474 4.55200 4.62276 4.65954 4.75524 4.75884 5.03134 5.09793 5.13215 5.26285 5.27705 5.35852 5.41486 5.47662 5.56566 5.62316 5.72689 5.84986 5.94390 5.96944 5.98023 6.03799 6.17930 6.20889 6.21945 6.25851 6.34950 6.39579 6.43388 6.48492 6.62123 6.65283 6.71117 6.79173 6.85378 6.93419 7.71624 7.76973 7.85533 8.22036 8.31890 8.81160 9.60537 9.97763 11.08986 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.003423 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.349757 B = 8177.583231 C = 9010.463965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.162 3.838 3 H 0.047 0.953 4 C 0.132 3.868 5 H 0.084 0.916 6 N -0.689 5.689 7 C 0.557 3.443 8 O -0.541 6.541 9 C -0.069 4.069 10 C -0.133 4.133 11 C 0.130 3.870 12 N -0.463 5.463 13 C 0.121 3.879 14 C -0.100 4.100 15 C -0.101 4.101 16 C -0.124 4.124 17 C -0.098 4.098 18 C -0.066 4.066 19 C -0.123 4.123 20 C -0.133 4.133 21 C 0.123 3.877 22 N -0.603 5.603 23 C -0.268 4.268 24 H 0.092 0.908 25 C 0.030 3.970 26 N -0.906 5.906 27 Si 0.885 3.115 28 H -0.287 1.287 29 H -0.305 1.305 30 H -0.273 1.273 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.412 0.588 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.170 0.830 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.024 0.976 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 -4.947 16.134 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.055 3.945 3 H 0.064 0.936 4 C 0.026 3.974 5 H 0.102 0.898 6 N -0.340 5.340 7 C 0.343 3.657 8 O -0.421 6.421 9 C -0.081 4.081 10 C -0.154 4.154 11 C -0.042 4.042 12 N -0.171 5.171 13 C 0.000 4.000 14 C -0.119 4.119 15 C -0.121 4.121 16 C -0.143 4.143 17 C -0.116 4.116 18 C -0.069 4.069 19 C -0.161 4.161 20 C -0.172 4.172 21 C -0.002 4.002 22 N -0.328 5.328 23 C -0.396 4.396 24 H 0.109 0.891 25 C -0.170 4.170 26 N -0.548 5.548 27 Si 0.715 3.285 28 H -0.215 1.215 29 H -0.233 1.233 30 H -0.198 1.198 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.250 0.750 35 H 0.167 0.833 36 H 0.185 0.815 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.187 0.813 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.042 0.958 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.055 -5.414 16.758 17.611 hybrid contribution 1.167 1.041 -1.066 1.893 sum 1.221 -4.373 15.692 16.336 Atomic orbital electron populations 1.21801 0.94770 1.01976 1.00882 1.20758 0.94084 0.93836 0.85797 0.93589 1.21619 0.92839 0.82759 1.00140 0.89759 1.45969 1.60554 1.18575 1.08866 1.18033 0.78897 0.84636 0.84119 1.90532 1.50954 1.66793 1.33797 1.20441 0.99099 0.95007 0.93506 1.22626 0.97158 0.96473 0.99177 1.22971 0.93850 0.91494 0.95885 1.67814 1.15552 1.35658 0.98103 1.18903 0.97121 0.91160 0.92862 1.20756 1.00751 1.00247 0.90122 1.20957 0.97551 0.95420 0.98140 1.21077 0.99663 0.94871 0.98641 1.22125 0.96687 1.02244 0.90563 1.18689 0.99812 0.94661 0.93734 1.21797 0.95440 1.00620 0.98259 1.21959 0.99409 0.99802 0.96030 1.21418 0.84998 0.97187 0.96635 1.44496 1.02176 1.65772 1.20349 1.18869 0.96278 1.38926 0.85510 0.89064 1.25340 0.97539 0.98321 0.95758 1.69785 1.41072 1.39936 1.04032 0.86986 0.83325 0.81476 0.76668 1.21456 1.23315 1.19805 0.92490 0.93887 0.91299 0.74969 0.83288 0.81484 0.84778 0.85473 0.85579 0.81277 0.92377 0.91548 0.91965 0.92811 0.90639 0.95773 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 7.73 37.16 0.29 -1.98 16 2 C 0.16 2.82 3.19 -67.60 -0.22 2.60 16 3 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.13 2.06 2.34 -67.80 -0.16 1.91 16 5 H 0.08 1.30 7.58 -51.93 -0.39 0.90 16 6 N -0.69 -10.50 3.43 -54.60 -0.19 -10.69 16 7 C 0.56 8.63 7.74 -12.30 -0.10 8.54 16 8 O -0.54 -9.19 13.16 5.33 0.07 -9.12 16 9 C -0.07 -1.01 5.94 -104.34 -0.62 -1.62 16 10 C -0.13 -1.72 9.61 -38.96 -0.37 -2.10 16 11 C 0.13 1.60 11.14 -17.53 -0.20 1.40 16 12 N -0.46 -6.40 10.30 -11.01 -0.11 -6.51 16 13 C 0.12 1.69 6.61 -84.87 -0.56 1.13 16 14 C -0.10 -1.15 9.98 -39.43 -0.39 -1.54 16 15 C -0.10 -1.00 9.94 -39.95 -0.40 -1.39 16 16 C -0.12 -1.35 9.96 -39.88 -0.40 -1.75 16 17 C -0.10 -1.33 9.25 -39.60 -0.37 -1.69 16 18 C -0.07 -0.96 5.76 -106.52 -0.61 -1.58 16 19 C -0.12 -1.87 5.57 -26.67 -0.15 -2.02 16 20 C -0.13 -2.20 5.93 -26.61 -0.16 -2.35 16 21 C 0.12 2.43 4.20 -3.71 -0.02 2.42 16 22 N -0.60 -12.43 2.40 -164.78 -0.40 -12.82 16 23 C -0.27 -6.51 9.01 -15.06 -0.14 -6.64 16 24 H 0.09 2.32 6.43 -52.49 -0.34 1.98 16 25 C 0.03 0.80 5.25 -17.43 -0.09 0.71 16 26 N -0.91 -25.68 13.97 55.49 0.78 -24.91 16 27 Si 0.88 21.11 24.35 -169.99 -4.14 16.97 16 28 H -0.29 -6.62 6.42 56.52 0.36 -6.26 16 29 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 30 H -0.27 -6.48 6.91 56.52 0.39 -6.08 16 31 H 0.06 0.96 6.38 -51.93 -0.33 0.63 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.25 7.65 -51.93 -0.40 0.86 16 34 H 0.41 6.48 5.92 -40.82 -0.24 6.23 16 35 H 0.15 1.80 6.51 -52.49 -0.34 1.46 16 36 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.17 2.47 4.96 -52.49 -0.26 2.21 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.96 8.14 -51.94 -0.42 0.53 16 43 H 0.06 1.06 7.54 -51.93 -0.39 0.67 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.66 4.59 -51.93 -0.24 1.42 16 46 H 0.02 0.48 7.18 -51.93 -0.37 0.11 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -29.24 363.17 -9.46 -38.70 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.30 Total: 8.89 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -4.65 Total: -5.98 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.08 Total: -54.93 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.14 Total: 16.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.24 -9.46 -38.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993574210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.624 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds