Wall clock time and date at job start Tue Mar 31 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.58289 * 2 1 4 4 C 1.53194 * 109.58610 * 120.28759 * 2 1 3 5 5 H 1.08997 * 109.49622 * 54.43325 * 4 2 1 6 6 N 1.46499 * 109.49462 * 294.37078 * 4 2 1 7 7 C 1.34783 * 119.99642 * 155.06336 * 6 4 2 8 8 O 1.21540 * 120.00291 * 0.02562 * 7 6 4 9 9 C 1.47908 * 119.99464 * 179.97438 * 7 6 4 10 10 C 1.38890 * 121.11728 * 354.15277 * 9 7 6 11 11 C 1.39262 * 119.58036 * 180.22179 * 10 9 7 12 12 N 1.30996 * 121.88744 * 0.08007 * 11 10 9 13 13 C 1.33546 * 121.82437 * 359.94076 * 12 11 10 14 14 C 1.40710 * 120.96394 * 179.97438 * 13 12 11 15 15 C 1.36060 * 119.73495 * 180.02562 * 14 13 12 16 16 C 1.39349 * 121.05674 * 0.04329 * 15 14 13 17 17 C 1.36248 * 120.84255 * 359.97438 * 16 15 14 18 18 C 1.40103 * 119.63739 * 359.97438 * 17 16 15 19 19 C 1.53038 * 109.33661 * 174.40836 * 4 2 1 20 20 C 1.53045 * 109.53707 * 298.67926 * 19 4 2 21 21 C 1.53186 * 109.33533 * 61.31830 * 20 19 4 22 22 N 1.46918 * 108.78167 * 305.37720 * 21 20 19 23 23 C 1.36932 * 120.63427 * 233.63626 * 22 21 20 24 24 H 1.08006 * 120.00310 * 149.31183 * 23 22 21 25 25 C 1.38811 * 120.00110 * 329.30146 * 23 22 21 26 26 N 1.31616 * 120.00274 * 161.80102 * 25 23 22 27 27 Si 1.86807 * 119.99693 * 341.81060 * 25 23 22 28 28 H 1.48500 * 109.47391 * 89.95630 * 27 25 23 29 29 H 1.48508 * 109.46787 * 209.95393 * 27 25 23 30 30 H 1.48495 * 109.47037 * 329.95104 * 27 25 23 31 31 H 1.09004 * 109.47096 * 299.71338 * 1 2 3 32 32 H 1.09001 * 109.47496 * 59.71530 * 1 2 3 33 33 H 1.08999 * 109.47131 * 179.71460 * 1 2 3 34 34 H 0.96996 * 120.00264 * 335.07291 * 6 4 2 35 35 H 1.07993 * 120.20797 * 0.25566 * 10 9 7 36 36 H 1.08003 * 119.05711 * 180.02562 * 11 10 9 37 37 H 1.07995 * 120.13768 * 0.02562 * 14 13 12 38 38 H 1.08007 * 119.47027 * 180.02562 * 15 14 13 39 39 H 1.07998 * 119.58216 * 179.97438 * 16 15 14 40 40 H 1.07992 * 120.18269 * 179.97438 * 17 16 15 41 41 H 1.08998 * 109.46449 * 58.66753 * 19 4 2 42 42 H 1.08997 * 109.45637 * 178.62814 * 19 4 2 43 43 H 1.09005 * 109.47059 * 301.36599 * 20 19 4 44 44 H 1.09005 * 109.51904 * 181.30461 * 20 19 4 45 45 H 1.09011 * 109.58349 * 185.59047 * 21 20 19 46 46 H 1.09006 * 109.58610 * 65.17317 * 21 20 19 47 47 H 0.97001 * 119.99807 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.6025 -1.7235 1.2937 6 7 1.6706 0.0297 2.4434 7 6 1.5485 -0.6003 3.6287 8 8 1.7482 -1.7968 3.7044 9 6 1.1724 0.1647 4.8374 10 6 1.0572 1.5484 4.8041 11 6 0.7057 2.2371 5.9624 12 7 0.4793 1.6174 7.0941 13 6 0.5718 0.2894 7.2006 14 6 0.3252 -0.3575 8.4256 15 6 0.4271 -1.7119 8.5059 16 6 0.7738 -2.4741 7.3921 17 6 1.0201 -1.8822 6.1898 18 6 0.9234 -0.4897 6.0705 19 6 3.5675 -0.8472 1.1716 20 6 3.9569 -1.6658 -0.0615 21 6 3.4650 -0.9485 -1.3225 22 7 2.0225 -0.7010 -1.1937 23 6 1.1536 -1.1162 -2.1672 24 1 0.1437 -1.3961 -1.9060 25 6 1.5707 -1.1770 -3.4897 26 7 0.8932 -1.8939 -4.3612 27 14 3.0939 -0.2417 -4.0327 28 1 4.2895 -1.1081 -3.8746 29 1 2.9519 0.1507 -5.4580 30 1 3.2509 0.9760 -3.1974 31 1 -0.3633 0.5094 0.8926 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3633 -1.0276 -0.0051 34 1 1.5114 0.9846 2.3831 35 1 1.2384 2.0868 3.8857 36 1 0.6180 3.3129 5.9268 37 1 0.0561 0.2186 9.2985 38 1 0.2365 -2.2042 9.4482 39 1 0.8483 -3.5477 7.4829 40 1 1.2884 -2.4832 5.3336 41 1 4.0066 0.1478 1.0998 42 1 3.9373 -1.3432 2.0689 43 1 3.4983 -2.6529 -0.0020 44 1 5.0412 -1.7702 -0.1018 45 1 3.6518 -1.5744 -2.1953 46 1 3.9903 0.0003 -1.4317 47 1 1.1849 -1.9366 -5.2853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993574219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:39 Heat of formation + Delta-G solvation = 51.132639 kcal Electronic energy + Delta-G solvation = -29359.800079 eV Core-core repulsion = 25508.249585 eV Total energy + Delta-G solvation = -3851.550494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.33433 -39.73030 -37.98009 -37.34119 -34.67876 -33.70713 -32.80582 -31.82810 -30.82483 -30.55812 -29.64259 -26.63299 -25.37156 -24.84628 -23.82747 -23.27814 -22.13969 -21.02404 -20.62382 -19.74457 -18.37378 -17.76699 -17.54264 -16.57763 -15.99368 -15.75423 -15.34574 -15.21784 -14.99181 -14.66512 -14.45149 -14.37602 -14.13697 -13.72691 -13.58587 -13.46185 -13.32642 -13.24484 -12.49446 -12.05721 -12.04278 -11.91188 -11.85170 -11.62034 -11.42081 -11.37021 -10.96874 -10.77551 -10.71451 -10.53131 -10.44135 -10.39289 -10.04611 -9.66455 -9.52848 -9.41344 -9.07383 -8.98651 -8.66460 -8.48440 -7.01879 -5.99118 -3.40512 -0.15013 0.52083 1.50369 2.56025 2.95636 3.00355 3.28254 3.44106 3.46414 3.89141 3.96184 4.28918 4.36325 4.46293 4.48306 4.59023 4.81501 4.86494 4.94927 5.07503 5.11945 5.26098 5.26842 5.33683 5.39120 5.46435 5.51305 5.63758 5.75332 5.78636 5.87583 5.94058 6.06759 6.10535 6.14635 6.21903 6.26106 6.26966 6.36122 6.39037 6.43016 6.49637 6.64124 6.65525 6.72720 6.88898 6.96465 7.42821 7.56248 7.91521 8.10568 8.30370 8.87272 9.66189 10.02191 11.16151 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.002656 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.133502 B =10538.107768 C =10836.872703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.171 3.829 3 H 0.033 0.967 4 C 0.129 3.871 5 H 0.094 0.906 6 N -0.706 5.706 7 C 0.558 3.442 8 O -0.525 6.525 9 C -0.065 4.065 10 C -0.141 4.141 11 C 0.126 3.874 12 N -0.461 5.461 13 C 0.123 3.877 14 C -0.101 4.101 15 C -0.097 4.097 16 C -0.120 4.120 17 C -0.098 4.098 18 C -0.067 4.067 19 C -0.119 4.119 20 C -0.132 4.132 21 C 0.122 3.878 22 N -0.596 5.596 23 C -0.263 4.263 24 H 0.091 0.909 25 C 0.028 3.972 26 N -0.907 5.907 27 Si 0.884 3.116 28 H -0.287 1.287 29 H -0.304 1.304 30 H -0.272 1.272 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.397 0.603 35 H 0.143 0.857 36 H 0.166 0.834 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.171 0.829 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.026 0.974 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 6.178 22.696 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.050 0.950 4 C 0.023 3.977 5 H 0.112 0.888 6 N -0.356 5.356 7 C 0.344 3.656 8 O -0.403 6.403 9 C -0.076 4.076 10 C -0.162 4.162 11 C -0.046 4.046 12 N -0.169 5.169 13 C 0.002 3.998 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.138 4.138 17 C -0.116 4.116 18 C -0.069 4.069 19 C -0.157 4.157 20 C -0.171 4.171 21 C -0.003 4.003 22 N -0.321 5.321 23 C -0.391 4.391 24 H 0.109 0.891 25 C -0.172 4.172 26 N -0.550 5.550 27 Si 0.715 3.285 28 H -0.215 1.215 29 H -0.232 1.232 30 H -0.197 1.197 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.161 0.839 36 H 0.183 0.817 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.187 0.813 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.043 0.957 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.148 5.650 23.314 24.016 hybrid contribution 1.087 0.621 -1.204 1.737 sum 2.236 6.271 22.110 23.091 Atomic orbital electron populations 1.21837 0.94766 1.02409 1.00496 1.20576 0.94000 0.93322 0.85756 0.94952 1.21868 0.95157 0.97251 0.83386 0.88776 1.46039 1.69092 1.12354 1.08101 1.18020 0.77683 0.87007 0.82885 1.90598 1.50499 1.14440 1.84754 1.20471 0.99305 0.93921 0.93892 1.22452 0.99385 0.93675 1.00712 1.22902 0.93729 1.00714 0.87271 1.67806 1.12602 1.09391 1.27149 1.18892 0.98431 0.89009 0.93496 1.20766 1.00815 0.94425 0.95987 1.21006 0.97890 0.93716 0.99064 1.21126 0.99332 1.00613 0.92771 1.22120 0.95867 0.93621 0.99986 1.18696 1.00456 0.95267 0.92524 1.21780 0.95318 1.00191 0.98454 1.21995 0.99635 1.00046 0.95470 1.21437 0.85001 0.97179 0.96703 1.44327 1.02177 1.65667 1.19884 1.18884 0.96424 1.38457 0.85345 0.89121 1.25332 0.97622 0.98488 0.95716 1.69804 1.41212 1.40013 1.03957 0.86944 0.83317 0.81418 0.76839 1.21471 1.23194 1.19672 0.94158 0.91318 0.92138 0.76754 0.83894 0.81708 0.84667 0.85270 0.85318 0.81253 0.92513 0.92437 0.91418 0.92417 0.90625 0.95660 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.85 37.16 0.29 -2.08 16 2 C 0.17 3.06 3.03 -67.59 -0.21 2.86 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.13 2.06 1.99 -67.81 -0.14 1.92 16 5 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 6 N -0.71 -8.98 4.53 -54.61 -0.25 -9.23 16 7 C 0.56 7.72 7.72 -12.30 -0.09 7.63 16 8 O -0.53 -8.77 13.19 5.33 0.07 -8.70 16 9 C -0.06 -0.78 5.94 -104.34 -0.62 -1.40 16 10 C -0.14 -1.28 9.60 -38.96 -0.37 -1.65 16 11 C 0.13 1.12 11.14 -17.53 -0.20 0.93 16 12 N -0.46 -5.25 10.30 -11.01 -0.11 -5.37 16 13 C 0.12 1.49 6.61 -84.87 -0.56 0.93 16 14 C -0.10 -1.01 9.98 -39.43 -0.39 -1.41 16 15 C -0.10 -0.85 9.94 -39.95 -0.40 -1.24 16 16 C -0.12 -1.20 9.96 -39.88 -0.40 -1.59 16 17 C -0.10 -1.22 9.25 -39.60 -0.37 -1.59 16 18 C -0.07 -0.85 5.76 -106.52 -0.61 -1.47 16 19 C -0.12 -1.86 5.46 -26.69 -0.15 -2.00 16 20 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 21 C 0.12 2.54 4.20 -3.72 -0.02 2.52 16 22 N -0.60 -13.29 2.73 -164.77 -0.45 -13.74 16 23 C -0.26 -6.94 9.01 -15.06 -0.14 -7.08 16 24 H 0.09 2.55 6.44 -52.48 -0.34 2.21 16 25 C 0.03 0.77 5.25 -17.43 -0.09 0.68 16 26 N -0.91 -27.09 13.97 55.49 0.78 -26.32 16 27 Si 0.88 21.70 24.34 -169.99 -4.14 17.56 16 28 H -0.29 -6.82 6.56 56.52 0.37 -6.45 16 29 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 30 H -0.27 -6.51 6.76 56.52 0.38 -6.13 16 31 H 0.04 0.56 7.79 -51.93 -0.40 0.15 16 32 H 0.07 1.28 7.68 -51.93 -0.40 0.89 16 33 H 0.06 1.15 7.39 -51.93 -0.38 0.77 16 34 H 0.40 3.91 6.78 -40.82 -0.28 3.63 16 35 H 0.14 0.85 6.55 -52.49 -0.34 0.51 16 36 H 0.17 0.88 8.06 -52.48 -0.42 0.45 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.17 2.37 4.98 -52.49 -0.26 2.11 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 1.74 4.70 -51.92 -0.24 1.49 16 46 H 0.03 0.52 7.07 -51.93 -0.37 0.15 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -32.23 366.45 -9.59 -41.83 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.40 Total: 4.93 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -4.61 Total: -6.50 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.04 Total: -54.65 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.14 Total: 17.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.23 -9.59 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993574219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.958 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds