Wall clock time and date at job start Tue Mar 31 2020 22:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.69777 * 2 1 4 4 C 1.52759 * 109.51236 * 239.88070 * 2 1 3 5 5 H 1.08994 * 109.56437 * 65.66905 * 4 2 1 6 6 N 1.46499 * 109.38359 * 305.63382 * 4 2 1 7 7 C 1.34774 * 120.00038 * 155.14585 * 6 4 2 8 8 O 1.21548 * 119.99761 * 359.97438 * 7 6 4 9 9 C 1.47909 * 120.00103 * 179.97438 * 7 6 4 10 10 C 1.38883 * 121.11202 * 1.52810 * 9 7 6 11 11 C 1.39271 * 119.57944 * 180.02562 * 10 9 7 12 12 N 1.30993 * 121.88368 * 0.02600 * 11 10 9 13 13 C 1.33536 * 121.82803 * 359.97122 * 12 11 10 14 14 C 1.40716 * 120.97189 * 179.97438 * 13 12 11 15 15 C 1.36058 * 119.73963 * 180.02562 * 14 13 12 16 16 C 1.39350 * 121.05538 * 359.97438 * 15 14 13 17 17 C 1.36253 * 120.84021 * 0.02634 * 16 15 14 18 18 C 1.40104 * 119.64172 * 359.71859 * 17 16 15 19 19 C 1.53034 * 109.38257 * 185.70904 * 4 2 1 20 20 C 1.53041 * 109.54365 * 61.23611 * 19 4 2 21 21 C 1.53189 * 109.31432 * 298.63930 * 20 19 4 22 22 N 1.46931 * 108.77890 * 54.62871 * 21 20 19 23 23 C 1.36928 * 120.63307 * 126.36706 * 22 21 20 24 24 H 1.08000 * 120.00509 * 211.17961 * 23 22 21 25 25 C 1.38819 * 119.99838 * 31.18740 * 23 22 21 26 26 N 1.31616 * 119.99851 * 197.49024 * 25 23 22 27 27 Si 1.86801 * 120.00082 * 17.48566 * 25 23 22 28 28 H 1.48508 * 109.46897 * 272.86582 * 27 25 23 29 29 H 1.48502 * 109.47116 * 32.85929 * 27 25 23 30 30 H 1.48492 * 109.47117 * 152.86045 * 27 25 23 31 31 H 1.08998 * 109.47422 * 299.65130 * 1 2 3 32 32 H 1.09004 * 109.47029 * 59.65013 * 1 2 3 33 33 H 1.08996 * 109.47371 * 179.64411 * 1 2 3 34 34 H 0.97003 * 120.00010 * 335.13807 * 6 4 2 35 35 H 1.07997 * 120.21130 * 359.97438 * 10 9 7 36 36 H 1.08005 * 119.06112 * 179.97438 * 11 10 9 37 37 H 1.08000 * 120.12752 * 0.04420 * 14 13 12 38 38 H 1.07997 * 119.47081 * 179.97438 * 15 14 13 39 39 H 1.08004 * 119.58249 * 180.02562 * 16 15 14 40 40 H 1.07997 * 120.17592 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.46385 * 301.21745 * 19 4 2 42 42 H 1.08998 * 109.44989 * 181.25501 * 19 4 2 43 43 H 1.08992 * 109.50129 * 178.68013 * 20 19 4 44 44 H 1.09007 * 109.51872 * 58.60078 * 20 19 4 45 45 H 1.09003 * 109.58661 * 294.84453 * 21 20 19 46 46 H 1.09000 * 109.70928 * 174.48755 * 21 20 19 47 47 H 0.96999 * 119.99711 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2455 5 1 1.7633 -0.1566 -2.1349 6 7 1.4437 -2.0590 -1.3109 7 6 1.3202 -2.6844 -2.4983 8 8 1.7034 -2.1395 -3.5149 9 6 0.7185 -4.0340 -2.5643 10 6 0.2445 -4.6650 -1.4215 11 6 -0.3157 -5.9363 -1.5203 12 7 -0.4109 -6.5632 -2.6665 13 6 0.0235 -6.0182 -3.8056 14 6 -0.0873 -6.7081 -5.0270 15 6 0.3641 -6.1292 -6.1725 16 6 0.9366 -4.8588 -6.1587 17 6 1.0605 -4.1611 -4.9950 18 6 0.6015 -4.7244 -3.7971 19 6 3.5638 -0.8462 -1.1725 20 6 3.9523 -1.6686 0.0584 21 6 3.4644 -0.9518 1.3213 22 7 2.0224 -0.6995 1.1946 23 6 1.1535 -1.1134 2.1686 24 1 0.1448 -1.3972 1.9073 25 6 1.5691 -1.1680 3.4919 26 7 0.8845 -1.8722 4.3681 27 14 3.1000 -0.2422 4.0291 28 1 4.2959 -1.0962 3.8143 29 1 3.2313 1.0029 3.2306 30 1 2.9901 0.1026 5.4693 31 1 -0.3634 0.5084 0.8931 32 1 -0.3633 0.5193 -0.8869 33 1 -0.3634 -1.0276 -0.0064 34 1 1.1377 -2.4938 -0.4995 35 1 0.3106 -4.1734 -0.4622 36 1 -0.6813 -6.4194 -0.6262 37 1 -0.5292 -7.6932 -5.0549 38 1 0.2773 -6.6628 -7.1074 39 1 1.2867 -4.4217 -7.0822 40 1 1.5055 -3.1771 -4.9968 41 1 4.0058 0.1475 -1.0994 42 1 3.9312 -1.3418 -2.0711 43 1 5.0362 -1.7760 0.0968 44 1 3.4909 -2.6543 -0.0018 45 1 3.9927 -0.0048 1.4312 46 1 3.6505 -1.5775 2.1942 47 1 1.1752 -1.9107 5.2928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993574217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:34 Heat of formation + Delta-G solvation = 35.409145 kcal Electronic energy + Delta-G solvation = -30088.980496 eV Core-core repulsion = 26236.748180 eV Total energy + Delta-G solvation = -3852.232316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.19624 -40.95806 -39.28908 -38.08053 -35.74852 -34.65391 -34.14360 -33.49773 -31.98376 -31.51472 -30.71977 -28.08153 -26.71982 -26.14770 -24.60126 -24.37056 -23.57492 -22.50771 -21.79680 -20.51985 -19.26306 -18.68395 -18.48164 -18.16383 -17.31510 -16.90008 -16.60686 -16.42307 -15.98577 -15.77028 -15.50444 -15.45795 -15.23351 -14.89956 -14.78249 -14.76083 -14.30827 -14.26339 -14.04148 -13.81776 -13.40302 -13.19208 -12.78383 -12.74420 -12.61663 -12.53935 -12.33863 -12.25565 -12.14548 -11.94046 -11.65171 -11.55619 -11.41993 -11.34360 -11.19646 -10.59767 -10.32849 -10.07453 -9.81712 -9.27774 -8.82909 -8.08563 -5.44441 -0.96285 -0.23428 0.68403 1.33677 1.46227 1.52369 1.73713 2.04134 2.11450 2.47539 3.09069 3.11968 3.26865 3.29334 3.46584 3.62520 3.69169 3.85864 3.91479 3.97592 4.07511 4.18010 4.22563 4.24661 4.41937 4.48136 4.51077 4.54322 4.59643 4.61957 4.76891 4.82657 4.85381 4.92188 4.99713 5.06334 5.06930 5.10579 5.19487 5.26586 5.35120 5.35335 5.44365 5.49203 5.52329 5.64306 5.90097 5.96781 6.24743 6.47810 6.77793 6.96907 7.09728 7.68593 8.09670 9.09850 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.003426 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.450766 B = 8170.800640 C = 9001.215232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.160 3.840 3 H 0.057 0.943 4 C 0.139 3.861 5 H 0.093 0.907 6 N -0.688 5.688 7 C 0.560 3.440 8 O -0.557 6.557 9 C -0.089 4.089 10 C -0.130 4.130 11 C 0.124 3.876 12 N -0.473 5.473 13 C 0.099 3.901 14 C -0.108 4.108 15 C -0.091 4.091 16 C -0.112 4.112 17 C -0.125 4.125 18 C -0.083 4.083 19 C -0.117 4.117 20 C -0.124 4.124 21 C 0.119 3.881 22 N -0.611 5.611 23 C -0.234 4.234 24 H 0.074 0.926 25 C -0.026 4.026 26 N -0.954 5.954 27 Si 0.935 3.065 28 H -0.277 1.277 29 H -0.267 1.267 30 H -0.322 1.322 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.409 0.591 35 H 0.153 0.847 36 H 0.195 0.805 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.030 0.970 46 H 0.052 0.948 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 -5.227 -18.946 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 H 0.074 0.926 4 C 0.033 3.967 5 H 0.111 0.889 6 N -0.338 5.338 7 C 0.347 3.653 8 O -0.438 6.438 9 C -0.100 4.100 10 C -0.151 4.151 11 C -0.047 4.047 12 N -0.182 5.182 13 C -0.022 4.022 14 C -0.126 4.126 15 C -0.110 4.110 16 C -0.130 4.130 17 C -0.144 4.144 18 C -0.086 4.086 19 C -0.155 4.155 20 C -0.163 4.163 21 C -0.006 4.006 22 N -0.337 5.337 23 C -0.363 4.363 24 H 0.092 0.908 25 C -0.221 4.221 26 N -0.600 5.600 27 Si 0.766 3.234 28 H -0.204 1.204 29 H -0.192 1.192 30 H -0.251 1.251 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.247 0.753 35 H 0.170 0.830 36 H 0.211 0.789 37 H 0.169 0.831 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.935 -5.673 -19.621 20.446 hybrid contribution 0.870 1.073 1.752 2.231 sum 1.805 -4.600 -17.869 18.540 Atomic orbital electron populations 1.21734 0.94357 1.01593 1.01171 1.20845 0.94501 0.94216 0.84983 0.92575 1.21438 0.93204 0.82855 0.99213 0.88933 1.45952 1.60459 1.18666 1.08736 1.18159 0.78498 0.84909 0.83728 1.90528 1.51691 1.67228 1.34313 1.20447 1.00326 0.94838 0.94377 1.22704 0.96662 0.96837 0.98864 1.23398 0.93704 0.91159 0.96478 1.67865 1.15762 1.35879 0.98661 1.19292 0.97617 0.91402 0.93923 1.21088 1.00774 1.00940 0.89828 1.21374 0.95495 0.94958 0.99182 1.21461 0.97933 0.94858 0.98702 1.22070 0.98435 1.02327 0.91526 1.18876 1.00426 0.95167 0.94130 1.21759 0.94980 1.01225 0.97568 1.21842 1.00525 0.99025 0.94880 1.21433 0.84457 0.97334 0.97364 1.44580 1.02349 1.66227 1.20523 1.18843 0.96075 1.35609 0.85795 0.90805 1.25847 1.00080 0.99914 0.96275 1.69895 1.43128 1.43183 1.03803 0.86150 0.81443 0.80649 0.75183 1.20367 1.19179 1.25144 0.93272 0.91312 0.93227 0.75342 0.82977 0.78869 0.83079 0.81557 0.82787 0.82742 0.89998 0.92007 0.90806 0.92842 0.95217 0.92981 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.73 71.98 0.56 -3.67 16 2 C 0.16 5.32 3.18 44.83 0.14 5.46 16 3 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.14 4.07 2.32 44.92 0.10 4.17 16 5 H 0.09 2.63 7.58 -2.39 -0.02 2.62 16 6 N -0.69 -20.47 3.40 -445.68 -1.52 -21.98 16 7 C 0.56 17.16 7.73 86.81 0.67 17.83 16 8 O -0.56 -18.63 13.16 -3.87 -0.05 -18.68 16 9 C -0.09 -2.58 5.94 -19.68 -0.12 -2.70 16 10 C -0.13 -3.36 9.61 22.67 0.22 -3.15 16 11 C 0.12 3.00 11.14 85.07 0.95 3.94 16 12 N -0.47 -12.75 10.30 -188.72 -1.94 -14.69 16 13 C 0.10 2.68 6.61 40.35 0.27 2.95 16 14 C -0.11 -2.24 9.98 22.37 0.22 -2.02 16 15 C -0.09 -1.49 9.94 22.03 0.22 -1.27 16 16 C -0.11 -2.14 9.96 22.07 0.22 -1.92 16 17 C -0.13 -3.29 9.25 22.26 0.21 -3.09 16 18 C -0.08 -2.40 5.76 -21.09 -0.12 -2.52 16 19 C -0.12 -3.27 5.58 30.62 0.17 -3.10 16 20 C -0.12 -3.84 5.93 30.67 0.18 -3.66 16 21 C 0.12 4.53 4.20 86.36 0.36 4.89 16 22 N -0.61 -24.67 2.39 -676.01 -1.62 -26.29 16 23 C -0.23 -11.44 8.99 84.04 0.76 -10.69 16 24 H 0.07 3.84 6.46 -2.91 -0.02 3.82 16 25 C -0.03 -1.40 5.26 84.86 0.45 -0.95 16 26 N -0.95 -55.79 13.97 21.65 0.30 -55.49 16 27 Si 0.93 44.03 24.34 68.60 1.67 45.70 16 28 H -0.28 -12.40 6.44 99.48 0.64 -11.76 16 29 H -0.27 -12.14 6.88 99.48 0.68 -11.46 16 30 H -0.32 -15.94 7.11 99.48 0.71 -15.23 16 31 H 0.05 1.77 7.64 -2.39 -0.02 1.75 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.05 1.66 6.36 -2.39 -0.02 1.64 16 34 H 0.41 12.78 5.89 -92.71 -0.55 12.23 16 35 H 0.15 3.73 6.51 -2.91 -0.02 3.71 16 36 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 38 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.16 4.50 4.96 -2.92 -0.01 4.48 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.05 1.76 7.53 -2.38 -0.02 1.74 16 45 H 0.03 1.12 7.14 -2.39 -0.02 1.10 16 46 H 0.05 2.24 4.63 -2.39 -0.01 2.23 16 47 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -64.12 363.04 2.67 -61.45 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.37 Total: 29.48 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.45 Total: 0.51 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -4.77 Total: -118.45 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.05 Total: -18.68 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.67 Total: 45.70 kcal Total: -64.12 2.67 -61.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993574217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.855 kcal (2) G-P(sol) polarization free energy of solvation -64.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds