Wall clock time and date at job start Tue Mar 31 2020 22:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.58896 * 2 1 4 4 C 1.53193 * 109.58890 * 239.70936 * 2 1 3 5 5 H 1.08998 * 109.49705 * 305.56945 * 4 2 1 6 6 N 1.46503 * 109.49513 * 65.62884 * 4 2 1 7 7 C 1.34772 * 120.00111 * 205.00407 * 6 4 2 8 8 O 1.21592 * 120.00038 * 359.97438 * 7 6 4 9 9 C 1.47555 * 120.00295 * 180.02562 * 7 6 4 10 10 C 1.38692 * 120.38260 * 354.15926 * 9 7 6 11 11 C 1.38976 * 120.53349 * 180.27804 * 10 9 7 12 12 C 1.36212 * 121.23609 * 359.44021 * 11 10 9 13 13 C 1.40712 * 120.20130 * 0.27776 * 12 11 10 14 14 N 1.33692 * 120.95031 * 180.02562 * 13 12 11 15 15 C 1.31065 * 121.34179 * 179.97438 * 14 13 12 16 16 C 1.39341 * 121.71010 * 359.97438 * 15 14 13 17 17 C 1.36669 * 119.86803 * 0.02562 * 16 15 14 18 18 C 1.40477 * 118.16926 * 359.97438 * 17 16 15 19 19 C 1.53037 * 109.31245 * 185.57884 * 4 2 1 20 20 C 1.53039 * 109.53502 * 61.37061 * 19 4 2 21 21 C 1.53191 * 109.31336 * 298.63012 * 20 19 4 22 22 N 1.46927 * 108.77383 * 54.63774 * 21 20 19 23 23 C 1.36939 * 120.63053 * 126.41497 * 22 21 20 24 24 H 1.07996 * 120.00095 * 220.64557 * 23 22 21 25 25 C 1.38813 * 119.99583 * 40.64365 * 23 22 21 26 26 N 1.31624 * 119.99439 * 214.90783 * 25 23 22 27 27 Si 1.86792 * 120.00392 * 34.91575 * 25 23 22 28 28 H 1.48503 * 109.47391 * 84.82957 * 27 25 23 29 29 H 1.48500 * 109.47265 * 204.82938 * 27 25 23 30 30 H 1.48499 * 109.47271 * 324.83003 * 27 25 23 31 31 H 1.08996 * 109.46916 * 180.28715 * 1 2 3 32 32 H 1.08994 * 109.47243 * 300.28915 * 1 2 3 33 33 H 1.09001 * 109.46637 * 60.28660 * 1 2 3 34 34 H 0.97006 * 119.99705 * 24.99873 * 6 4 2 35 35 H 1.08003 * 119.73772 * 0.02562 * 10 9 7 36 36 H 1.07999 * 119.38085 * 179.72100 * 11 10 9 37 37 H 1.08001 * 119.89937 * 180.29787 * 12 11 10 38 38 H 1.07998 * 119.14357 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.06774 * 179.97438 * 16 15 14 40 40 H 1.08004 * 120.92128 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.45847 * 181.38465 * 19 4 2 42 42 H 1.08994 * 109.46268 * 301.34440 * 19 4 2 43 43 H 1.09004 * 109.49380 * 178.68418 * 20 19 4 44 44 H 1.08997 * 109.52744 * 58.59946 * 20 19 4 45 45 H 1.09003 * 109.58813 * 294.85465 * 21 20 19 46 46 H 1.09002 * 109.58666 * 174.42800 * 21 20 19 47 47 H 0.97006 * 119.99494 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7280 -1.2462 5 1 1.6025 -1.7236 -1.2937 6 7 1.6707 0.0296 -2.4434 7 6 1.5473 -0.6006 -3.6284 8 8 1.7460 -1.7978 -3.7039 9 6 1.1722 0.1624 -4.8343 10 6 0.8273 1.5023 -4.7376 11 6 0.4680 2.2225 -5.8706 12 6 0.4548 1.6411 -7.1023 13 6 0.8029 0.2857 -7.2491 14 7 0.7956 -0.2998 -8.4509 15 6 1.1189 -1.5616 -8.5965 16 6 1.4859 -2.3537 -7.5105 17 6 1.5137 -1.8158 -6.2544 18 6 1.1662 -0.4630 -6.1044 19 6 3.5676 -0.8466 -1.1710 20 6 3.9568 -1.6659 0.0616 21 6 3.4650 -0.9486 1.3227 22 7 2.0225 -0.7010 1.1937 23 6 1.1536 -1.1153 2.1677 24 1 0.2018 -1.5464 1.8945 25 6 1.4962 -0.9811 3.5061 26 7 1.1121 -1.8893 4.3780 27 14 2.5023 0.4883 4.0700 28 1 1.5979 1.6372 4.3298 29 1 3.2310 0.1404 5.3162 30 1 3.4777 0.8556 3.0123 31 1 -0.3633 -1.0276 0.0052 32 1 -0.3633 0.5183 0.8873 33 1 -0.3632 0.5094 -0.8926 34 1 1.5125 0.9847 -2.3833 35 1 0.8342 1.9890 -3.7734 36 1 0.1984 3.2638 -5.7731 37 1 0.1766 2.2224 -7.9690 38 1 1.1005 -1.9987 -9.5839 39 1 1.7469 -3.3908 -7.6608 40 1 1.7960 -2.4140 -5.4006 41 1 3.9379 -1.3425 -2.0683 42 1 4.0062 0.1485 -1.0991 43 1 5.0412 -1.7698 0.1017 44 1 3.4987 -2.6531 0.0025 45 1 3.9902 0.0003 1.4318 46 1 3.6517 -1.5745 2.1954 47 1 1.3512 -1.7953 5.3134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993641985.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:32 Heat of formation + Delta-G solvation = 49.006529 kcal Electronic energy + Delta-G solvation = -29352.046223 eV Core-core repulsion = 25500.403534 eV Total energy + Delta-G solvation = -3851.642689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.27545 -39.73560 -37.94552 -37.11986 -34.59315 -33.50063 -32.82003 -31.85215 -30.83925 -30.78580 -29.45125 -26.47297 -25.08596 -24.76636 -23.78895 -23.54628 -22.00076 -20.91976 -20.53267 -19.65589 -18.43989 -17.75702 -17.05374 -16.52183 -16.32202 -15.91935 -15.16979 -15.09998 -14.98869 -14.47731 -14.39847 -14.30705 -14.00440 -13.69885 -13.55547 -13.38185 -13.12764 -13.00596 -12.52703 -12.37558 -12.00761 -11.97024 -11.88525 -11.62587 -11.44430 -11.22512 -10.80512 -10.70137 -10.62443 -10.45670 -10.42560 -10.29583 -10.04600 -9.82243 -9.56038 -9.32322 -9.08182 -8.93511 -8.51586 -8.39643 -6.81087 -6.13092 -3.44457 -0.09983 0.55191 1.54855 2.43190 3.09512 3.12713 3.36100 3.47193 3.51088 3.91294 3.99713 4.36769 4.43043 4.52654 4.55041 4.64783 4.82331 4.83729 4.89870 5.07092 5.13342 5.23042 5.30556 5.39108 5.50481 5.55911 5.58407 5.69682 5.72880 5.83857 5.93334 5.95588 6.02629 6.10571 6.17460 6.27534 6.28541 6.31683 6.42702 6.47879 6.50300 6.53879 6.61583 6.81786 6.86094 6.96828 7.05477 7.52666 7.63922 7.97109 8.20284 8.36737 8.93210 9.65864 10.12788 11.02017 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022784 B = 0.002687 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.638375 B =10418.857904 C =10918.856112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.163 3.837 3 H 0.029 0.971 4 C 0.130 3.870 5 H 0.093 0.907 6 N -0.709 5.709 7 C 0.559 3.441 8 O -0.534 6.534 9 C -0.106 4.106 10 C -0.077 4.077 11 C -0.110 4.110 12 C -0.070 4.070 13 C 0.118 3.882 14 N -0.481 5.481 15 C 0.132 3.868 16 C -0.181 4.181 17 C -0.058 4.058 18 C -0.068 4.068 19 C -0.118 4.118 20 C -0.134 4.134 21 C 0.141 3.859 22 N -0.589 5.589 23 C -0.278 4.278 24 H 0.078 0.922 25 C 0.052 3.948 26 N -0.877 5.877 27 Si 0.843 3.157 28 H -0.288 1.288 29 H -0.297 1.297 30 H -0.260 1.260 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.396 0.604 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.138 0.862 40 H 0.180 0.820 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 6.341 -22.334 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.056 3.944 3 H 0.047 0.953 4 C 0.025 3.975 5 H 0.111 0.889 6 N -0.358 5.358 7 C 0.346 3.654 8 O -0.414 6.414 9 C -0.110 4.110 10 C -0.096 4.096 11 C -0.130 4.130 12 C -0.089 4.089 13 C -0.003 4.003 14 N -0.189 5.189 15 C -0.040 4.040 16 C -0.201 4.201 17 C -0.083 4.083 18 C -0.070 4.070 19 C -0.157 4.157 20 C -0.174 4.174 21 C 0.015 3.985 22 N -0.313 5.313 23 C -0.406 4.406 24 H 0.095 0.905 25 C -0.151 4.151 26 N -0.516 5.516 27 Si 0.670 3.330 28 H -0.215 1.215 29 H -0.224 1.224 30 H -0.185 1.185 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.231 0.769 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.176 0.824 39 H 0.156 0.844 40 H 0.197 0.803 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.159 6.003 -22.812 23.617 hybrid contribution 0.710 0.873 1.179 1.630 sum 1.870 6.876 -21.632 22.776 Atomic orbital electron populations 1.21790 0.94928 1.02277 1.00234 1.20698 0.93944 0.93268 0.86449 0.95342 1.21816 0.95079 0.97154 0.83443 0.88932 1.46072 1.69253 1.12254 1.08229 1.18057 0.77324 0.87018 0.83007 1.90560 1.51390 1.14671 1.84750 1.19988 1.03624 0.94379 0.93010 1.21476 0.95912 0.92791 0.99452 1.20834 0.99655 1.00671 0.91831 1.20987 0.97176 0.92463 0.98258 1.18858 0.98564 0.94527 0.88371 1.68049 1.14881 1.12002 1.23934 1.23008 0.92351 0.89320 0.99355 1.22072 1.02491 1.01941 0.93628 1.22720 0.91790 0.94097 0.99682 1.18652 1.00459 0.95093 0.92831 1.21768 0.95370 1.00084 0.98438 1.22033 0.99446 1.00002 0.95874 1.21365 0.84560 0.96812 0.95740 1.44273 1.02526 1.65291 1.19252 1.18567 1.02102 1.35674 0.84246 0.90478 1.25552 0.96793 0.96885 0.95866 1.70088 1.46850 1.31070 1.03546 0.87380 0.80776 0.86676 0.78174 1.21532 1.22362 1.18470 0.92256 0.91492 0.94355 0.76861 0.84810 0.84491 0.84392 0.82419 0.84382 0.80320 0.92667 0.92667 0.92642 0.91638 0.95675 0.91268 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.96 37.16 0.30 -2.07 16 2 C 0.16 2.98 3.03 -67.60 -0.21 2.77 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 4 C 0.13 2.13 2.00 -67.81 -0.14 1.99 16 5 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 6 N -0.71 -9.32 4.52 -54.72 -0.25 -9.57 16 7 C 0.56 7.90 7.69 -12.46 -0.10 7.80 16 8 O -0.53 -9.03 13.07 5.28 0.07 -8.97 16 9 C -0.11 -1.28 5.90 -104.66 -0.62 -1.90 16 10 C -0.08 -0.70 9.51 -39.14 -0.37 -1.08 16 11 C -0.11 -0.87 9.92 -40.04 -0.40 -1.27 16 12 C -0.07 -0.66 9.96 -39.38 -0.39 -1.05 16 13 C 0.12 1.42 6.60 -84.87 -0.56 0.86 16 14 N -0.48 -5.68 10.34 -10.99 -0.11 -5.79 16 15 C 0.13 1.28 11.15 -17.47 -0.19 1.08 16 16 C -0.18 -1.80 10.03 -39.74 -0.40 -2.20 16 17 C -0.06 -0.72 9.29 -39.31 -0.37 -1.09 16 18 C -0.07 -0.87 5.76 -106.53 -0.61 -1.48 16 19 C -0.12 -1.88 5.46 -26.69 -0.15 -2.03 16 20 C -0.13 -2.34 6.08 -26.61 -0.16 -2.50 16 21 C 0.14 2.91 4.58 -3.71 -0.02 2.90 16 22 N -0.59 -13.12 2.48 -164.77 -0.41 -13.53 16 23 C -0.28 -7.28 8.45 -15.06 -0.13 -7.41 16 24 H 0.08 2.18 6.79 -52.49 -0.36 1.82 16 25 C 0.05 1.43 4.81 -17.43 -0.08 1.34 16 26 N -0.88 -25.62 13.97 55.49 0.78 -24.84 16 27 Si 0.84 20.58 27.36 -169.99 -4.65 15.93 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 29 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.26 -6.04 5.22 56.52 0.29 -5.74 16 31 H 0.06 1.14 7.38 -51.93 -0.38 0.76 16 32 H 0.07 1.27 7.71 -51.93 -0.40 0.87 16 33 H 0.04 0.54 7.78 -51.93 -0.40 0.13 16 34 H 0.40 4.11 6.67 -40.82 -0.27 3.84 16 35 H 0.13 0.89 6.42 -52.48 -0.34 0.56 16 36 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.18 2.48 4.96 -52.50 -0.26 2.22 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.03 0.52 6.69 -51.93 -0.35 0.17 16 46 H 0.07 1.56 6.98 -51.93 -0.36 1.20 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -31.75 369.61 -10.16 -41.91 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.56 Total: 4.62 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -4.59 Total: -5.33 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.01 Total: -53.73 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.65 Total: 15.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.75 -10.16 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993641985.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.917 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds