Wall clock time and date at job start Tue Mar 31 2020 22:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.58461 * 2 1 4 4 C 1.53186 * 109.58431 * 120.28767 * 2 1 3 5 5 H 1.09004 * 109.49886 * 294.36831 * 4 2 1 6 6 N 1.46494 * 109.50150 * 54.47322 * 4 2 1 7 7 C 1.34782 * 120.00180 * 205.00160 * 6 4 2 8 8 O 1.21545 * 119.99658 * 359.97438 * 7 6 4 9 9 C 1.47897 * 120.00034 * 179.97438 * 7 6 4 10 10 C 1.38894 * 121.11704 * 0.04783 * 9 7 6 11 11 C 1.39264 * 119.58459 * 179.69422 * 10 9 7 12 12 N 1.30998 * 121.87996 * 0.64622 * 11 10 9 13 13 C 1.33528 * 121.82998 * 359.65473 * 12 11 10 14 14 C 1.40716 * 120.97369 * 180.02562 * 13 12 11 15 15 C 1.36054 * 119.74642 * 179.97438 * 14 13 12 16 16 C 1.39355 * 121.05399 * 0.02562 * 15 14 13 17 17 C 1.36246 * 120.83827 * 359.97438 * 16 15 14 18 18 C 1.40110 * 119.64456 * 0.02562 * 17 16 15 19 19 C 1.53081 * 109.29331 * 174.28378 * 4 2 1 20 20 C 1.53042 * 109.65456 * 298.84211 * 19 4 2 21 21 C 1.53197 * 109.31364 * 61.30083 * 20 19 4 22 22 N 1.46921 * 108.77582 * 305.36797 * 21 20 19 23 23 C 1.36933 * 120.62951 * 233.62825 * 22 21 20 24 24 H 1.07999 * 120.00534 * 149.61550 * 23 22 21 25 25 C 1.38815 * 120.00090 * 329.61849 * 23 22 21 26 26 N 1.31621 * 120.00427 * 161.72912 * 25 23 22 27 27 Si 1.86803 * 119.99764 * 341.72791 * 25 23 22 28 28 H 1.48500 * 109.47000 * 87.02911 * 27 25 23 29 29 H 1.48502 * 109.47115 * 207.03060 * 27 25 23 30 30 H 1.48508 * 109.46905 * 327.02969 * 27 25 23 31 31 H 1.09002 * 109.46899 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47302 * 299.99630 * 1 2 3 33 33 H 1.08999 * 109.46802 * 60.00022 * 1 2 3 34 34 H 0.96998 * 119.99934 * 24.99455 * 6 4 2 35 35 H 1.07998 * 120.20412 * 0.02562 * 10 9 7 36 36 H 1.07994 * 119.06233 * 180.32317 * 11 10 9 37 37 H 1.08005 * 120.12442 * 0.02562 * 14 13 12 38 38 H 1.07994 * 119.47559 * 179.97438 * 15 14 13 39 39 H 1.07997 * 119.58013 * 179.97438 * 16 15 14 40 40 H 1.07998 * 120.17765 * 180.02562 * 17 16 15 41 41 H 1.08998 * 109.45125 * 178.75636 * 19 4 2 42 42 H 1.08988 * 109.34958 * 58.86393 * 19 4 2 43 43 H 1.09005 * 109.50277 * 301.35100 * 20 19 4 44 44 H 1.09002 * 109.52615 * 181.26906 * 20 19 4 45 45 H 1.08994 * 109.58926 * 185.57256 * 21 20 19 46 46 H 1.09001 * 109.58209 * 65.15061 * 21 20 19 47 47 H 0.96995 * 120.00388 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 1.2462 5 1 1.7661 -0.1642 2.1370 6 7 1.4515 -2.0664 1.3096 7 6 1.3284 -2.6934 2.4963 8 8 1.7091 -2.1485 3.5138 9 6 0.7301 -4.0445 2.5602 10 6 0.2883 -4.6889 1.4119 11 6 -0.2642 -5.9636 1.5083 12 7 -0.3938 -6.5764 2.6588 13 6 0.0030 -6.0157 3.8039 14 6 -0.1443 -6.6905 5.0299 15 6 0.2692 -6.0960 6.1816 16 6 0.8384 -4.8240 6.1698 17 6 0.9970 -4.1406 5.0019 18 6 0.5824 -4.7225 3.7967 19 6 3.5675 -0.8494 1.1690 20 6 3.9569 -1.6656 -0.0656 21 6 3.4650 -0.9452 -1.3250 22 7 2.0226 -0.6979 -1.1954 23 6 1.1537 -1.1106 -2.1700 24 1 0.1424 -1.3865 -1.9103 25 6 1.5728 -1.1744 -3.4918 26 7 0.8946 -1.8905 -4.3634 27 14 3.0992 -0.2438 -4.0337 28 1 4.3000 -1.0873 -3.8061 29 1 2.9917 0.0853 -5.4778 30 1 3.2192 1.0106 -3.2477 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.1479 -2.5013 0.4974 35 1 0.3777 -4.2067 0.4497 36 1 -0.6002 -6.4591 0.6094 37 1 -0.5832 -7.6770 5.0563 38 1 0.1536 -6.6177 7.1201 39 1 1.1580 -4.3744 7.0983 40 1 1.4399 -3.1556 5.0051 41 1 3.9378 -1.3475 2.0651 42 1 4.0061 0.1459 1.0994 43 1 3.4983 -2.6529 -0.0088 44 1 5.0412 -1.7700 -0.1063 45 1 3.6519 -1.5688 -2.1992 46 1 3.9903 0.0039 -1.4317 47 1 1.1877 -1.9354 -5.2870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993574210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:27 Heat of formation + Delta-G solvation = 35.504930 kcal Electronic energy + Delta-G solvation = -30083.045763 eV Core-core repulsion = 26230.817601 eV Total energy + Delta-G solvation = -3852.228162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.19326 -40.94302 -39.28299 -38.08046 -35.74770 -34.65158 -34.13703 -33.49939 -31.97565 -31.51460 -30.71899 -28.08193 -26.71830 -26.14674 -24.60164 -24.36989 -23.57263 -22.50185 -21.79446 -20.52090 -19.26223 -18.68198 -18.47747 -18.16495 -17.31573 -16.90277 -16.60603 -16.41640 -15.99026 -15.77114 -15.50375 -15.45787 -15.23419 -14.89972 -14.78383 -14.75906 -14.30682 -14.25553 -14.04007 -13.81846 -13.40418 -13.19180 -12.78338 -12.74740 -12.61576 -12.53980 -12.33836 -12.25379 -12.13978 -11.94363 -11.65565 -11.55465 -11.41272 -11.34252 -11.19883 -10.58945 -10.32948 -10.07220 -9.81684 -9.27738 -8.83839 -8.08527 -5.43491 -0.96304 -0.23391 0.68448 1.33633 1.46297 1.52327 1.73778 2.04328 2.11375 2.47558 3.09104 3.11711 3.26884 3.29488 3.46709 3.62561 3.69204 3.85758 3.90731 3.97828 4.07423 4.18051 4.22565 4.24639 4.42005 4.48012 4.51084 4.54363 4.59633 4.61956 4.76933 4.82828 4.85522 4.92052 4.99733 5.06441 5.06969 5.10549 5.19508 5.26588 5.35261 5.35435 5.44167 5.49173 5.52360 5.64414 5.90150 5.96373 6.24641 6.47912 6.77824 6.96831 7.09801 7.68817 8.09538 9.09878 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.003423 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.349757 B = 8177.583231 C = 9010.463965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.160 3.840 3 H 0.057 0.943 4 C 0.139 3.861 5 H 0.093 0.907 6 N -0.688 5.688 7 C 0.560 3.440 8 O -0.557 6.557 9 C -0.089 4.089 10 C -0.130 4.130 11 C 0.124 3.876 12 N -0.473 5.473 13 C 0.099 3.901 14 C -0.108 4.108 15 C -0.091 4.091 16 C -0.112 4.112 17 C -0.125 4.125 18 C -0.083 4.083 19 C -0.117 4.117 20 C -0.123 4.123 21 C 0.119 3.881 22 N -0.611 5.611 23 C -0.234 4.234 24 H 0.075 0.925 25 C -0.026 4.026 26 N -0.953 5.953 27 Si 0.934 3.066 28 H -0.276 1.276 29 H -0.322 1.322 30 H -0.268 1.268 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.409 0.591 35 H 0.153 0.847 36 H 0.194 0.806 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.030 0.970 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 -5.170 18.942 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 H 0.074 0.926 4 C 0.033 3.967 5 H 0.111 0.889 6 N -0.338 5.338 7 C 0.347 3.653 8 O -0.438 6.438 9 C -0.100 4.100 10 C -0.151 4.151 11 C -0.047 4.047 12 N -0.182 5.182 13 C -0.022 4.022 14 C -0.126 4.126 15 C -0.110 4.110 16 C -0.129 4.129 17 C -0.144 4.144 18 C -0.086 4.086 19 C -0.155 4.155 20 C -0.163 4.163 21 C -0.006 4.006 22 N -0.337 5.337 23 C -0.363 4.363 24 H 0.092 0.908 25 C -0.221 4.221 26 N -0.600 5.600 27 Si 0.765 3.235 28 H -0.203 1.203 29 H -0.252 1.252 30 H -0.193 1.193 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.247 0.753 35 H 0.170 0.830 36 H 0.211 0.789 37 H 0.169 0.831 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.831 -5.618 19.618 20.424 hybrid contribution 0.878 1.082 -1.759 2.244 sum 1.709 -4.537 17.859 18.505 Atomic orbital electron populations 1.21735 0.94380 1.01590 1.01163 1.20928 0.94472 0.94182 0.84966 0.92554 1.21524 0.93206 0.82790 0.99198 0.88921 1.45941 1.60641 1.18488 1.08734 1.18155 0.78475 0.84927 0.83726 1.90526 1.51690 1.67333 1.34212 1.20447 1.00365 0.94833 0.94343 1.22705 0.96750 0.96736 0.98872 1.23394 0.93490 0.91323 0.96532 1.67863 1.15810 1.35960 0.98532 1.19290 0.97710 0.91369 0.93861 1.21087 1.00807 1.00996 0.89742 1.21374 0.95605 0.94839 0.99192 1.21459 0.97798 0.94958 0.98733 1.22071 0.98540 1.02313 0.91438 1.18879 1.00454 0.95198 0.94066 1.21763 0.94979 1.01234 0.97542 1.21843 1.00507 0.99042 0.94867 1.21433 0.84408 0.97341 0.97419 1.44589 1.02302 1.66370 1.20398 1.18851 0.95884 1.35703 0.85883 0.90768 1.25829 1.00071 0.99936 0.96294 1.69899 1.43328 1.42637 1.04102 0.86173 0.81476 0.80699 0.75173 1.20319 1.25151 1.19252 0.93249 0.91301 0.93273 0.75348 0.82982 0.78878 0.83080 0.81557 0.82787 0.82736 0.92025 0.90033 0.92828 0.90797 0.92940 0.95210 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.73 71.98 0.56 -3.68 16 2 C 0.16 5.31 3.19 44.97 0.14 5.46 16 3 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.14 4.07 2.34 45.08 0.11 4.17 16 5 H 0.09 2.64 7.58 -2.38 -0.02 2.62 16 6 N -0.69 -20.47 3.43 -444.93 -1.52 -22.00 16 7 C 0.56 17.17 7.74 86.80 0.67 17.84 16 8 O -0.56 -18.63 13.16 -3.86 -0.05 -18.69 16 9 C -0.09 -2.58 5.94 -19.68 -0.12 -2.70 16 10 C -0.13 -3.37 9.61 22.67 0.22 -3.15 16 11 C 0.12 3.00 11.14 85.06 0.95 3.95 16 12 N -0.47 -12.76 10.30 -188.74 -1.94 -14.70 16 13 C 0.10 2.68 6.61 40.35 0.27 2.95 16 14 C -0.11 -2.24 9.98 22.37 0.22 -2.02 16 15 C -0.09 -1.49 9.94 22.03 0.22 -1.27 16 16 C -0.11 -2.14 9.96 22.07 0.22 -1.92 16 17 C -0.13 -3.29 9.25 22.26 0.21 -3.09 16 18 C -0.08 -2.40 5.76 -21.09 -0.12 -2.52 16 19 C -0.12 -3.27 5.57 30.64 0.17 -3.10 16 20 C -0.12 -3.84 5.93 30.67 0.18 -3.66 16 21 C 0.12 4.52 4.20 86.37 0.36 4.88 16 22 N -0.61 -24.66 2.40 -675.24 -1.62 -26.28 16 23 C -0.23 -11.44 9.01 84.03 0.76 -10.69 16 24 H 0.07 3.86 6.43 -2.91 -0.02 3.84 16 25 C -0.03 -1.40 5.25 84.86 0.45 -0.96 16 26 N -0.95 -55.74 13.97 21.65 0.30 -55.43 16 27 Si 0.93 43.99 24.35 68.60 1.67 45.66 16 28 H -0.28 -12.37 6.42 99.48 0.64 -11.73 16 29 H -0.32 -15.95 7.11 99.48 0.71 -15.24 16 30 H -0.27 -12.19 6.91 99.48 0.69 -11.50 16 31 H 0.05 1.65 6.38 -2.39 -0.02 1.64 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.77 7.65 -2.39 -0.02 1.75 16 34 H 0.41 12.79 5.92 -92.71 -0.55 12.24 16 35 H 0.15 3.74 6.51 -2.91 -0.02 3.72 16 36 H 0.19 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 38 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.16 4.50 4.96 -2.92 -0.01 4.48 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 1.76 7.54 -2.38 -0.02 1.74 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 2.25 4.59 -2.39 -0.01 2.24 16 46 H 0.03 1.12 7.18 -2.39 -0.02 1.10 16 47 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -64.08 363.17 2.66 -61.42 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.37 Total: 29.51 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.46 Total: 0.51 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -4.78 Total: -118.41 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.05 Total: -18.69 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Total: -64.08 2.66 -61.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993574210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.924 kcal (2) G-P(sol) polarization free energy of solvation -64.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds