Wall clock time and date at job start Tue Mar 31 2020 22:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.58289 * 2 1 4 4 C 1.53194 * 109.58610 * 120.28759 * 2 1 3 5 5 H 1.08997 * 109.49622 * 54.43325 * 4 2 1 6 6 N 1.46499 * 109.49462 * 294.37078 * 4 2 1 7 7 C 1.34783 * 119.99642 * 155.06336 * 6 4 2 8 8 O 1.21540 * 120.00291 * 0.02562 * 7 6 4 9 9 C 1.47908 * 119.99464 * 179.97438 * 7 6 4 10 10 C 1.38890 * 121.11728 * 354.15277 * 9 7 6 11 11 C 1.39262 * 119.58036 * 180.22179 * 10 9 7 12 12 N 1.30996 * 121.88744 * 0.08007 * 11 10 9 13 13 C 1.33546 * 121.82437 * 359.94076 * 12 11 10 14 14 C 1.40710 * 120.96394 * 179.97438 * 13 12 11 15 15 C 1.36060 * 119.73495 * 180.02562 * 14 13 12 16 16 C 1.39349 * 121.05674 * 0.04329 * 15 14 13 17 17 C 1.36248 * 120.84255 * 359.97438 * 16 15 14 18 18 C 1.40103 * 119.63739 * 359.97438 * 17 16 15 19 19 C 1.53038 * 109.33661 * 174.40836 * 4 2 1 20 20 C 1.53045 * 109.53707 * 298.67926 * 19 4 2 21 21 C 1.53186 * 109.33533 * 61.31830 * 20 19 4 22 22 N 1.46918 * 108.78167 * 305.37720 * 21 20 19 23 23 C 1.36932 * 120.63427 * 233.63626 * 22 21 20 24 24 H 1.08006 * 120.00310 * 149.31183 * 23 22 21 25 25 C 1.38811 * 120.00110 * 329.30146 * 23 22 21 26 26 N 1.31616 * 120.00274 * 161.80102 * 25 23 22 27 27 Si 1.86807 * 119.99693 * 341.81060 * 25 23 22 28 28 H 1.48500 * 109.47391 * 89.95630 * 27 25 23 29 29 H 1.48508 * 109.46787 * 209.95393 * 27 25 23 30 30 H 1.48495 * 109.47037 * 329.95104 * 27 25 23 31 31 H 1.09004 * 109.47096 * 299.71338 * 1 2 3 32 32 H 1.09001 * 109.47496 * 59.71530 * 1 2 3 33 33 H 1.08999 * 109.47131 * 179.71460 * 1 2 3 34 34 H 0.96996 * 120.00264 * 335.07291 * 6 4 2 35 35 H 1.07993 * 120.20797 * 0.25566 * 10 9 7 36 36 H 1.08003 * 119.05711 * 180.02562 * 11 10 9 37 37 H 1.07995 * 120.13768 * 0.02562 * 14 13 12 38 38 H 1.08007 * 119.47027 * 180.02562 * 15 14 13 39 39 H 1.07998 * 119.58216 * 179.97438 * 16 15 14 40 40 H 1.07992 * 120.18269 * 179.97438 * 17 16 15 41 41 H 1.08998 * 109.46449 * 58.66753 * 19 4 2 42 42 H 1.08997 * 109.45637 * 178.62814 * 19 4 2 43 43 H 1.09005 * 109.47059 * 301.36599 * 20 19 4 44 44 H 1.09005 * 109.51904 * 181.30461 * 20 19 4 45 45 H 1.09011 * 109.58349 * 185.59047 * 21 20 19 46 46 H 1.09006 * 109.58610 * 65.17317 * 21 20 19 47 47 H 0.97001 * 119.99807 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.6025 -1.7235 1.2937 6 7 1.6706 0.0297 2.4434 7 6 1.5485 -0.6003 3.6287 8 8 1.7482 -1.7968 3.7044 9 6 1.1724 0.1647 4.8374 10 6 1.0572 1.5484 4.8041 11 6 0.7057 2.2371 5.9624 12 7 0.4793 1.6174 7.0941 13 6 0.5718 0.2894 7.2006 14 6 0.3252 -0.3575 8.4256 15 6 0.4271 -1.7119 8.5059 16 6 0.7738 -2.4741 7.3921 17 6 1.0201 -1.8822 6.1898 18 6 0.9234 -0.4897 6.0705 19 6 3.5675 -0.8472 1.1716 20 6 3.9569 -1.6658 -0.0615 21 6 3.4650 -0.9485 -1.3225 22 7 2.0225 -0.7010 -1.1937 23 6 1.1536 -1.1162 -2.1672 24 1 0.1437 -1.3961 -1.9060 25 6 1.5707 -1.1770 -3.4897 26 7 0.8932 -1.8939 -4.3612 27 14 3.0939 -0.2417 -4.0327 28 1 4.2895 -1.1081 -3.8746 29 1 2.9519 0.1507 -5.4580 30 1 3.2509 0.9760 -3.1974 31 1 -0.3633 0.5094 0.8926 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3633 -1.0276 -0.0051 34 1 1.5114 0.9846 2.3831 35 1 1.2384 2.0868 3.8857 36 1 0.6180 3.3129 5.9268 37 1 0.0561 0.2186 9.2985 38 1 0.2365 -2.2042 9.4482 39 1 0.8483 -3.5477 7.4829 40 1 1.2884 -2.4832 5.3336 41 1 4.0066 0.1478 1.0998 42 1 3.9373 -1.3432 2.0689 43 1 3.4983 -2.6529 -0.0020 44 1 5.0412 -1.7702 -0.1018 45 1 3.6518 -1.5744 -2.1953 46 1 3.9903 0.0003 -1.4317 47 1 1.1849 -1.9366 -5.2853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993574219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:38 Heat of formation + Delta-G solvation = 30.226611 kcal Electronic energy + Delta-G solvation = -29360.706633 eV Core-core repulsion = 25508.249585 eV Total energy + Delta-G solvation = -3852.457047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.18658 -40.86322 -39.37748 -38.08707 -36.07862 -34.70999 -34.27596 -33.52047 -31.92464 -31.51303 -30.71833 -28.08664 -26.79943 -26.15258 -24.60544 -24.40523 -23.33616 -22.44142 -21.77966 -21.21095 -19.23734 -18.66142 -18.43612 -18.31530 -17.43127 -16.93531 -16.58673 -16.30528 -16.10669 -15.85467 -15.56569 -15.37171 -15.28783 -15.02737 -14.87486 -14.76868 -14.40706 -14.23583 -14.06677 -13.65682 -13.50758 -12.96054 -12.92350 -12.79270 -12.64940 -12.54897 -12.46548 -12.32379 -12.06461 -11.93076 -11.67152 -11.55627 -11.50994 -11.36418 -11.27558 -10.70601 -10.34299 -10.16197 -9.80860 -9.29554 -8.88581 -8.12317 -5.49386 -0.95219 -0.22138 0.66742 1.33718 1.43639 1.52872 1.73439 1.88043 2.09652 2.45374 3.07403 3.09422 3.25645 3.30706 3.47431 3.63680 3.69134 3.82131 3.86950 3.92047 4.05638 4.17105 4.20694 4.24246 4.35477 4.42063 4.49673 4.55030 4.58094 4.64217 4.69749 4.77798 4.86154 4.89214 5.00087 5.02132 5.04573 5.07267 5.15079 5.22981 5.31853 5.34626 5.42348 5.48786 5.53617 5.58696 5.88111 5.92058 6.20492 6.41957 6.81087 6.92869 7.09580 7.64279 8.03365 9.06976 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.002656 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.133502 B =10538.107768 C =10836.872703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.168 3.832 3 H 0.062 0.938 4 C 0.144 3.856 5 H 0.058 0.942 6 N -0.693 5.693 7 C 0.559 3.441 8 O -0.561 6.561 9 C -0.091 4.091 10 C -0.119 4.119 11 C 0.126 3.874 12 N -0.476 5.476 13 C 0.101 3.899 14 C -0.106 4.106 15 C -0.094 4.094 16 C -0.115 4.115 17 C -0.130 4.130 18 C -0.087 4.087 19 C -0.111 4.111 20 C -0.125 4.125 21 C 0.116 3.884 22 N -0.612 5.612 23 C -0.242 4.242 24 H 0.059 0.941 25 C -0.035 4.035 26 N -0.961 5.961 27 Si 0.947 3.053 28 H -0.276 1.276 29 H -0.316 1.316 30 H -0.254 1.254 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.030 0.970 34 H 0.415 0.585 35 H 0.179 0.821 36 H 0.206 0.794 37 H 0.153 0.847 38 H 0.164 0.836 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 9.182 25.431 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.062 3.938 3 H 0.079 0.921 4 C 0.037 3.963 5 H 0.076 0.924 6 N -0.344 5.344 7 C 0.347 3.653 8 O -0.441 6.441 9 C -0.102 4.102 10 C -0.140 4.140 11 C -0.046 4.046 12 N -0.184 5.184 13 C -0.019 4.019 14 C -0.125 4.125 15 C -0.113 4.113 16 C -0.133 4.133 17 C -0.148 4.148 18 C -0.089 4.089 19 C -0.150 4.150 20 C -0.165 4.165 21 C -0.009 4.009 22 N -0.337 5.337 23 C -0.371 4.371 24 H 0.077 0.923 25 C -0.229 4.229 26 N -0.607 5.607 27 Si 0.776 3.224 28 H -0.203 1.203 29 H -0.245 1.245 30 H -0.178 1.178 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.254 0.746 35 H 0.196 0.804 36 H 0.223 0.777 37 H 0.171 0.829 38 H 0.181 0.819 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.515 8.694 26.113 27.637 hybrid contribution 0.576 -0.324 -1.906 2.018 sum 3.092 8.370 24.207 25.799 Atomic orbital electron populations 1.21761 0.94708 1.00819 1.01523 1.20792 0.94163 0.94274 0.84587 0.92086 1.21390 0.95445 0.95651 0.83788 0.92352 1.45737 1.68975 1.12960 1.06754 1.18326 0.76823 0.86673 0.83479 1.90602 1.51933 1.16211 1.85340 1.20348 1.01880 0.95153 0.92814 1.22862 0.96579 0.92325 1.02209 1.23618 0.92139 1.02466 0.86372 1.67867 1.13067 1.09052 1.28443 1.19174 0.99307 0.89510 0.93959 1.21100 1.00256 0.95127 0.95974 1.21342 0.96734 0.93404 0.99868 1.21419 0.97803 1.01770 0.92332 1.22018 0.98459 0.93941 1.00419 1.18883 1.01187 0.95492 0.93374 1.21721 0.94684 1.01122 0.97468 1.21903 1.01106 0.98799 0.94690 1.21506 0.84197 0.97789 0.97358 1.44460 1.02494 1.66531 1.20212 1.18796 0.95782 1.36262 0.86283 0.92302 1.25966 1.01115 0.99848 0.95984 1.69952 1.43956 1.42581 1.04201 0.85920 0.80243 0.80613 0.75654 1.20277 1.24535 1.17844 0.90232 0.93102 0.95065 0.74638 0.80363 0.77706 0.82915 0.81859 0.83509 0.83550 0.90086 0.92189 0.93537 0.89642 0.93205 0.93931 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 7.85 71.98 0.56 -3.88 16 2 C 0.17 5.73 3.03 44.98 0.14 5.87 16 3 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.14 4.40 1.99 45.07 0.09 4.49 16 5 H 0.06 2.24 7.58 -2.39 -0.02 2.23 16 6 N -0.69 -16.05 4.53 -444.98 -2.02 -18.06 16 7 C 0.56 15.06 7.72 86.80 0.67 15.73 16 8 O -0.56 -19.31 13.19 -3.84 -0.05 -19.36 16 9 C -0.09 -2.06 5.94 -19.68 -0.12 -2.18 16 10 C -0.12 -1.74 9.60 22.67 0.22 -1.52 16 11 C 0.13 1.78 11.14 85.06 0.95 2.73 16 12 N -0.48 -9.69 10.30 -188.73 -1.94 -11.63 16 13 C 0.10 2.31 6.61 40.34 0.27 2.58 16 14 C -0.11 -1.94 9.98 22.37 0.22 -1.71 16 15 C -0.09 -1.47 9.94 22.03 0.22 -1.25 16 16 C -0.12 -2.23 9.96 22.07 0.22 -2.01 16 17 C -0.13 -3.35 9.25 22.26 0.21 -3.14 16 18 C -0.09 -2.19 5.76 -21.09 -0.12 -2.31 16 19 C -0.11 -3.21 5.46 30.62 0.17 -3.04 16 20 C -0.13 -4.15 6.08 30.67 0.19 -3.96 16 21 C 0.12 4.64 4.20 86.36 0.36 5.00 16 22 N -0.61 -26.95 2.73 -675.22 -1.84 -28.79 16 23 C -0.24 -13.10 9.01 84.03 0.76 -12.35 16 24 H 0.06 3.50 6.44 -2.91 -0.02 3.48 16 25 C -0.03 -1.98 5.25 84.86 0.45 -1.53 16 26 N -0.96 -59.81 13.97 21.65 0.30 -59.51 16 27 Si 0.95 45.12 24.34 68.60 1.67 46.79 16 28 H -0.28 -12.51 6.56 99.48 0.65 -11.86 16 29 H -0.32 -15.58 7.11 99.48 0.71 -14.87 16 30 H -0.25 -11.26 6.76 99.48 0.67 -10.58 16 31 H 0.08 2.03 7.79 -2.39 -0.02 2.01 16 32 H 0.05 1.90 7.68 -2.39 -0.02 1.88 16 33 H 0.03 1.22 7.39 -2.39 -0.02 1.20 16 34 H 0.42 6.47 6.78 -92.71 -0.63 5.84 16 35 H 0.18 1.18 6.55 -2.91 -0.02 1.16 16 36 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.15 4.42 4.98 -2.92 -0.01 4.41 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.05 2.25 4.70 -2.38 -0.01 2.24 16 46 H 0.04 1.58 7.07 -2.38 -0.02 1.56 16 47 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -75.33 366.45 1.85 -73.48 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.29 Total: 19.57 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.44 Total: -2.49 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -5.50 Total: -118.00 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.79 kcal Total: -75.33 1.85 -73.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993574219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.711 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds